G711865


Basic Information

Item Value
gene id G711865
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 45763662 ~ 45767095 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU809334
tcgcaaagttcaagggggccgaatactttcgcaaggcactgtattacacTAGACAACTAGTTCttatagtctttagccgtacccttatcctactcctcctcttcctctggtgatgtagaggttaacccaggccctgcagcccctaGCTCCACTCCAGGcgccctcatttgttgacttctgtaactgtaaaagccttggtttcatgcatgttaacattacaAGCCTCCCGAAGTttattttattcactgctttagcacactcagccaacccggatgtcctagccgtgtctgaatcctggcttagaaagaccaccaaaaaccctgaaatttccatccctatctattacattttccgacaagattgaactgctaaagggggtggtgctgcaatctactgcagagatcaGTAGATTGCAAATCTACCTTTcaagaaacaagtctctcaccattgccacttgttatagacccccttcagcccccagctgtgccctggataccatatgtgaattgattgccccccatctatcttcagagttcgcaCTGTTAGgttacctaaactgggacatgcttaacaccccggccttcctacaatctaagatagattATCATGAAACCTAcctacaaccctaaatccgtagccatgggcaccctcttagatatccaccaacttgccctctaaactTGCCCTCCAACTTGCCCTCTTAACTTGCTCTCTAAATACACATCTGCTGTCTtaaaccaggatctcagcgatcattgcctcattgcctgcgcaatgggtccgcggtcaaatgaccatccctcatcactgtcaaacgctccctaaaacacttcagcgagcaggcctttctaatcaacctggcttgggtatcctggaaggatattgacctcatcccttaagtagatgatgcctggttgctctttaaaagtgctttcctcaccatcgtaaataagcatgccccattcaaaaaatgtagaactaagaacaggtggttcaccccagacttgactgcccttgaccaacacaaaaacatcctgtggcgttctgcactagcgtcgaatagtccccgcgatatgcaacttttcagggaagtcaggaaccaatatactcagtcagttaggaaagctaagactagctttttcaaacagacatttgtatcctgtagcactaattccaaaacgttttgggatactgtaaagtccatggagaataggagcgcctcctcctcctcatttcaATTAGcgtttttctacggctggccatgctttccacctggctacccctaccccggccaacatctcagcaccccatgcagcaacttgcccaagccccccccccccccccccccccacttccccttcacccaaatccagccagctgatgttctgaaagagctgtaaaATCTGGATCCCAACAAATCTGCTGGGCTAGACAActtggaccctctctttctaaaattatccgccaaaaattgttgcaacccctattactagcctattcaacctctctttcgtatcgtctgagatccccaaagattggaaagctgccgcagtcatccccctcttcaaagggggagacactctagacccaaactgatatagacctatatccatcctgccctgcctttgtaaaatcttcgaaagccaagttaacaaacagatcaccggcCATTTCAAATCCtactgtaccttctccactatgcaatctggtttcccagctggtcatgggtgcacctcagccacgctcaagatcctaaatgatatcataaccgccattgataatagacagtactgtgcagccgtcttcatcgaagacacacgttccagcaggtatatctcactgatcatccccaaagccaacacctcatttggccgcctttccttccagttctctgctgccagtgactggaactaattgcaaaaatctctgaagttggagacttttatttccctcaccaacatcaactatataaacatcaactatctgagcagctaacctaTCGCTGCAGCTGTTCATAGTCCATATGTAAATAGCCCGcccaatctatctacctcatccccatactgtttttatttaatttacttttctgctcttttgcacatcagtatctctacttgcacatcatcatctgctcatttatcactccagtgttaatctgctaaattgtaactattcactcctatggcttattattgcctacctcctcatgccttttgctcacactgtatatagactttattttttctactgtgtcattgatttgtttattgtgttattggcttgtttattgtttactccatgtgtaactctgtgtttgtctgtgtcacactgctttgctttatcttggccaggtcacatttgtaaatgagaaattgttctcaactagcctacctggttaaataaaggtgaaataaaaataaaatattatatgACCCTGATGGTCATCTGCTAACTTTGGAACATCTTGAATAACGATAAGGGCCACATGTACAGTACTCTTAAACGTCCACTCAGCACAGCCCTTGGATCATGGTTCCTCTCTAATTTTAATTCTAGGTTTATGACGTTTAGGGAGTGCTTCCTAGATGCTGTGCTTCGGCATATGCATTGATGGGTCTTGGATTTTTAAACTGAGTAAAACACTGCTGATGCAAAAAGGGGTTTTAAGAAAAACATTTGGTTGGTTGACAGATTTGTATTATTAGaaaaataatataacaatattattattattattatcataatcattattattattatattacaggTGAGACATACCCAGCAATGTCAACGTCTTGTCAAGTACTCAAACCTGTACAGCAGCCCCATATAATCACGTACAGTAGCACCAATTTACAAGAATGTGTTTACAAGGCAGTGATGAAAACAGTTTATATGAGCGCTAAATCAAACAtacaatgatatatatatttgatACAGTTACCCATTCAAAACTGTTGTTACAAAATCACTTCTCAATGTGTACATTTCATGGTTTCACAAACATAAAACAACTATCTAGTTAATGTTTCTCGGACTAACACATTGTTGAGTTTCCTATTTACTAAAGAACAATCATTAAGACAAAACACAAAGAGTTGTAATATAATCTGTATACAAGTCATTCTATACTGAAAACAGGTACATTCTGaaagattttgttgttgttgatgtgataACACATGTTTAATTCATGTCTCATTTCAGGATaatactgttaatttgtattttaCTTAAATTGTATAATTTATGTTGTCTCATACCATGCTAATACACTACCAAGCAATGCAAGCAGATGTGGAATTAACCCCAAAACAGTTGTGTGTCTTTTTGGATCAAGGAAACCAATAGACATGATCAGATCCTCTTTCCTATTCAGGCATCATATAATATACAGCAAATCCATAAACTCCACCAATAAAACATTGAAAACC
>TU809335
cggcCATTTCAAATCCtactgtaccttctccactatgcaatctggtttcccagctggtcatgggtgcacctcagccacgctcaagatcctaaatgatatcataaccgccattgataatagacagtactgtgcagccgtcttcatcgaagacacacgttccagcaggtatatctcactgatcatccccaaagccaacacctcatttggccgcctttccttccagttctctgctgccagtgactggaactaattgcaaaaatctctgaagttggagacttttatttccctcaccaacatcaactatataaacatcaactatctgagcagctaacctaTCGCTGCAGCTGTTCATAGTCCATATGTAAATAGCCCGcccaatctatctacctcatccccatactgtttttatttaatttacttttctgctcttttgcacatcagtatctctacttgcacatcatcatctgctcatttatcactccagtgttaatctgctaaattgtaactattcactcctatggcttattattgcctacctcctcatgccttttgctcacactgtatatagactttattttttctactgtgtcattgatttgtttattgtgttattggcttgtttattgtttactccatgtgtaactctgtgtttgtctgtgtcacactgctttgctttatcttggccaggtcacatttgtaaatgagaaattgttctcaactagcctacctggttaaataaaggtgaaataaaaataaaatattatatgACCCTGATGGTCATCTGCTAACTTTGGAACATCTTGAATAACGATAAGGGCCACATGTACAGTACTCTTAAACGTCCACTCAGCACAGCCCTTGGATCATGGTTCCTCTCTAATTTTAATTCTAGGTTTATGACGTTTAGGGAGTGCTTCCTAGATGCTGTGCTTCGGCATATGCATTGATGGGTCTTGGATTTTTAAACTGAGTAAAACACTGCTGATGCAAAAAGGGGTTTTAAGAAAAACATTTGGTTGGTTGACAGATTTGTATTATTAGaaaaataatataacaatattattattattattatcataatcattattattattatattacaggTGAGACATACCCAGCAATGTCAACGTCTTGTCAAGTACTCAAACCTGTACAGCAGCCCCATATAATCACGTACAGTAGCACCAATTTACAAGAATGTGTTTACAAGGCAGTGATGAAAACAGTTTATATGAGCGCTAAATCAAACAtacaatgatatatatatttgatACAGTTACCCATTCAAAACTGTTGTTACAAAATCACTTCTCAATGTGTACATTTCATGGTTTCACAAACATAAAACAACTATCTAGTTAATGTTTCTCGGACTAACACATTGTTGAGTTTCCTATTTACTAAAGAACAATCATTAAGACAAAACACAAAGAGTTGTAATATAATCTGTATACAAGTCATTCTATACTGAAAACAGGTACATTCTGaaagattttgttgttgttgatgtgataACACATGTTTAATTCATGTCTCATTTCAGGATaatactgttaatttgtattttaCTTAAATTGTATAATTTATGTTGTCTCATACCATGCTAATACACTACCAAGCAATGCAAGCAGATGTGGAATTAACCCCAAAACAGTTGTGTGTCTTTTTGGATCAAGGAAACCAATAGACATGATCAGATCCTCTTTCCTATTCAGGCATCATATAATATACAGCAAATCCATAAACTCCACCAATAAAACATTGAAAACC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU809334 False 3434 lncRNA 0.41 1 45763662 45767095
TU809335 True 1770 lncRNA 0.36 1 45765326 45767095

Neighbor

gene id symbol gene type direction distance location
stard3nl stard3nl coding upstream 3423 45725701 ~ 45760239 (+)
epdr1 LOC106568636 coding upstream 55150 45692358 ~ 45708512 (+)
ranbp9 ranbp9 coding upstream 87277 45651211 ~ 45676385 (+)
rnf182 rnf182 coding upstream 149369 45611353 ~ 45614293 (+)
myo10 myo10 coding upstream 301011 45203948 ~ 45462651 (+)
LOC110529945 LOC106568641 coding downstream 197569 45964664 ~ 45975008 (+)
LOC110529944 LOC106568640 coding downstream 235986 46003081 ~ 46008988 (+)
slc39a6 slc39a6 coding downstream 497545 46264640 ~ 46293864 (+)
cldn15la LOC106568649 coding downstream 585691 46352786 ~ 46356523 (+)
saga LOC106568650 coding downstream 595550 46362645 ~ 46376820 (+)
G711880 NA non-coding upstream 41356 45721801 ~ 45722306 (+)
G711756 NA non-coding upstream 235117 45527673 ~ 45528545 (+)
G711734 znf622 non-coding upstream 270335 45485441 ~ 45493327 (+)
G711708 NA non-coding upstream 317255 45446112 ~ 45446407 (+)
G711901 NA non-coding downstream 8975 45776070 ~ 45776367 (+)
G711906 NA non-coding downstream 16651 45783746 ~ 45784333 (+)
G711907 NA non-coding downstream 17767 45784862 ~ 45785204 (+)
G711908 NA non-coding downstream 19815 45786910 ~ 45787121 (+)
G712010 NA non-coding downstream 187952 45955047 ~ 45955419 (+)
G711845 NA other upstream 116285 45646857 ~ 45647377 (+)
G711021 NA other upstream 1314689 44448584 ~ 44448973 (+)
G709490 NA other upstream 2566020 43196560 ~ 43197642 (+)
G708448 NA other upstream 4379479 41380025 ~ 41384183 (+)
LOC110529918 LOC106571794 other upstream 4482181 41160943 ~ 41283719 (+)
G711912 NA other downstream 26174 45793269 ~ 45794549 (+)
G713405 NA other downstream 698303 46465398 ~ 46466227 (+)
G713574 NA other downstream 948820 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 2770648 48537743 ~ 48544164 (+)
G716133 NA other downstream 2993248 48760343 ~ 48760740 (+)

Expression


Co-expression Network