G712061 (LOC106568643)


Basic Information

Item Value
gene id G712061
gene name LOC106568643
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 46122767 ~ 46126238 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU809550
GTGGCATTAGGCCTTTATTAATACAAAAAGAAAACAATCATGAATATATGCGATGCTGCTTGCACGTGTCACATACCACAATGCATATCAATGACAAGTGTTGTTTTCCATCAATATAGCATACCCATTCGACTTTCATCAATCCTATTTTTATCTGACAATAGCAGGCCACAGGGGAGGTTTTTGGAGATCCAGTTGCCAGTTTTGATTCAATTGGTCTAACATTGGGCTACATTGTCTAAATTAAATAAGAGGTTGATTTAGAACACAAACGTACTTCTTATTCTTCATTTGCATGGTTACACATATTAATGAGAATTTCAATACAAAATATGCTAATGTCCTTTTATCTAAAGTATATGTATCACTACAcagaaaacaaacaaataaacaaaataataGTGCCAATGAATAAAAGGATGTGCCTTATTGCAGGATACAATCCCAGAATCAATGTAGCTGGTTAATTTGCTAAGAACAGCGACAATGCCTGGATGGTGAACTCAAGAAAACATTGGCACTTTTAGGAAATATTTGGCAAGGGGTCTGGCAAAAGATAATAAAAAAAGTGACTACACATTTTTGTAAATTATGTAGCACACATACTTCATTGACAATCATTTCCTGTGAATTAGTAAGAAACAATTCAACTACACACCACTACCTATTGTACTTCTCATTACTCATTGCCATCAATACTTTGGGCTCAAATCAGGCGAATCCACATTACTTAGGCCTAATGCATTAGTATATTAACATACACGTTTCTTTGTGGTTGAACATGAATTACTGTAGGTCTACAAGTTAGACTCAGCCCACAGATATGTGAGCACAGCAGAATGTACATTTCCCTTTGGATCGTTGATGCCATTATTAGCATAACAAATTAAAGCAATGCATCTCTACGTGATCAAAAGAAGGGCATAAACATGCTGTAAACTGTATTCAGAAAAAAATTACTTTGAAATATTAGGTTGCTTTGTAATCTTTATACACGTGTTACCTTTTCTGTCGAAGTCCTCATAGTGTTGCACAGAATTACATCAGTGCTCAAAACCTTCTAGTGCCATAAATGTTACAGGTACCCCTAAAGCCATTTACATGACTTAATGCTTtcctcaaatatatatttttattttcttattaaCACTAGTACACTACACAATCATACACACTACGATCTAGTTATCTTCAGACCACTGAAATTAAATTCACAGCGCATAGTTCAGTTGAAAGATGACATTTAACTCTCAAGCTTTGCATGACCTCTTGTAATAGAAAAGCATTTTATTCCAGGCTAAATAGTTAGTGTGCTTTTCGACCATATGGATACATTTTGATTCAACATTATCTTCAACTGTTATTACGATGCGTCTGCTTGTTAATGGCTAAATTAAAAGTTACCTACTGCATCTTGTCTGTAACCTTGCCATAGAACCCATTGTAACCAAATGGTCAATCATTGTTGGATTTTGAAACACACAGAACCCTATCTGTCATTCatatctatatacagtagttTTATATCTGTATAGCTTGACTTTTTCAAACTCTTCAGAGGCCAGCTGAGATCTGTGTTGACCAATATCATGATTACGGTTATGCTATGTACAACATTTTACATTCAGATTTAAGATCAATATCATACACAAACTTCCTCAACCTTCAGAATCACCTCAAAGGTACTTTGcaatctctcttttctcctttcaGTTAAACTCTTTTCCCTTCCAaacactttgtggaaattaatttCTAACTTGCAAGCGTTTTTTCTTGACTAGTCAAAGAAATCGATTAGCAACCAAACATCTGGGAAcaatttgtttttgtgtgtactTAACTTTAACGCCAAAAGCAACATAGCAGTTCATGTACAGTAGTTACCAATGTGCCCAATCATTATGTACTGTTGCCCCAAACAACCCCTGACCTGAATTCATCCCAATATGTCTTTCCATGAAAATGTTACATTTTACATATTTCTCTGTGTTCTTGTGTGAATGTGTCCACGTACATTTACAACCCATATCGTTAAAAATCATTCCAAAGTTGAAAATAATAACAGCCAATTTCAATGACACGTGACAGTGGGTCACTAACCTACCAACATCTGACACCCCAGAAACACAATCTTTATAGATAACAGGTCAGTCACAGAACTCCTTCCACTCCTCTGTCGACTGGTcagtatacacagtaccagtcaaaagtgtggacacacctactcattcaagggtttttctttatctttactattttctacattgtagaataatagtgaagacatcaaaactatggaataacacatatggaatcatgtagtaaccaaaaaattgtccttttccttgatgacagctttgcactctccgGGCATTCTATCAACCACTTTCACATGAttcatatatgttatttcatcgtttcgatgtcttcactattattctacaatgtagaaaattgtaaaaataaagaaaaacccttgaatgaatagttgtgtccaaacttttggctggtactgtatattcaacAGATGTATCGCTTTGATTTTTAAACGGATTGATAATGTAAATTGTCTGTCGTCGATGTTGATTCGTCACAGACAATCTCTCTTGCAAGGCACCGCAAGCTCTCTTCCTACCCGGCTTCACTTCCTATTTTGGTGACTTCTCGTTGTGTTGCGGCAACATGCTGGAGATCTACTTCCTGTCGTATTCGTCCTCCTTGCCCTCTTCCACTGCCTCCACAGTGAATTTCCCTACCTCCCCTATCCGGATGGCGGCCGGCTCCTCCACGGGACCCTCCCTCTTGGTTTCCCTTTCCGTTACAACCTCCGTGTAGGTTACTACTGGGGTTTTACTGACTTCCGGGCTTTTTCTTCCCTTGACTGGGGTCACCGCCTCATCGACCTCCCCGTCAGCCTCAGCTCCCTCCTGGCCCTCGGCCacggtcctctccttcttcagcTTGATGCGGAAGGACTCCTTGGTGGGGGCCTTCTTGGCGATGTTCTCCTTCAGCCTCTCGCCAGAGTGCTTGATGCGCTCGCTGGCCTGGTGCATCTTCTCCCGTCTTTCGGGGGGCACCATTTTCTCGCCCATGTTGTGGAACTTGGTGCCCAAGTTGTCCTTGGTCTTGGTCATGGTCTCCTTGGAGAAGGCCTGCTTGATGCTTTCAATGCCCTTCATGCCTGACGCCTTCAAGCGGGCAGTTCTGGATCCTCCTTCAGTCTCGTCCACTGTCATGTATTCCTCATCTGAGGAGATGTCCCCGGGGACATCGTAGGTGTCTGGCTCGATCACCAACCCCTCCATACCAACAACTCCTTTTGGGGTCTTTGTCACGGCCACCGAAGGGATCTCATGTTCCCCCTAAAGAAAGGCAAATGAACAAATAAATAAAGTACAATAATATGGGTTGGCTTCT

Function

NR:

description
muscle-related coiled-coil protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU809550 True 3423 lncRNA 0.40 2 46122767 46126238

Neighbor

gene id symbol gene type direction distance location
LOC110529944 LOC106568640 coding upstream 113779 46003081 ~ 46008988 (+)
LOC110529945 LOC106568641 coding upstream 147759 45964664 ~ 45975008 (+)
stard3nl stard3nl coding upstream 362528 45725701 ~ 45760239 (+)
epdr1 LOC106568636 coding upstream 414255 45692358 ~ 45708512 (+)
ranbp9 ranbp9 coding upstream 446382 45651211 ~ 45676385 (+)
slc39a6 slc39a6 coding downstream 138402 46264640 ~ 46293864 (+)
cldn15la LOC106568649 coding downstream 226548 46352786 ~ 46356523 (+)
saga LOC106568650 coding downstream 236407 46362645 ~ 46376820 (+)
LOC110529955 NA coding downstream 252201 46378439 ~ 46384254 (+)
proca proc coding downstream 272781 46399019 ~ 46406905 (+)
G712079 NA non-coding upstream 68757 46053799 ~ 46054010 (+)
G712074 NA non-coding upstream 72287 46050136 ~ 46050480 (+)
G712052 NA non-coding upstream 124295 45998083 ~ 45998472 (+)
G712051 NA non-coding upstream 124868 45997660 ~ 45997899 (+)
G712049 NA non-coding upstream 125600 45996957 ~ 45997167 (+)
G712121 NA non-coding downstream 16501 46142739 ~ 46144022 (+)
G713292 NA non-coding downstream 119841 46246079 ~ 46246404 (+)
G713340 NA non-coding downstream 192409 46318647 ~ 46373541 (+)
G713366 sft2d3 non-coding downstream 336389 46462627 ~ 46463602 (+)
G713371 NA non-coding downstream 337604 46463842 ~ 46464558 (+)
G711912 NA other upstream 328218 45793269 ~ 45794549 (+)
G711845 NA other upstream 475390 45646857 ~ 45647377 (+)
G711021 NA other upstream 1673794 44448584 ~ 44448973 (+)
G709490 NA other upstream 2925125 43196560 ~ 43197642 (+)
G708448 NA other upstream 4738584 41380025 ~ 41384183 (+)
G713405 NA other downstream 339160 46465398 ~ 46466227 (+)
G713574 NA other downstream 589677 46715915 ~ 46769246 (+)
G716035 LOC106581475 other downstream 2411505 48537743 ~ 48544164 (+)
G716133 NA other downstream 2634105 48760343 ~ 48760740 (+)
G716862 NA other downstream 3206603 49332841 ~ 49333772 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000462_00027352_00030136 NA coding CI01000462 null 26030 ~ 30643 (+)