XLOC_026234 (lasp1)


Basic Information

Item Value
gene id XLOC_026234
gene name lasp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16072966 ~ 16110351 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051165
ACTCCCAATATGAGTATCACAGTATCCGCTTGACGGTGTGATTTTTAAAACAAGTCAGCATTAAGTTTAACGCTTCCTAATACAAACTTTAACTAATTGAACTCAAAATCAGGACTTTTATCGATTTTAGATTGATATTAGATAGTGAAAGTCTTCCGCGGAATGCCCTTGCTTATCTGTGCACGTGAGCGCGCAGCAGGACACAGCGGCAGAGCCGTGAGCGCGCCTTCCGCGTCTGCTTCGTTTCGCTGACAGCCAGCGGTGCGAACTGGACTCATCAACGGCTACAGATCCACACCTCAACAACACAACACTGCTTCTGCCGACCGAGTCCTCGTTTCATCCCTTCGGCCTGCTGTTATTATTCCTCCAAAATGAACCCGCTGTGTAGCAGATGTAACCGAGTGGTGTATCCCACGGAAAAAGTGAATTGTCTTGACAAGTACTGGCATAAAGGATGCTTTAGCTGTGAAGTCTGTAAGATGACTCTAAACATGAAGAACTACAAAGGCTTTGAGAAGAGACCATACTGTAATGCACACTATCCGAAGACATCTTTCACCAGTGTTGCGGACACTCCGGAGAACCTGCGTCTGAAACAACAAAGCAAGATGCAGAGCCAGgtgcTCTACAAGGAGGAGTTTGAGAAGAACAAGGGAAAGGGCTTCAGTGTTGTGGCCGACACACCAGAGTTGCAGAGAATCAAGAAAACACAAGACCAAATCAGCAACATTAAATACCATGAGGACTTTGAGAAGAGCCGAAGTGGAGGGGACACCCCGCTCCCACTGACACCTCAACTAAACACACCTCCAGCATATCCATCCTCGGCTGCATCCCAGAACTATCACTATGAGCCTGAGCCGGTGCGTCCAGCGGCTGCAGCTCCTCCTCCCAGCTCTGGGAAGCGCTACCGAGCGGTGTATGACTACACCGCTGCCGATGAGGACGAGGTGTCGTTCATGGATGGAGACATGATCGTGGACGTGCAGCAGATCGACGAGGGCTGGATGTACGGGCGAGTGGAGCGCACCGGCCAGCAGGGCATGCTCCCAGCAAACTACGTGGAGgccatgtaaaaaaaacaaaaaaaaaaacagcagaccGAGAGAAAGTAGGGCGGAAAAAAAGGCGGAGAGACGCAGATGATTAGCCGAGTGCCATCTCACCTTTCAAGAGCTCATCTTTTTCCTCTTCTATTCCTGCACTAACTCTCCTTTCAGGGGTCTACATCTACCGACCCGGTTACGATCCAAAACAAACACAGTTCAGTatgtaaacatacacacacataccaaCAACAGCGCGCATACACGCAATCGCATAGATAGTGAACGATTTCTCGCCCATATCTTTCGCTTTACACGCACCTCCCTTTCTATTGCTTTTGCTGTCTGTCCGAGCGTTTGTCTTTTTATTAAGTGTTCCCTCTTGTCCAGGAAAGGTGCTGTCACGAGTGGCACTTAAGTCTTAATaagactcacaaacacacaccaccACACGGGTCTCTGAAAGTCTTCAGGGCCTGCTATATAGCACTTCACAGTTCATCTCAACACACCTATCAGTTGCTCTGacaattcttttatattttaatgatcttCTTTTGCAGCCTGTAATTGTAATGTATATCAGTACAGTTTCACACATCATTGGTCTGTGGGTCTGTAACAATGCTTGAACATGACTTGTGGTCATTCCGGTCTTCGTTCCATCACGCTTGATCATTTAAATCAATGTGTTGGGATGGGAATCTCAAAACAGGCTTCTTGTTTTCAACTGGACTTTCTTAAAACTGTATGAAAGGGGCTGGAGACTTTTGCATATTCACTTCAGCTCCTTCACATTCCTCTCTAGCCCCTTAACCGTATcaattagaaaatatatatatatatattaagcatAACTTTGTTCTGCTGCTCCTGCTTTTCGCAGATGACAAGAAAATAGTAATGTACATTGTTCTTCATAAAGGGAAAACTAAAAGAAGCATATCTAGTCGGTTAGCGAGCGAGGAGCAGTTGTAGGATAGTGAGAGGAGCCCAAGCACAATTCTATGGACCATTTTTAGCTTTGgattctttttaaaacaaaacattccaTTTGGTTTGCATTCTATTTCAGTTCTGGAACGTTCCACGTGCATAGTATGAAACTGTATCTCAGAGCTGTTCTGTAAGACGTTGTTATTGatgtttttgttagtttgtttgtttttttttcctcatatcATTGCTTATTCTCATTGCCTTGCTGGTATTGTACGAGACGGAATTTTAATGTCAGTTTATCAATATCAGTGgaataaaacaaatctatttgTATACCAA
>TCONS_00051166
aaaccaaaccaaagctCACGTTGAAGTATTTTTGGCGCATCCGATTCGAAACTGACAATACTTTCATTTCATGCAGGAATGTGAATATGTACTGGCATAAAGGATGCTTTAGCTGTGAAGTCTGTAAGATGACTCTAAACATGAAGAACTACAAAGGCTTTGAGAAGAGACCATACTGTAATGCACACTATCCGAAGACATCTTTCACCAGTGTTGCGGACACTCCGGAGAACCTGCGTCTGAAACAACAAAGCAAGATGCAGAGCCAGgtgcTCTACAAGGAGGAGTTTGAGAAGAACAAGGGAAAGGGCTTCAGTGTTGTGGCCGACACACCAGAGTTGCAGAGAATCAAGAAAACACAAGACCAAATCAGCAACATTAAATACCATGAGGACTTTGAGAAGAGCCGAAGTGGAGGGGACACCCCGCTCCCACTGACACCTCAACTAAACACACCTCCAGCATATCCATCCTCGGCTGCATCCCAGAACTATCACTATGAGCCTGAGCCGGTGCGTCCAGCGGCTGCAGCTCCTCCTCCCAGCTCTGGGAAGCGCTACCGAGCGGTGTATGACTACACCGCTGCCGATGAGGACGAGGTGTCGTTCATGGATGGAGACATGATCGTGGACGTGCAGCAGATCGACGAGGGCTGGATGTACGGGCGAGTGGAGCGCACCGGCCAGCAGGGCATGCTCCCAGCAAACTACGTGGAGgccatgtaaaaaaaacaaaaaaaaaaacagcagaccGAGAGAAAGTAGGGCGGAAAAAAAGGCGGAGAGACGCAGATGATTAGCCGAGTGCCATCTCACCTTTCAAGAGCTCATCTTTTTCCTCTTCTATTCCTGCACTAACTCTCCTTTCAGGGGTCTACATCTACCGACCCGGTTACGATCCAAAACAAACACAGTTCAGTatgtaaacatacacacacataccaaCAACAGCGCGCATACACGCAATCGCATAGATAGTGAACGATTTCTCGCCCATATCTTTCGCTTTACACGCACCTCCCTTTCTATTGCTTTTGCTGTCTGTCCGAGCGTTTGTCTTTTTATTAAGTGTTCCCTCTTGTCCAGGAAAGGTGCTGTCACGAGTGGCACTTAAGTCTTAATaagactcacaaacacacaccaccACACGGGTCTCTGAAAGTCTTCAGGGCCTGCTATATAGCACTTCACAGTTCATCTCAACACACCTATCAGTTGCTCTGacaattcttttatattttaatgatcttCTTTTGCAGCCTGTAATTGTAATGTATATCAGTACAGTTTCACACATCATTGGTCTGTGGGTCTGTAACAATGCTTGAACATGACTTGTGGTCATTCCGGTCTTCGTTCCATCACGCTTGATCATTTAAATCAATGTGTTGGGATGGGAATCTCAAAACAGGCTTCTTGTTTTCAACTGGACTTTCTTAAAACTGTATGAAAGGGGCTGGAGACTTTTGCATATTCACTTCAGCTCCTTCACATTCCTCTCTAGCCCCTTAACCGTATcaattagaaaatatatatatatatattaagcatAACTTTGTTCTGCTGCTCCTGCTTTTCGCAGATGACAAGAAAATAGTAATGTACATTGTTCTTCATAAAGGGAAAACTAAAAGAAGCATATCTAGTCGGTTAGCGAGCGAGGAGCAGTTGTAGGATAGTGAGAGGAGCCCAAGCACAATTCTATGGACCATTTTTAGCTTTGgattctttttaaaacaaaacattccaTTTGGTTTGCATTCTATTTCAGTTCTGGAACGTTCCACGTGCATAGTATGAAACTGTATCTCAGAGCTGTTCTGTAAGACGTTGTTATTGatgtttttgttagtttgtttgtttttttttcctcatatcATTGCTTATTCTCATTGCCTTGCTGGTATTGTACGAGACGGAATTTTAATGTCAGTTTATCAATATCAGTGgaataaaacaaatctatttgTA
>TCONS_00051167
GTTTCGCTGACAGCCAGCGGTGCGAACTGGACTCATCAACGGCTACAGATCCACACCTCAACAACACAACACTGCTTCTGCCGACCGAGTCCTCGTTTCATCCCTTCGGCCTGCTGTTATTATTCCTCCAAAATGAACCCGCTGTGTAGCAGATGTAACCGAGTGGTGTATCCCACGGAAAAAGTGAATTGTCTTGACAAGTACTGGCATAAAGGATGCTTTAGCTGTGAAGTCTGTAAGATGACTCTAAACATGAAGAACTACAAAGGCTTTGAGAAGAGACCATACTGTAATGCATCTGCTTCCTCCACTGTTTACTCAGTCCTTATTACCAGGATGATGCGAACACTATCCGAAGACATCTTTCACCAGTGTTGCGGACACTCCGGAGAACCTGCGTCTGAAACAACAAAGCAAGATGCAGAGCCAGgtgcTCTACAAGGAGGAGTTTGAGAAGAACAAGGGAAAGGGCTTCAGTGTTGTGGCCGACACACCAGAGTTGCAGAGAATCAAGAAAACACAAGACCAAATCAGCAACATTAAATACCATGAGGACTTTGAGAAGAGCCGAAGTGGAGGGGACACCCCGCTCCCACTGACACCTCAACTAAACACACCTCCAG

Function

symbol description
lasp1 Predicted to enable actin filament binding activity. Predicted to act upstream of or within ion transport. Predicted to be located in cell cortex and cytoskeleton. Predicted to be active in focal adhesion. Orthologous to human LASP1 (LIM and SH3 protein 1).

GO:

id name namespace
GO:0005925 focal adhesion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-1936 Predicted to enable actin filament binding activity. Predicted to act upstream of or within ion transport. Predicted to be located in cell cortex and cytoskeleton. Predicted to be active in focal adhesion. Orthologous to human LASP1 (LIM and SH3 protein 1).

Ensembl:

ensembl_id ENSDARG00000057867

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051165 False 2330 mRNA 0.44 7 16072966 16110100
TCONS_00051166 False 1970 mRNA 0.44 7 16072972 16110351
TCONS_00051167 True 623 processed_transcript 0.48 6 16080660 16109858

Neighbor

gene id symbol gene type direction distance location
XLOC_026233 NA coding downstream 4429 16064873 ~ 16068537 (-)
XLOC_026232 atp6v0ca coding downstream 17503 16044680 ~ 16055463 (-)
XLOC_026231 spsb3a coding downstream 33347 16018202 ~ 16039619 (-)
XLOC_026230 mrps34 coding downstream 61998 16003122 ~ 16010968 (-)
XLOC_026229 nme3 coding downstream 72798 15990547 ~ 16000168 (-)
XLOC_026235 arl5c coding upstream 24025 16134376 ~ 16142057 (-)
XLOC_026236 cacnb1 coding upstream 46769 16157120 ~ 16227683 (-)
XLOC_026237 NA coding upstream 122158 16232509 ~ 16289826 (-)
XLOC_026238 eftud2 coding upstream 278669 16389020 ~ 16413635 (-)
XLOC_026239 si:ch211-23l10.3 coding upstream 362655 16473006 ~ 16493528 (-)
XLOC_026225 NA non-coding downstream 366199 15685784 ~ 15706767 (-)
XLOC_026221 NA non-coding downstream 437458 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 447446 15618257 ~ 15625520 (-)
XLOC_026205 CR788308.1 non-coding downstream 1184798 14888052 ~ 14888168 (-)
XLOC_026241 NA non-coding upstream 521759 16632110 ~ 16664028 (-)
XLOC_026245 BX470185.2 non-coding upstream 789892 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1492135 17602486 ~ 17604149 (-)
XLOC_026249 NA non-coding upstream 1832938 17943289 ~ 17944235 (-)

Expression


Co-expression Network