XLOC_026241


Basic Information

Item Value
gene id XLOC_026241
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16632110 ~ 16664028 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052986
GCCAAAGGCTCACATTCGAGCTATCAAGGGTCTCGCACATAGACAGTAAGGTCTCGCAAAGattcCTGTCGGCCATTTTGACTTCTGAATCAACGGCCACTCTGTTTTCATCTGAGACTCTTCTCTAATATCACTGCAGACAAATGTACATCTTGaatgacctgaggGTAATCGGCCAGTTGTCCTCCGATTGGCACAATGATGGTCATCACTAAATGAGGAAGAGCAGACACCATCCCCACCTGAGCAGCAGACGGAGCAAAAAGAGAGGTTTTTGAACAAATCAGGTTTACGATATCGCCTAATATACACATCCTGCTGAACAGCCGAACACCTCCTCGAAATAAGCGGGCTGGCTGATGAGGAGCAGGTAGAAGGTCCAGCTTCTGCAGAAGTTGGCTACGATGATGGCATACACTGGCATGGAGGGGGTTGACCAGGCCAGCGCTTTCCCCGATGGCGTCCTCAATGTACTTCCTCTCCTCTGGTGTAATTGTCGGGTGAGCAGCTGGACTCTCATAGGACACTAAAATCCAGAAGAGATACCAGAAGATCCCAACACTTCCTGCGAGTCAAAGAGAAATGGAATGCTGTTGTTGCCAGTCGGCTTCTTTCAAGCGGTGGAGCCCATTTGGCCCAGATCCCATGACACGCTGGGTACGACACCCCCTTGAAGCGGACAAATGAGATGAATTAATGTGCACCCATAATACACTGATACTGACCACTATGACGGGCTTCTTTCCGGAGTAAACCGTGTGGTCGTTCACCATGCTGACGATGGCTACACCCAGGTTACAGCGGATGCCGAAAGAGATGCAGAAGCCCAGGCCGGACAGGATGGCGATGATGTAGCGGCGAGGCAAACCAAAACACGTGCAGTCCACGATGGGAAGCTCCTTCTCCTCCACCAGCTCGGGACGTCCCTCAGCTGACAGCTCGATCGTCTCTCCATTCTGCTGCCGCTTCTCCAGGAGTCTGCAGGTATGAAGTCCCATACACTGGGGAACCCTCACAGGTCGTAAAACTACATCACAAACACGGCTGAAAGCAGGTGGGATGCAGAGGGAAGACACAGAGGGAGAGAGGACATGGAGCAAGAATGAAGCGGCTCTGGATAGCAGAACATGGGAGTCCAGCAGAGACCTAAAGAGAGACCATCTGGGTACGCAACCTGTCTGCGACGTTTACAGCCAATAACAACTCGCATGCATGCACGCACTCAAGCAAACACTTTCACAGGCACATGACTCATTCCAGAATTGCGGGTACATTTCAACATTTTCCACTCGCTTTCTTTCAACTGAAATGTTATACAACAAATGTGTAATTTATACAGTATCAATTTAAAAGGATGcttaaaaaaagcttaaatgtGACATAGGGAACATTTGATTTTGTTGCTAACTGTTGTTTCATTCATTGTTAAGCTTTTTAAAccaataacagagttgataatAACTGAGCAGACAATAACAGAGTTCACATTTTCCATTATTTTGTGCTTaagctcaagatgctaacctcaagCCAGATTCGCATGGCATGTCTTAAACAGATTCTTAAGTATTTTCATCATCAGTACATTTTTCAAAAAGTGAATGAGAAATTCACTGGAATATCACAATAACAGGGTTGACACATTGTTAATCTACTATTGGTGTGTActaaacattttgtacaaattaataAGAGAAGAATAATGACATGCACCAATGCCTTCCAGAGATTCCCGCCACAGGAAGTGATATCACTTGGAGCAAGTCCC
>TCONS_00051187
attcCTGTCGGCCATTTTGACTTCTGAATCAACGGCCACTCTGTTTTCATCTGAGACTCTTCTCTAATATCACTGCAGACAAATGTACATCTTGaatgacctgaggGTAATCGGCCAGTTGTCCTCCGATTGGCACAATGATGGTCATCACTAAATGAGGAAGAGCAGACACCATCCCCACCTGAGCAGCAGACGGAGCAAAAAGAGAGGTTTTTGAACAAATCAGGTTTACGATATCGCCTAATATACACATCCTGCTGAACAGCCGAACACCTCCTCGAAATAAGCGGGCTGGCTGATGAGGAGCAGGTAGAAGGTCCAGCTTCTGCAGAAGTTGGCTACGATGATGGCATACACTGGCATGGAGGGGGTTGACCAGGCCAGCGCTTTCCCCGATGGCGTCCTCAATGTACTTCCTCTCCTCTGGTGTAATTGTCGGGTGAGCAGCTGGACTCTCATAGGACACTAAAATCCAGAAGAGATACCAGAAGATCCCAACACTTCCTGCGAGTCAAAGAGAAATGGAATGCTGTTGTTGCCAGTCGGCTTCTTTCAAGCGGTGGAGCCCATTTGGCCCAGATCCCATGACACGCTGGGTACGACACCCCCTTGAAGCGGACAAATGAGATGAATTAATGTGCACCCATA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048320 axial mesoderm formation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093118

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052986 False 1768 lncRNA 0.46 8 16632110 16664028
TCONS_00051187 True 648 lncRNA 0.50 5 16643253 16659935

Neighbor

gene id symbol gene type direction distance location
XLOC_026240 eps8l1a coding downstream 94669 16513219 ~ 16537441 (-)
XLOC_026239 si:ch211-23l10.3 coding downstream 138582 16473006 ~ 16493528 (-)
XLOC_026238 eftud2 coding downstream 218475 16389020 ~ 16413635 (-)
XLOC_026237 NA coding downstream 342284 16232509 ~ 16289826 (-)
XLOC_026236 cacnb1 coding downstream 404427 16157120 ~ 16227683 (-)
XLOC_026242 pold1 coding upstream 23802 16687830 ~ 16719244 (-)
XLOC_026243 aspdh coding upstream 83289 16747317 ~ 16760923 (-)
XLOC_026244 si:dkey-30j10.5 coding upstream 116427 16780455 ~ 16784281 (-)
XLOC_026245 BX470185.2 coding upstream 236215 16900243 ~ 16903280 (-)
XLOC_026246 NA coding upstream 938458 17602486 ~ 17604149 (-)
XLOC_026233 NA non-coding downstream 563573 16064873 ~ 16068537 (-)
XLOC_026225 NA non-coding downstream 925343 15685784 ~ 15706767 (-)
XLOC_026221 NA non-coding downstream 996602 15627269 ~ 15635508 (-)
XLOC_026220 NA non-coding downstream 1006590 15618257 ~ 15625520 (-)
XLOC_026249 NA non-coding upstream 1279261 17943289 ~ 17944235 (-)
XLOC_026252 NA non-coding upstream 1445347 18109375 ~ 18292217 (-)
XLOC_026257 NA non-coding upstream 1797329 18461357 ~ 18464993 (-)

Expression


Co-expression Network