G712815


Basic Information

Item Value
gene id G712815
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45459133 ~ 45462621 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU810340
TCCTTTAATACATAACACAGCTAATACAAATGGAAAAAAAAGATACACCGACCAAGACCAGTATTGTATACCGTTGTTATACTTTCACTGTAAGCTTTGAAAATGACTTTGGGAGAAAAATAACATGGTAATCTCATATATTTCTTTGTGGTTCAGTTAGAGAATTTTATAGACGGTTAAAACCAAATCCATTGAAAAAGAACACGTGTACATAATATACAACAAGGCACTGAGGAAGAATCCTGCATATCTTTGGGTGGAGCTACCGCCCGCGGAGTTCCAGTGAAATGCTGTGGGGTGTCGCTTATTTTAAAGCAACCTTGCAGGAACTTTACGAGAACTTTGCTGGTAGAGGGAAATAATGAAGCACCTTCCAAGCTGGAGATCTTTTGAGTATGTACTGCTGTGTTTTTCGTCCAGATGTTTAAAGTAAACGTGATTATTTTGGACCAAGCTGCCCTatctatattataatacactaagCTTTCTAAGCTGAAGGGAGGGTCTACTCCTAGCATTTTTGGCCAATTTTCAGAATCTTTGTCTTGTTTCCAGATTTTTGTGTTTGGAATGGCACTGTTGCTATTGCATCATGTCAGTGCCATTATGAAGTGATTTCACTCCTAAGGCAAAGCCTATAAAAGCATGGGTCCAGCTACTCAGTGGGTATAGCAATAATCATGCCCAGACGCAGACGATCTACTTCTCGCCCAGTCCGCAGGAGGCGTAAAAAAACTCTTGGGTCCCTAGTTAGAAAGTTAGGCCCCTTCCCTTACTAGCCCATCAGGTAAGTGTCCTTTGGGCTGCAAAGCTCACTAGTCCAAAGTCTTCTAAATAAAAACGAGGACTTTAAACTAACTACGACCAATCAGATTAAGTGTTAACCGGCAATGGCAGACATCCACATAGTAGATGTTTTGGCGGTGTTGTAGGTGGAACTGCATTGGAGCCATAAATCGGTAAACAGCTGCTCTTGCgatcattgtcacgaagccacacccGCCCCACTCATGTTAGAAGTTCCGAACgagaaggtgtaggttatatagAAATGATTACCCTCAAATTGAAAAATCATTAAACGAATGAGGATTTCTATCATCCTAtttgaggtgtagattacatctcacattccagtgtttgaACTTGTAAACACAGATGCATATGGGATTTCTGTTCATGCGACTCTGCAGCATATGGCGATGTACACTTTAGGAGTAACGCTGGGATCCAATATTTTTTTTTGGACAGCTCTAATGCGGTGCCACTTCCGACACCGCAAAAACGACACAGCAAAAAGAACCGATGTcggctaaagcggatctgattcAAAGGAGCTCTCAGGCTAGGATTCAATCGGATCAAGTGTGAACAGGCGACAGCTGACGCCTACATAGCTGGTGTTTTGGCGGTGTCTGAGGTGTAACTACATTAAGAGCTGTCAAGCAACAATAAGGATTTGTATCAGCCTAATCGAAGTGTAGAGGCTGCATAGGATTATTACTAATGCGACTCGGTCCATCCAATGGCAATTTCCACAATAGCCTACCGCACAGAGCTTCTTGTGGATTTGATGTGGTTCTAGCCCCGACATAGCCAAAACAACCGATATGCAAATGTcggctaaagcggatctgatAAAATTGGGCCCTTtctatttttaatattttcaatttttggggggtttggatTGGCACCGCTATGGGAGATTATGCTGTCATAAAGCATTTGATGCAAGTTAAGATGTACATTTGTGGGCCATAATTGACTGGACATTCCTAATTACCATGGCAATTAGGTCTCACAATAGTAATATTACATTTGCAACATGCAGTACAGTATAAACTGCACTGCTACGCTTATAGTCTATGGCAGGCAGTGGGTAAAATCTTGGGCAGTATCTCATGACCCGCTGCCCTGATGTCCCCCAACTCTTAAAAGTGAGGTGTATATAATGAGTTAAAAAAGCACGAGTCAAATAAGCACTAGGCCTAAAATCCTTTCAAATAATGCTGTCAAATAAAGCGAGGCATATAATGAGTCAAATAAGCACTAGGCCTGAAACAGTCCTTTGTAGACACACTGGAGAGGTGGAAATTCCACTTCCACACTTTGAAGTGGACGCATCCATGCAAACTACAAATTTTAGCAGGTCACTTCACTCAAAACTTTAGATTTTTGGGGCAGCTAAAACTCTGATTTGGTCCAACAATACAATATTGATTCCTGCATGAAAGTGTTTGCCTTGCCCCGTTTTTCCCTGTGTGCTCCGAGTAGTCTagatggagagaagggaagagaagaatGCAATAATTGTGGAGCATTTAAAAATCCAATGGCAAGAAGAAACCGTAGGCTACTATTGGGGTTTTGGTTTCGAGTTTCCCCTCCCTCAGTGATTAGCCCCAAGTGTGATAGCCTATTTGTACACAAGTACATTTCTCTCTATTAAACAAAATAAATCTGCAATTCTGAAGCCCTATTTTGACAGTAATATTCTAGCAACAATAGCCTAATTGTCAATCCAAAATTCATGCCAATCACTCACTGGTTTAGGTATGCCTATTTCACATCAAAATCGATGTATCATGCATTCCTGCTTGGACCTGTTAAATGACACAACTTGAGTTGAGAAAATTGGTATACCCAGAAAGCtgaacaaatgttttatttgtacGAGGGGGAAATTTTCATTAAATCAAATAATTAATTTCCAATGATTTACCGTCTGTAAGGATGGGGTGCCGCTAAGCAGTCTGCTATTTTAAGGGTTTATTCCAAGCACTTTTAACCCTTTAATCACTGGCAATGTTCCCCTTTCAACAAtcattatatatttaaaaatgccACTTGAAAATAATTTGAGTATTGAGTTGCATATTTCCATTTCTTGATAATAAAAGAGATGGTTCCTTAACAATCGGGAAGGGCCCAAAATTTCCAAAGCTTAGAAGTGGGCGTCCAATTGAGGTTTCATCCATTAGAAGAACCAAACATGGTACTCGTGAGTTGGTAGAAGTTTCTCCTAACCGCTGGTCCAGGGTcagatttattattatttttcaatctggggtttggggttgggtaatctgatcctagatctgtggttagggacGACTTCTACCTCGAACCCTTATAGATTCTGACTGGCCATGCCCCAACTCCGCACACTCATAGGAACCACCCCAGTAACACTAGTCTCACCCTGTAACAAAAGCCCTTGTAATGGTAGCATGTTAGCATAAGAAAGACAAAGCTAGCTGGTTAGCAATAAGAGCCATGAGAAAGTCAGTCTGGCCCAGAGTGTTCAAAATCACATTTCTCCAAAACACTGAGGGAAAGGTGTCCTGACAAGGCTGTCGCAGGACTCAACCTCCCCCAGCCCTCTGCTAAGTGATGAAAGGTGAAAGGTGAAAGGTCTTGGACGACACCTCACCAGGTGCTACACTGGCTACCGTAGCTGCTGATGGATGCAGAGTTGCTGTAGCG
>TU810339
tAAAATTGGGCCCTTtctatttttaatattttcaatttttggggggtttggatTGGCACCGCTATGGGAGATTATGCTGTCATAAAGCATTTGATGCAAGTTAAGATGTACATTTGTGGGCCATAATTGACTGGACATTCCTAATTACCATGGCAATTAGGTCTCACAATAGTAATATTACATTTGCAACATGCAGTACAGTATAAACTGCACTGCTACGCTTATAGTCTATGGCAGGCAGTGGGTAAAATCTTGGGCAGTATCTCATGACCCGCTGCCCTGATGTCCCCCAACTCTTAAAAGTGAGGTGTATATAATGAGTTAAAAAAGCACGAGTCAAATAAGCACTAGGCCTAAAATCCTTTCAAATAATGCTGTCAAATAAAGCGAGGCATATAATGAGTCAAATAAGCACTAGGCCTGAAACAGTCCTTTGTAGACACACTGGAGAGGTGGAAATTCCACTTCCACACTTTGAAGTGGACGCATCCATGCAAACTACAAATTTTAGCAGGTCACTTCACTCAAAACTTTAGATTTTTGGGGCAGCTAAAACTCTGATTTGGTCCAACAATACAATATTGATTCCTGCATGAAAGTGTTTGCCTTGCCCCGTTTTTCCCTGTGTGCTCCGAGTAGTCTagatggagagaagggaagagaagaatGCAATAATTGTGGAGCATTTAAAAATCCAATGGCAAGAAGAAACCGTAGGCTACTATTGGGGTTTTGGTTTCGAGTTTCCCCTCCCTCAGTGATTAGCCCCAAGTGTGATAGCCTATTTGTACACAAGTACATTTCTCTCTATTAAACAAAATAAATCTGCAATTCTGAAGCCCTATTTTGACAGTAATATTCTAGCAACAATAGCCTAATTGTCAATCCAAAATTCATGCCAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU810340 False 3489 lncRNA 0.42 1 45459133 45462621
TU810339 True 904 lncRNA 0.39 1 45460080 45460983

Neighbor

gene id symbol gene type direction distance location
basp1 NA coding downstream 285392 45122083 ~ 45173741 (-)
LOC110529115 NA coding downstream 474865 44980969 ~ 44984268 (-)
efr3a efr3a coding downstream 1022574 44184993 ~ 44436559 (-)
LOC110529930 NA coding downstream 1064494 44390878 ~ 44394639 (-)
LOC118965613 NA coding downstream 1695815 43759329 ~ 43763318 (-)
znf622 znf622 coding upstream 22397 45485018 ~ 45495101 (-)
retreg1 fam134b coding upstream 46460 45509081 ~ 45601564 (-)
nol7 nol7 coding upstream 216238 45678859 ~ 45684992 (-)
amph amph coding upstream 330627 45793248 ~ 45924730 (-)
tmem71 tmem71 coding upstream 543790 46006411 ~ 46033000 (-)
G712812 myo10 non-coding downstream 2606 45455909 ~ 45456527 (-)
G712810 myo10 non-coding downstream 5817 45453032 ~ 45453316 (-)
G712809 NA non-coding downstream 6699 45452208 ~ 45452434 (-)
G712806 NA non-coding downstream 9272 45449595 ~ 45449861 (-)
G712804 NA non-coding downstream 11631 45447269 ~ 45447502 (-)
G712949 NA non-coding upstream 194555 45657176 ~ 45711563 (-)
G712967 NA non-coding upstream 249474 45712095 ~ 45712403 (-)
G712968 NA non-coding upstream 249995 45712616 ~ 45712839 (-)
G712969 NA non-coding upstream 250925 45713546 ~ 45713820 (-)
G712972 NA non-coding upstream 255044 45717665 ~ 45717876 (-)
G712814 NA other downstream 885 45457777 ~ 45458248 (-)
G711133 NA other downstream 919629 44538793 ~ 44539504 (-)
G709454 NA other downstream 2288051 43170760 ~ 43171082 (-)
G709272 NA other downstream 2738434 42719771 ~ 42720699 (-)
slc22a16 LOC106571810 other downstream 5499520 39956961 ~ 40017167 (-)
crfb16 LOC106568648 other upstream 848509 46309732 ~ 46325685 (-)
LOC110529973 LOC106568664 other upstream 1588846 47051073 ~ 47067973 (-)
G714425 LOC106568665 other upstream 1715803 47178424 ~ 47178736 (-)
G715865 NA other upstream 2826321 48288942 ~ 48289581 (-)
dlg1l LOC106568684 other upstream 3079670 48356004 ~ 48616588 (-)

Expression


Co-expression Network