XLOC_026235 (arl5c)


Basic Information

Item Value
gene id XLOC_026235
gene name arl5c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16134376 ~ 16142057 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051168
AGGAATTGTTCGAAATCTCGCGTCATCGTCGTGGGTGGCCAATGAGGGATGCCGTTTTGTGAAGCGACCCCTGCGTCACTACTCATCGTTTAAACATACAAACGCCCACGGAAAACACGACGACATTTCGTATTCCGACGCGATATTTTATGTATCAGACACCGATTTAACAGCAGACAGACACTCAGGGAACGAGTGCAGTGAAGAGGACTTGACACACCAGAACAGCGGAGTACTGTCGCTCGTGGATCATTGTTTTTAACCGGACTGTGAAAGTGTCTACAGCTCACTGTAATTAAAGAATCAACGGATCCAGGAGACTATTAAAAGCTGCTGTGGTCGATTGACTATATTTTAAATTCACAGCGTTCAGAAATGGGACTCCTGTTCGCCAAACTGATGACTCTGTTCGGAGACAGAGAACACAAAGTGATTATTGTGGGTTTGGACAACGCTGGAAAGACCACCATCCTCTACCAattTTTAACGAAAGAAGCAGTACAAACGTCTCCCACAATTGGAAGCAACGTAGAGGAAATCGCCATAAAGAAGACACGCTTTCTTGTCTGGGATATTGGAGGGCAGGAGAGTCTCAGAGCTACCTGGAACTCCTATTACACGAATACagagATTATCATCCTGGTGGTTGACAGCACTGATCGAGAACGCCTGACTGTAACTAAAGAGGAGCTTCATCGCATGCTGGCACACGAGGATCTCCAGAATGCATCAGTGCTGGTTTTGGCAAATAAACAGGACATGGAGGACAGTATGACTGCAGCAGAAATCTCTCAGAGTCTAACCCTCAGTTCACTCACCGCTCGATCCTGGCATGTGCAGGCCTGCTGCGCGCTCACCGGGGAAGGTTTACCAGCCAGTCTAGACTGGATGCGCTCCCGTGTCGTGGCGAATTAGTCCATCAGCAGCGCTTTCTTCAACCTCTGGAGCTGTTAAACGAGAGATCAGGCCTGATTTGACTTTTATTAATCTGTCTCTCAGTGAAATGGAGTAATCTGAAGGAACAAACAAACTCTGGAGACCTGAATGGACTctctgcgcgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaatgtgtatgtgtgtatacacgTTTGTGTTCGTACAATATGTGACTCCGTTCTAGAGGTCCACATGTTTACATTATACTGACGCCTGAAATGATCGTGTGAAATGATCATGATGTGTTGGTGCCACTGTATTGGCTGTGCTGACGACCAGGAGCCATTGTCTGCCGAGAGGCTTTGTGATGAGCCCACTAAGCTATTGAACAAACATTACTTGAAGTATTTAAAGTGAACTGATGATTTGTGTGTTGCGCATGCTGTATGGAGCCTAGTGTTcaagtattttatttttgaaagtagACCGGATATTCATATGTTTTCTTATATAAATTTTGTACAAAACCATTGTGTACAAATGAAAAACTTA
>TCONS_00051169
AATTCACAGCGTTCAGAAATGGGACTCCTGTTCGCCAAACTGATGACTCTGTTCGGAGACAGAGAACACAAAGTGATTATTGTGGGTTTGGACAACGCTGGAAAGACCACCATCCTCTACCAattTTTAACGAAAGAAGCAGTACAAACGTCTCCCACAATTGGAAGCAACGTAGAGGAAATCGCCATAAAGAAGACACGCTTTCTTGTCTGGGATATTGGAGGGCAGGAGAGTCTCAGAGCTACCTGGAACTCCTATTACACGAATACagaggtgtgtatgtgtgcacctGCATGATGTGCTGCTCTCATAAAAGTCTAATGCTGGTTGTTGTGTGTTGTTCCTGGAATGCACTTTCATCAAATGTATAATCTGAATCCTTCTGCAGATTATCATCCTGGTGGTTGACAGCACTGATCGAGAACGCCTGACTGTAACTAAAGAGGAGCTTCATCGCATGCTGGCACACGAGGATCTCCAGAATGCATCAGTGCTGGTTTTGGCAAATAAACAGGACATGGAGGACAGTATGACTGCAGCAGAAATCTCTCAGAGTCTAACCCTCAGTTCACTCACCGCTCGATCCTGGCATGTGCAGGCCTGCTGCGCGCTCACCGGGGAAGGTTTACCAGCCAGTCTAGACTGGATGCGCTCCCGTGTCGTGGCGAATTAGTCCATCAGCAGCGCTTTCTTCAACCTCTGGAGCTGTTAAACGAGAGATCAGGCCTGATTTGACTTTTATTAATCTGTCTCTCAGTGAAATGGAGTAATCTGAAGGAACAAACAAACTCTGGAGACCTGAATGGACTctctgcgcgtgtgtgtg

Function

symbol description
arl5c Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Is expressed in several structures, including basal plate midbrain region; midbrain; presumptive diencephalon; segmental plate; and thymus. Orthologous to human ARL5C (ADP ribosylation factor like GTPase 5C).

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:1903292 protein localization to Golgi membrane biological_process
GO:0005802 trans-Golgi network cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1866 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Is expressed in several structures, including basal plate midbrain region; midbrain; presumptive diencephalon; segmental plate; and thymus. Orthologous to human ARL5C (ADP ribosylation factor like GTPase 5C).

Ensembl:

ensembl_id ENSDARG00000035719

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051168 False 1457 mRNA 0.45 6 16134376 16142057
TCONS_00051169 True 826 lncRNA 0.47 5 16134765 16141700

Neighbor

gene id symbol gene type direction distance location
XLOC_026234 lasp1 coding downstream 24025 16072966 ~ 16110351 (-)
XLOC_026233 NA coding downstream 65839 16064873 ~ 16068537 (-)
XLOC_026232 atp6v0ca coding downstream 78913 16044680 ~ 16055463 (-)
XLOC_026231 spsb3a coding downstream 94757 16018202 ~ 16039619 (-)
XLOC_026230 mrps34 coding downstream 123408 16003122 ~ 16010968 (-)
XLOC_026236 cacnb1 coding upstream 15063 16157120 ~ 16227683 (-)
XLOC_026237 NA coding upstream 90452 16232509 ~ 16289826 (-)
XLOC_026238 eftud2 coding upstream 246963 16389020 ~ 16413635 (-)
XLOC_026239 si:ch211-23l10.3 coding upstream 330949 16473006 ~ 16493528 (-)
XLOC_026240 eps8l1a coding upstream 371162 16513219 ~ 16537441 (-)
XLOC_026225 NA non-coding downstream 427609 15685784 ~ 15706767 (-)
XLOC_026221 NA non-coding downstream 498868 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 508856 15618257 ~ 15625520 (-)
XLOC_026205 CR788308.1 non-coding downstream 1246208 14888052 ~ 14888168 (-)
XLOC_026241 NA non-coding upstream 490053 16632110 ~ 16664028 (-)
XLOC_026245 BX470185.2 non-coding upstream 758186 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1460429 17602486 ~ 17604149 (-)
XLOC_026249 NA non-coding upstream 1801232 17943289 ~ 17944235 (-)

Expression


Co-expression Network