XLOC_026246


Basic Information

Item Value
gene id XLOC_026246
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 17602486 ~ 17604149 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052987
gcaAGACATTTCATTTAGGAAGAAGCAGCAGCTGAGAGATAAAGTAAATGGAAGATTTATTTAACAATGCAGGCAAGAAAGAAGCCCATAAAAGACATTCGTAGAGAAAGAATAAACCAGTATTTTTCCCCCAAACATTATTCtgacaatgaaaaagaaaagatgctcagcaacaaaaatatattcatacagctctgcaCATGCGTATATAAATACTCTGTGTAATCATAAGTTAAACACTTAAAAGCATATGCCTTTCTAAATCGAAAATTCTTCCATTATACggtatattttaatagtttactgtataaaataagttattttaaaggaTGCTGGTAAACAAACAGTTCTGGTAACTTTAACCGTATgaaaaaactactttaaatgtattCTTTTATTGTAAGAAAGTTCGACATAGATGCAACAGAACTGACATTTTTGGTTGGACTTGCCATTTAActcatttaaaaaagtcagagaagtaaaacaaaacaattctgtAGGTTAATCTGGAAGTTTCTCAAGCTGAAAGAGTTTTAAAAAGAGGCTCTGTGAAAGAATCAGTGTGATAACAGCCTGGAAATTCTGGCTCTTCATCATCTATGACTCAGTCTCGAGGGACACCATCTTAAAACCAACCAAACCTACACTTGTGAAACTGCCAATGTAACAATCACGCCATGTGgagttaaaaaataaagacataaattaaaaagaaataagtgGAAACAGATTTAACCTAAATACAATTAAGCATGACACGTACAGACCTTAAAGTTCTACTTTAATCCCAAAAAATGAGGCCTTTTTGAATCAACAGGCACAGTTCTGCACGATTTCGTGCATATCTAGCATAACCCACATACACCCACAATGCATTGCATTTGACTcaaagagttagttcacccaaaaatggacaattggttctaaacctttatgagttcctttcttccattgaacacaaaagaagatattttgaagaatgctggaaacctgtaacctttgactttcatagtagaaaaacaaatactatggaagtcaatggaggcaCATCCATAAATGATgggtgttatttgttcaaactacttgtttaaaattagctgatactacaaaattactt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052987 True 1120 lncRNA 0.33 2 17602486 17604149

Neighbor

gene id symbol gene type direction distance location
XLOC_026245 BX470185.2 coding downstream 699206 16900243 ~ 16903280 (-)
XLOC_026244 si:dkey-30j10.5 coding downstream 818205 16780455 ~ 16784281 (-)
XLOC_026243 aspdh coding downstream 841563 16747317 ~ 16760923 (-)
XLOC_026242 pold1 coding downstream 883242 16687830 ~ 16719244 (-)
XLOC_026241 NA coding downstream 938458 16632110 ~ 16664028 (-)
XLOC_026247 CABZ01018956.1 coding upstream 111536 17715685 ~ 17716322 (-)
XLOC_026248 nkiras2 coding upstream 262977 17867126 ~ 17871860 (-)
XLOC_026249 NA coding upstream 339140 17943289 ~ 17944235 (-)
XLOC_026250 si:ch73-141c7.1 coding upstream 419826 18023975 ~ 18030938 (-)
XLOC_026251 hsd17b1 coding upstream 434823 18038972 ~ 18047150 (-)
XLOC_026237 NA non-coding downstream 1312660 16232509 ~ 16289826 (-)
XLOC_026233 NA non-coding downstream 1533949 16064873 ~ 16068537 (-)
XLOC_026225 NA non-coding downstream 1895719 15685784 ~ 15706767 (-)
XLOC_026252 NA non-coding upstream 505226 18109375 ~ 18292217 (-)
XLOC_026257 NA non-coding upstream 857208 18461357 ~ 18464993 (-)
XLOC_026265 CU151886.3 non-coding upstream 1368259 18972408 ~ 18974640 (-)
XLOC_026268 BX546473.1 non-coding upstream 1603085 19207234 ~ 19216723 (-)

Expression


Co-expression Network