XLOC_026233


Basic Information

Item Value
gene id XLOC_026233
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16064873 ~ 16068537 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052979
GAAGCTCTGTCTCTCTTCTTTCTGATATATGGAGGAGATGAAATGTGAACACACTGGAAGATTCAGGATACAGGATGAGACTTCCTCCTTCCCTCTGTCACACAAACACTGTTCCTGTAGGGTAGTAATCAACCCCAAAAGCTCCGCCTGAATGATGTTTTCCTGCCTTTTTTATTTGTACACTATTGAAGTATATTTTCCTAATGTCTGAAACACTAGCATGTGATCTGCAGCTGTCTGGGTGTTCATTTTCCTGCCTGTTGTTTCTGCATACTACGTTAACAGTGTTTATATCAAATGCATGTATTTTATGCCAGTGGCTCTTCATAAAGCAGctgtttatttagaataaaaagcTTTTGTGAGGATGAAATGGCC
>TCONS_00052980
GTTTTCTATAATAGTGAAAACATATGTATTATAATAAAGCAAGCGCACTCTTCACccattaaagaaacaacaacacaaaaagatGCTCCCTTTACTGATCAGCTGGCCGCGGCTATTATTATCGCCCGCTGCATCTGTTTCTCGCAGGGCGGCCAGCAGTGTTGAGCAGCCGGGAAGGGTTTGCAGTCCGCCGGACACACAGCCCAACATTTCTCCTCTCTGGTGACCGAACGTCTTCCGCATCTCCCTCATCATGCTGGACGTCCTGATATTGATGTTTTTCGCCATCATCGGCCTCATGTTCCTGTCCTACATCATCTACATGCTGTGATTGTGTCGACATGGACGCGCCTCGGGACGGATCGCGAAACACAAAGGTTGGTGATGAAATGCAGCAAATAATGGAGGAAGAGCAGCGTTGTGTTGTTTTTAAGAGGGGGTTTTGATTGATGGTGTTTGTGGGTGGGCGCTTACCTAAATGTACTTATCATTAGGCTATGGTTAGAGCAAATGGTAATATTGGAATAGTTAGGTCTGTCATGTtatataatattaacatttattaatgcgtAATACGAGGAATCACACAACATGACGCGGGTTTACATTAGCTATAATAATGCTGTAGGCCTCGTGCAGATATGGAGAACCAAACCTGCTAAAAGAAGATGTGTATATATGGTGTAGGCTATAAATAAAGTTGAagtcgaattattagcccccttgtttatttttttaccccaatttctgtttaacggacagacgatttttttcaccacatttctaaacataatagctttaactcatttctaataactgatttattttatctttgtcatgatgacagtaaataatatttgactagatattttttaagacacttctatacagcttaaagtgacatttaaaggcttaattaggttaactaggcaagttattttgtaatgtttgttctgtagactatcaaaaaacaatatagcttaaaggggctaataattatgtctttaaaatggtgtttaaaaaataaaaaaatctgcttttattctagccaaaataaaacaaatatgactttctccacaagaaaaaaatatcagacatactgtggaaaccCTTAAATGCCTCAGGCAAATCTGTGAAAAACTTGTCTTCAAGGAGGTCAATTGAAGTAAATACAAAAATCAGTATGTGCAGTAAAGTATGATGAATATGTTAGTAATCTATCAAATTAAATTTAgggtaaaattaagtttttattcacctaaacccaactgtccaCCTATGTGGACGCCAGAGGAGTCAGATTGCATAAAAGtcctttttttctgtaacctgctAATATATCTATTCTATTTTTCAAAGATGTTATCAATTGTCGTATATTGTTATAAAACAGACAATtaacaaatacatcaacataAATAGTCGTTTAAAATGACATATTACATATGCCCTGTGTCCTGACTGTTTTAAGGGCTTTTACacgaaaaataataatttcctgcGTGCTGTAAAGAACCCAGTTTCAACTAAAAATACTGTAACTGAGATGATTTAAAAAGAAGTAAGATAAGGATGAAATAATAAGTTGTTACAATCAGcattacagttgaagtcgaattattagccccctgtttattttttcccaatttctgtttaacggagagctgatttgttcaacacatttctaaacattatagttttaataactcatttcttataacagatttattttatctttgtcatgatgacagtaaataatagtttactagatattttcaagacacttctatacaacttaaagtgacatttaaaggcttaactaggttaattaactaggcaagttattgtataacgatggtttgttctgtagactatcctgaaaaagatatagcttaaaggggctaataattttgaccttaaaatggttttcaaaaaaataatactGACTTTTATTCTATCGGAAATTAAAGCAAATAAGCTTTTCTCTtgtagaaaaaaacattatcagacatactgtgaaaatttcctttctctgttaaacatcatttaagaaatatttaaaaatgaaaaaaaataataataataaattcaaaagggggctaataattctgacttcaactgtatataactgctgttattattgttcctacaatatgcattttattgttattatattgtaCCATTAttgtttttcaagagttcacacttagatactgtttgacaacttgttagcaagttagcaggtttggcatgctgtcccgggagagaaccctgagttcggagatagttgagcccagggctcctgccaggtccataaagcatgtgaggggagtacgaggtcaggtgttctcgagagctcccctcggcaaaagaggaaaggaggagaaggggtggatggggggtttcttcggaaaacgaagataagggagtagatcttagctaggttacttatagtgagtttggatcaatccgattggctatagccaatgagtgtagatgagtggccagctgcagtcaatcaaatcacgtgctcctctcgaaattagtttgtgaaacttcatttaataaatgagctGATATGAATAGAATAACAGGCCATTAAAGAAACTATATTCCATATTGTCAGCTGACTTTGTCACATTGTTGCATGGTGTCTACGTATGTGGACAgttaaataattgttaaataaaactaaattttgtaaaaatgaaaatggattttattttagtgtcatattaaatttatttaaaaaataataaaacaatgtttttcatGATTTATGCATGAAAgggttaaaattgtgtttaaaaaaatataaaactgcttctattctagccaaattaaaacaaataagattttctccaaaagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaaacattatttgtgaaatatttaaaaaagaacataaaatattattgttttatttatttttaggtatttatttattagtttgttgcAGGTTTGTTTCTCCATATTGTATAATATCTGtttgtgtttataataataatatcattcatATGTGTTATGTTGCATCTTTCAGGAAGAAGCTCTGTCTCTCTTCTTTCTGATATATGGAGGAGATGAAATGTGAACACACTGGAAGATTCAGGATACAGGATGAGACTTCCTCCTTCCCTCTGTCACACAAACACTGTTCCTGTAGGGTAGTAATCAACCCCAAAAGCTCCGCCTGAATGATGTTTTCCTGCCTTTTTTATTTGTACACTATTGAAGTATATTTTCCTAATGTCTGAAACACTAGCATGTGATCTGCAGCTGTCTGGGTGTTCATTTTCCTGCCTGTTGTTTCTGCATACTACGTTAACAGTGTTTATATCAAATGCATGTATTTTATGCCAGTGGCTCTTCATAAAGCAGctgtttatttagaataaaaagcTTTTGTGAGGATGAAATGGCC
>TCONS_00052981
GATCAAccaatactattgaagtcaatggctacaaaTCTTTCATAACATCAtcctttatgttcaacagaagaagctcGAAACGCTTTGGAGCCAGGGCGGCCAGCAGTGTTGAGCAGCCGGGAAGGGTTTGCAGTCCGCCGGACACACAGCCCAACATTTCTCCTCTCTGGTGACCGAACGTCTTCCGCATCTCCCTCATCATGCTGGACGTCCTGATATTGATGTTTTTCGCCATCATCGGCCTCATGTTCCTGTCCTACATCATCTACATGCTGTGATTGTGTCGACATGGACGCGCCTCGGGACGGATCGCGAAACACAAAGGAAGAAGCTCTGTCTCTCTTCTTTCTGATATATGGAGGAGATGAAATGTGAACACACTGGAAGATTCAGGATACAGGATGAGACTTCCTCCTTCCCTCTGTCACACAAACACTGTTCCTGTAGGGTAGTAATCAACCCCAAAAGCTCCGCCTGAATGATGTTTTCCTGCCTTTTTTATTTGTACACTATTGAAGTATATTTTCCTAATGTCTGAAACACTAGCATGTGATCTGCAGCTGTCTGGGTGTTCATTTTCCTGCCTGTTGTTTCTGCATACTACGTTAACAGTGTTTATATCAAATGCATGTATTTTATGCCAGTGGCTCTTCATAAAGCAGctgtttatttagaataaaaagcTTTTGTGAGGATGAAATGGCC
>TCONS_00051164
ATCAGCTGGCCGCGGCTATTATTATCGCCCGCTGCATCTGTTTCTCGCAGGGCGGCCAGCAGTGTTGAGCAGCCGGGAAGGGTTTGCAGTCCGCCGGACACACAGCCCAACATTTCTCCTCTCTGGTGACCGAACGTCTTCCGCATCTCCCTCATCATGCTGGACGTCCTGATATTGATGTTTTTCGCCATCATCGGCCTCATGTTCCTGTCCTACATCATCTACATGCTGTGATTGTGTCGACATGGACGCGCCTCGGGACGGATCGCGAAACACAAAGGAAGAAGCTCTGTCTCTCTTCTTTCTGATATATGGAGGAGATGAAATGTGAACACACTGGAAGATTCAGGATACAGGATGAGACTTCCTCCTTCCCTCTGTCACACAAACACTGTTCCTGTAGGGTAGTAATCAACCCCAAAAGCTCCGCCTGAATGATGTTTTCCTGCCTTTTTTATTTGTACACTATTGAAGTATATTTTCCTAATGTCTGAAACACTAGCATGTGATCTGCAGCTGTCTGGGTGTTCATTTTCCTGCCTGTTGTTTCTGCATACTACGTTAACAGTGTTTATATCAAATGCATGTATTTTATGCCAGTGGCTCTTCATAAAGCAGctgtttatttagaataaaaagcTTTTGTGAGGATGAAA

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0045296 cadherin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-131127-284 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097322

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052979 False 378 lncRNA 0.40 2 16064873 16067953
TCONS_00052980 False 3461 lncRNA 0.34 1 16064873 16068333
TCONS_00052981 False 705 lncRNA 0.45 3 16064873 16068537
TCONS_00051164 True 656 mRNA 0.46 2 16064878 16068236

Neighbor

gene id symbol gene type direction distance location
XLOC_026232 atp6v0ca coding downstream 9410 16044680 ~ 16055463 (-)
XLOC_026231 spsb3a coding downstream 25254 16018202 ~ 16039619 (-)
XLOC_026230 mrps34 coding downstream 53905 16003122 ~ 16010968 (-)
XLOC_026229 nme3 coding downstream 64705 15990547 ~ 16000168 (-)
XLOC_026228 cramp1 coding downstream 175365 15859612 ~ 15889508 (-)
XLOC_026234 lasp1 coding upstream 4429 16072966 ~ 16110351 (-)
XLOC_026235 arl5c coding upstream 65839 16134376 ~ 16142057 (-)
XLOC_026236 cacnb1 coding upstream 88583 16157120 ~ 16227683 (-)
XLOC_026237 NA coding upstream 163972 16232509 ~ 16289826 (-)
XLOC_026238 eftud2 coding upstream 320483 16389020 ~ 16413635 (-)
XLOC_026225 NA non-coding downstream 358106 15685784 ~ 15706767 (-)
XLOC_026221 NA non-coding downstream 429365 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 439353 15618257 ~ 15625520 (-)
XLOC_026205 CR788308.1 non-coding downstream 1176705 14888052 ~ 14888168 (-)
XLOC_026204 NA non-coding downstream 1189603 14873503 ~ 14875270 (-)
XLOC_026241 NA non-coding upstream 563573 16632110 ~ 16664028 (-)
XLOC_026245 BX470185.2 non-coding upstream 831706 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1533949 17602486 ~ 17604149 (-)
XLOC_026249 NA non-coding upstream 1874752 17943289 ~ 17944235 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G21655 NA non-coding NC_056701.1 CM032070.1 20230015 ~ 20314144 (+)