XLOC_026236 (cacnb1)


Basic Information

Item Value
gene id XLOC_026236
gene name cacnb1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16157120 ~ 16227683 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051170
ATGGTACAGGAGGGTAATATGTCCAGGACGCCTTCCACCTCAACCCAGGAAATCCAAATGGACATGTTCGACCACCACGGCTCTCACGCTCAgGGGAAGTATGCAAAGAGAAAGAGTCGCTTCAAACGCTCAGATGGAAGCACCTCCTCCGACACGACCTCCAACAGCTTTGTTCGACAGGGCTCGGCAGACTCCTACACCAGTCGTCCTTCAGACTCTGACGTGTCTCTGGAGGAGGACCCTGAGGCTCTCAGGAAAGAAGCCGATAGACAAGCTCTTGCCACCCTGGAGAAGGCTAAGACCAAGCCTGTAGCGTTTGCAGTGAGGACTAACGTTGGCTATAACCCAGGCCCTAATGATGATGTGCCTGTTCAGGGCATGGCCATCTCTTTCGAACCCAAAGACTTCCTGCACATCAAAGAGAAGTATAATAATGACTGGTGGATCGGGCGTTTGGTGAAGGAGGGATGTGAGGTGGGCTTTATCCCCAGTCCAGTGAAGCTCGAGAGCACTCGGCAGTTACAAGAACAGAGAATGAGACAGAACCGCCTTAGTTCCAGTAAGTCTGGTGGAAGCTCTAGCCTGGACGTCGCCACAGGTGCCCGCAGGCCCACTCCTCCTGGAACAGGTGGGCCTGCCAAACAGAAACAGAAATCGATGGAACATGTTCCTCCTTACGATGTGGTGCCTTCCATGAGACCCATTATTTTAGTGGGGCCGTCCCTTAAAGGCTATGAGgtcaCAGATATGATGCAGAAAGCTCTCTTCGACTTTCTAAAACACAAATTTGAGGGCAGAATATCCATCACCCGGGTGACAGCCGACATCTCACTTGCCAAACGCTCCGTCCTTAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACCAGATCCAGCCTGGctGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCTCGGACGCTTCAGTTAGTGGCTCTGGATGCAGACACAATTAACCATCCATCTCAACTGGCCAAGACCTCACTGGCACCAATCATAGTCTATATCAAGATCGCCTCTCCAAAGgTGTTGCAGAGGCTGATAAAGTCCAGGGGAAAATCTCAGGCCAAACATCTCAATGTCCAAATGGTGGCAGCTGATAAACTGGCACAATGTCCTCCTGAGCTGTTTGACATAATCTTAGATGAGAATCAGCTGGAGGATGCGTGTGAACATCTGGCTGAATACCTGGAAGCTTACTGGAAGGCCACACATCCACCAAGCAGCAACCCGCCCAACCCTCTGCTGAACCGCACCATGGCCACAGCCGCCCTGGCCGCTTCGCCCGAACCCGTCTCCAACCTGCAGGGGCCGTTCCTGGTGCATGGAGAGCAGAAGAGGGAAATGCCTGAACGTGGCGGCCTGCAAGACTACCAGAGTGACCTGAGCGGAAAGCAGCCACTGCGCTCCTCACGCAGCCAGCTGCAAACAGGCAGCCGGGGTCTCTCTCGTCAGGACACATTTGACTCTGAGACCCAGGGCAGCCGTGATTCTGCATACACCGATGACATGGAGACCGATCCATATGAGGAGCCTGACCCATGCCGCTCATACCGGCTGAACCCAGCCCACCACGCTCCGCGCCAGGCCTCCTGGGAGGACGAAGGGGCGGAGCCTGACCAGGAGAACCTCAACATGGTCCCACCTCCAGCCAATCAGCATCAGCGTGGGCGAGGCAAGCTGAGGGAGCGCTACTGTCAGGACGCAGAAGCCGGAGGAGCTACGACAGGCCGCAACCACAACCAGGAGGAGTGGAGCAGAGACGTGTACATTCGCTAGAGCAGGTTTACCTGAACACACCCAGTAGAATCTCTAGTTTGGATCTGTTTACAACCCAGAGAAACACACAATCATTGACAGACGCTGTACAGCTCGCCACATTCACAACACGCTAGCTCTCTTCCATTGCATCTTTAGTTTTTGAGGACGATACACTAACCCACAAAAGTTTGGAAGAGTGAAGATGAGTGATGTTTTTGAAAGACGACTTTCATGCttgaaaaatacttt
>TCONS_00051171
ACTGAGCTCGTTGTATTTGCTAAGGGAGAGGGTTTCAGCAGGGCTGGGGGCGCAACAGCGCGGTGACAAGCCATCTGCGAGGAGGAAAAGCACCTTCATCTGTTTAATTTTACGTTGAATTATTTCACAATGCATAACGAACTCAAATCAGGCTCCAAATGAAACAGTAAAACCGAAGTTAAAGTTTAAATCAATGGTACAGGAGGGTAATATGTCCAGGACGCCTTCCACCTCAACCCAGGAAATCCAAATGGACATGTTCGACCACCACGGCTCTCACGCTCAgGGGAAGTATGCAAAGAGAAAGAGTCGCTTCAAACGCTCAGATGGAAGCACCTCCTCCGACACGACCTCCAACAGCTTTGTTCGACAGGGCTCGGCAGACTCCTACACCAGTCGTCCTTCAGACTCTGACGTGTCTCTGGAGGAGGACCCTGAGGCTCTCAGGAAAGAAGCCGATAGACAAGCTCTTGCCACCCTGGAGAAGGCTAAGACCAAGCCTGTAGCGTTTGCAGTGAGGACTAACGTTGGCTATAACCCAGGCCCTAATGATGATGTGCCTGTTCAGGGCATGGCCATCTCTTTCGAACCCAAAGACTTCCTGCACATCAAAGAGAAGTATAATAATGACTGGTGGATCGGGCGTTTGGTGAAGGAGGGATGTGAGGTGGGCTTTATCCCCAGTCCAGTGAAGCTCGAGAGCACTCGGCAGTTACAAGAACAGAGAATGAGACAGAACCGCCTTAGTTCCAGTAAGTCTGGTGGAAGCTCTAGCCTGGACGTCGCCACAGGTGCCCGCAGGCCCACTCCTCCTGGAACAGGTGGGCCTGCCAAACAGAAACAGAAATCGATGGAACATGTTCCTCCTTACGATGTGGTGCCTTCCATGAGACCCATTATTTTAGTGGGGCCGTCCCTTAAAGGCTATGAGgtcaCAGATATGATGCAGAAAGCTCTCTTCGACTTTCTAAAACACAAATTTGAGGGCAGAATATCCATCACCCGGGTGACAGCCGACATCTCACTTGCCAAACGCTCCGTCCTTAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACCAGATCCAGCCTGGctGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCTCGGACGCTTCAGTTAGTGGCTCTGGATGCAGACACAATTAACCATCCATCTCAACTGGCCAAGACCTCACTGGCACCAATCATAGTCTATATCAAGATCGCCTCTCCAAAGgTGTTGCAGAGGCTGATAAAGTCCAGGGGAAAATCTCAGGCCAAACATCTCAATGTCCAAATGGTGGCAGCTGATAAACTGGCACAATGTCCTCCTGAGCTGTTTGACATAATCTTAGATGAGAATCAGCTGGAGGATGCGTGTGAACATCTGGCTGAATACCTGGAAGCTTACTGGAAGGCCACACATCCACCAAGCAGCAACCCGCCCAACCCTCTGCTGAACCGCACCATGGCCACAGCCGCCCTGGCCGCTTCGCCCGAACCCGTCTCCAACCTGCAGGTACAGGTGCTCACTTCCCTGCGGCGCAACATGGAGCTCCTCGACGGCTCCCCCGCTGTGATGCAGGGCCAACAAGAGGACGAACATGCCCTCTAAGACACATAATAAAGGGTCCCAGACCCGTCTCCCAATCACA
>TCONS_00051173
ATGGTACAGGAGGGTAATATGTCCAGGACGCCTTCCACCTCAACCCAGGAAATCCAAATGGACATGTTCGACCACCACGGCTCTCACGCTCAgGGGAAGTATGCAAAGAGAAAGAGTCGCTTCAAACGCTCAGATGGAAGCACCTCCTCCGACACGACCTCCAACAGCTTTGTTCGACAGGGCTCGGCAGACTCCTACACCAGTCGTCCTTCAGACTCTGACGTGTCTCTGGAGGAGGACCCTGAGGCTCTCAGGAAAGAAGCCGATAGACAAGCTCTTGCCACCCTGGAGAAGGCTAAGACCAAGCCTGTAGCGTTTGCAGTGAGGACTAACGTTGGCTATAACCCAGGCCCTAATGATGATGTGCCTGTTCAGGGCATGGCCATCTCTTTCGAACCCAAAGACTTCCTGCACATCAAAGAGAAGTATAATAATGACTGGTGGATCGGGCGTTTGGTGAAGGAGGGATGTGAGGTGGGCTTTATCCCCAGTCCAGTGAAGCTCGAGAGCACTCGGCAGTTACAAGAACAGAGAATGAGACAGAACCGCCTTAGTTCCAGTAAGTCTGGTGGAAGCTCTAGCCTGGACGTCGCCACAGGTGCCCGCAGGCCCACTCCTCCTGGAACAGCTGACTTGTCCTCGGGGCTTTATGACGATGCTTTGGATTCGGATGTTGAGGAGGCGGAGACTGCCGACACCCGCGACCATAAGGGTGTGGGCGGAAGTGTCACCTCCCCTCAAGGCAACCTGCCCCGCCTCCCTTTCTTTAAGAAGATGGAACATGTTCCTCCTTACGATGTGGTGCCTTCCATGAGACCCATTATTTTAGTGGGGCCGTCCCTTAAAGGCTATGAGgtcaCAGATATGATGCAGAAAGCTCTCTTCGACTTTCTAAAACACAAATTTGAGGGCAGAATATCCATCACCCGGGTGACAGCCGACATCTCACTTGCCAAACGCTCCGTCCTTAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACCAGATCCAGCCTGGctGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCTCGGACGCTTCAGTTAGTGGCTCTGGATGCAGACACAATTAACCATCCATCTCAACTGGCCAAGACCTCACTGGCACCAATCATAGTCTATATCAAGATCGCCTCTCCAAAGgTGTTGCAGAGGCTGATAAAGTCCAGGGGAAAATCTCAGGCCAAACATCTCAATGTCCAAATGGTGGCAGCTGATAAACTGGCACAATGTCCTCCTGAGCTGTTTGACATAATCTTAGATGAGAATCAGCTGGAGGATGCGTGTGAACATCTGGCTGAATACCTGGAAGCTTACTGGAAGGCCACACATCCACCAAGCAGCAACCCGCCCAACCCTCTGCTGAACCGCACCATGGCCACAGCCGCCCTGGCCGCTTCGCCCGAACCCGTCTCCAACCTGCAGGTACAGGTGCTCACTTCCCTGCGGCGCAACATGGAGCTCCTCGACGGCTCCCCCGCTGTGATGCAGGGCCAACAAGAGGACGAACATGCCCTCTAA
>TCONS_00051172
ATGGTACAGGAGGGTAATATGTCCAGGACGCCTTCCACCTCAACCCAGGAAATCCAAATGGACATGTTCGACCACCACGGCTCTCACGCTCAgGGGAAGTATGCAAAGAGAAAGAGTCGCTTCAAACGCTCAGATGGAAGCACCTCCTCCGACACGACCTCCAACAGCTTTGTTCGACAGGGCTCGGCAGACTCCTACACCAGTCGTCCTTCAGACTCTGACGTGTCTCTGGAGGAGGACCCTGAGGCTCTCAGGAAAGAAGCCGATAGACAAGCTCTTGCCACCCTGGAGAAGGCTAAGACCAAGCCTGTAGCGTTTGCAGTGAGGACTAACGTTGGCTATAACCCAGGCCCTAATGATGATGTGCCTGTTCAGGGCATGGCCATCTCTTTCGAACCCAAAGACTTCCTGCACATCAAAGAGAAGTATAATAATGACTGGTGGATCGGGCGTTTGGTGAAGGAGGGATGTGAGGTGGGCTTTATCCCCAGTCCAGTGAAGCTCGAGAGCACTCGGCAGTTACAAGAACAGAGAATGAGACAGAACCGCCTTAGTTCCAGTAAGTCTGGTGGAAGCTCTAGCCTGGACGTCGCCACAGGTGCCCGCAGGCCCACTCCTCCTGGAACAGCTGACTTGTCCTCGGGGCTTTATGACGATGCTTTGGATTCGGATGTTGAGGAGGCGGAGACTGCCGACACCCGCGACCATAAGGGTGTGGGCGGAAGTGTCACCTCCCCTCAAGGCAACCTGCCCCGCCTCCCTTTCTTTAAGAAGATGGAACATGTTCCTCCTTACGATGTGGTGCCTTCCATGAGACCCATTATTTTAGTGGGGCCGTCCCTTAAAGGCTATGAGgtcaCAGATATGATGCAGAAAGCTCTCTTCGACTTTCTAAAACACAAATTTGAGGGCAGAATATCCATCACCCGGGTGACAGCCGACATCTCACTTGCCAAACGCTCCGTCCTTAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACCAGATCCAGCCTGGACTTACTGGctGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCTCGGACGCTTCAGTTAGTGGCTCTGGATGCAGACACAATTAACCATCCATCTCAACTGGCCAAGACCTCACTGGCACCAATCATAGTCTATATCAAGATCGCCTCTCCAAAGgTGTTGCAGAGGCTGATAAAGTCCAGGGGAAAATCTCAGGCCAAACATCTCAATGTCCAAATGGTGGCAGCTGATAAACTGGCACAATGTCCTCCTGAGCTGTTTGACATAATCTTAGATGAGAATCAGCTGGAGGATGCGTGTGAACATCTGGCTGAATACCTGGAAGCTTACTGGAAGGCCACACATCCACCAAGCAGCAACCCGCCCAACCCTCTGCTGAACCGCACCATGGCCACAGCCGCCCTGGCCGCTTCGCCCGAACCCGTCTCCAACCTGCAGGTACAGGTGCTCACTTCCCTGCGGCGCAACATGGAGCTCCTCGACGGCTCCCCCGCTGTGATGCAGGGCCAACAAGAGGACGAACATGCCCTCTAA
>TCONS_00051174
GACTTCCTCTCTCTGAAGACCAAGCCTGTAGCGTTTGCAGTGAGGACTAACGTTGGCTATAACCCAGGCCCTAATGATGATGTGCCTGTTCAGGGCATGGCCATCTCTTTCGAACCCAAAGACTTCCTGCACATCAAAGAGAAGTATAATAATGACTGGTGGATCGGGCGTTTGGTGAAGGAGGGATGTGAGGTGGGCTTTATCCCCAGTCCAGTGAAGCTCGAGAGCACTCGGCAGTTACAAGAACAGAGAATGAGACAGAACCGCCTTAGTTCCAGTAAGTCTGGTGGAAGCTCTAGCCTGGACGTCGCCACAGGTGCCCGCAGGCCCACTCCTCCTGGAACAGGTATGATCACACCATAACGCTGTGAGTTTTCACGTTGTGTTGTGATAAAGATATAACATCCCTGTcattatataaacacatacagacacagaAGGTAAAGCCATGAGTTTATACTGGCTTAATCATTAAACGCGATGGTTAGATAGTTAGAGCGTCCTCTTAGGATCCCCTCTGCCCTCTTCTCTTCTCTCTTATCATTCATTCTTCTAGTCTTCCAGCTTTTATCTTGTTTTTATCTCTCTCATTTCTCTTGATgggcatcatcatcatcatctgtagTTTGAAATCTTACTCATAGTTTTGTTTGGTTTATGAGATCTGTTATGgaggttattttttgtttt

Function

symbol description
cacnb1 Enables voltage-gated calcium channel activity. Acts upstream of or within muscle contraction and voltage-gated calcium channel complex assembly. Part of voltage-gated calcium channel complex. Is expressed in several structures, including basal plate midbrain region; hatching gland; musculature system; nervous system; and polster. Orthologous to human CACNB1 (calcium voltage-gated channel auxiliary subunit beta 1).

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:1901385 regulation of voltage-gated calcium channel activity biological_process
GO:0070978 voltage-gated calcium channel complex assembly biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0016020 membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG:

id description
ko04010 MAPK signaling pathway
ko04921 Oxytocin signaling pathway
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-040718-399 Enables voltage-gated calcium channel activity. Acts upstream of or within muscle contraction and voltage-gated calcium channel complex assembly. Part of voltage-gated calcium channel complex. Is expressed in several structures, including basal plate midbrain region; hatching gland; musculature system; nervous system; and polster. Orthologous to human CACNB1 (calcium voltage-gated channel auxiliary subunit beta 1).

Ensembl:

ensembl_id ENSDARG00000002167

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051170 False 2043 mRNA 0.53 14 16157120 16227490
TCONS_00051171 False 1670 mRNA 0.52 13 16161478 16227683
TCONS_00051173 False 1554 mRNA 0.54 13 16161518 16227490
TCONS_00051172 False 1563 mRNA 0.54 14 16161518 16227490
TCONS_00051174 True 690 lncRNA 0.44 3 16183371 16191813

Neighbor

gene id symbol gene type direction distance location
XLOC_026235 arl5c coding downstream 15063 16134376 ~ 16142057 (-)
XLOC_026234 lasp1 coding downstream 46769 16072966 ~ 16110351 (-)
XLOC_026233 NA coding downstream 88583 16064873 ~ 16068537 (-)
XLOC_026232 atp6v0ca coding downstream 101657 16044680 ~ 16055463 (-)
XLOC_026231 spsb3a coding downstream 117501 16018202 ~ 16039619 (-)
XLOC_026237 NA coding upstream 4826 16232509 ~ 16289826 (-)
XLOC_026238 eftud2 coding upstream 161337 16389020 ~ 16413635 (-)
XLOC_026239 si:ch211-23l10.3 coding upstream 245323 16473006 ~ 16493528 (-)
XLOC_026240 eps8l1a coding upstream 285536 16513219 ~ 16537441 (-)
XLOC_026241 NA coding upstream 404427 16632110 ~ 16664028 (-)
XLOC_026225 NA non-coding downstream 450353 15685784 ~ 15706767 (-)
XLOC_026221 NA non-coding downstream 521612 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 531600 15618257 ~ 15625520 (-)
XLOC_026205 CR788308.1 non-coding downstream 1268952 14888052 ~ 14888168 (-)
XLOC_026245 BX470185.2 non-coding upstream 672560 16900243 ~ 16903280 (-)
XLOC_026246 NA non-coding upstream 1374803 17602486 ~ 17604149 (-)
XLOC_026249 NA non-coding upstream 1715606 17943289 ~ 17944235 (-)

Expression


Co-expression Network