XLOC_002625


Basic Information

Item Value
gene id XLOC_002625
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10712178 ~ 10714227 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004883
gcttgatgactcgactgatcatcacggctgcttcgcgctccagtctctgtgtatctgtgttttcaCTGGGTGAAGAGCTGTAAAAAATGAATCTTGAGGCttgtaattttcatttaaaaaaatgatgtggtcattaaaaataatgtgcatattttcttaaaaaaatcgaTATTctggatttattataaaatattgagaGAATGTCGCTAATATAACTAGGATTTAAATTTCACTTATTTGTTTAAGCAAACCAGTGCAATTATTAGGCTTACTTTGAGAGACCagttaagctaaaaaaaattgaGGAAAGATGGCTTCacctttattttaagaaaatttacACAATTTTGTGGATTTAATTGAGATGTTTGCATTTGAATCTCAACAACGGCAGTGATCAGACGACATTTTGAAGGAGCAGATTAACATCGAGCATGTTAAGAGCAGTGATCAGGCAACAGTTAAGCAGGGTGGGCGAACAACAGTGAGCTTGTTAAGTGattaataaagaaaatgttcacagtattttcccACTGAAGAGGAGCGGTTTATTCGGGCAGATTTTGATAAAGAGAATGGGTGCCAAACAGCagACCTCACAATAAATCAAGGAGGAGATGAGAGATGTCGTCCTCTGTTGCTGGTCTATCTCTATGAATAAGAGGAGGAGCTCATCCATGAGTGCAATtgtgggaTTGCACAGAGAATTGCTGTCTGCTAGAGGAATGACCAACCATGAGGACTTCTGCCTTGTCTTGGAGGATGAGTGATTCATGACTCATGGCTAGCTTAAAAAATCTAGAATTGCTGAACTGGATTTATacaaatattccccaaattaaaatcacttacaaagaAACATATATTTCTGACACAATTCACTGCTACAACCTTTTGGGGAATTTTCActgcattgattgattgattgtgttgCTAATATTTGAGATGCAGCTTTTATACTGGTTTTATATGTTATGCAATACACACATTCTGTCAGATTTTGTCTAAAATGTGAATACTCCTACAAATGAAAGttgacagaacattttttttctatgGCATGGATAAAGGAATTTTATCAGAGATTAACATTGCTGTAAACTTTATATAGATTTGTTTAAcatattgtaccatttttttgAATCGGTGGAACGTGTAATAAAATGATATTTGgcaaaaa
>TCONS_00006009
cgatctgcttgatgactcgactgatcatcacggctgcttcgcgctccagtctctgtgtatctgtgttttcaCTGGGTGAAGAGCTGTAAAAAATGAATCTTGAGGCttgtaattttcatttaaaaaaatgatgtggtcattaaaaataatgtgcatattttcttaaaaaaatcgaTATTctggatttattataaaatattgagaGAATGTCGCTAATATAACTAGGATTTAAATTTCACTTATTTGTTTAAGCAAACCAGTGCAATTATTAGGCTTACTTTGAGAGACCagttaagctaaaaaaaattgaGGAAAGATGGCTTCacctttattttaagaaaatttacACAATTTTGTGGATTTAATTGAGATGTTTGCATTTGAATCTCAACAACGGCAGTGATCAGACGACATTTTGAAGGAGCAGATTAACATCGAGCATGTTAAGAGGTAagcattaacattttattttattatggagCAGTTTATCATTTTATTGTCTTAAATAGCCTAAGCTCTTTCAAGAAAGACAAATGCTGTTCAAGCTTGTTCAGGAGCCATATGTTGTTTTTGCCATATGATGTGTTAAGGGATACACGGGTATTTTTAACCACCCATTCCTATTTGAAATTGATTTACATTAATGTTCATTCTGAATTATATAATGAAATTGAACAAATTATTTTCATTGTAATATTTACAGCAGTGATCAGGCAACAGTTAAGCAGGGTGGGCGAACAACAGTGAGCTTGTTAAGTGGTAAGTCTAAGCTATAGCTAATCATGGGgttttccttttacagcattgatgatgtaatgtaatgaactgtgtttatatataatactgtatataaatactaACATGTGTTTGCTTAATttttcagattaataaagaaaatgttcacagtattttcccACTGAAGAGGAGCGGTTTATTCGGGCAGATTTTGATAAAGAGAATGGGTGCCAAACAGCaggtatttttaataatgttatttgtgtattattattattattattattattattattattaggcaataTTACTAATTTCTACACTTTTTTGCATCAGACCTCACAATAAATCAAGGAGGAGATGAGAGATGTCGTCCTCTGTTGCTGGTCTATCTCTATGAATAAGAGGAGGAGCTCATCCATGAGTGCAATGTAAGTGTCTCAAACAGTTTTAGATATTAATGGTCTTCAGAAAActgcattttatatttttgcatgtttacaaaaaacaaaaatatagctcAAGCACTACATTGTTGAATGCACTATTCTTTGTATAAACatggtttgtttttataaatttatatttttgtacactagtatacattttaaaaagaccCTGTCCATTATAAGTCAAAATACTTGTGCACTTGTGTCAGTCAGCAAGGTCTATTCAAACATTTTGAAGAATTACTGTTCACAGAGATACAAAGAAATGGtttgtttccttaatatatttccttaatgtgtttttgtaaaccttaaacatttgaaatgtacaactgcataatttaataataataaacttaatgtttattttacagtgtgggaTTGCACAGAGAATTGCTGTCTGCTAGAGGAATGACCAACCATGAGGACTTCTGCCTTGTCTTGGAGGATGAGTGATTCATGACTCATGGCTAGCTTAAAAAATCTAGAATTGCTGAACTGGATTTATacaaatattccccaaattaaaatcacttacaaagaAACATATATTTCTGACACAATTCACTGCTACAACCTTTTGGGGAATTTTCActgcattgattgattgattgtgttgCTAATATTTGAGATGCAGCTTTTATACTGGTTTTATATGTTATGCAATACACACATTCTGTCAGATTTTGTCTAAAATGTGAATACTCCTACAAATGAAAGttgacagaacattttttttctatgGCATGGATAAAGGAATTTTATCAGAGATTAACATTGCTGTAAACTTTATATAGATTTGTTTAAcatattgtaccatttttttgAATCGGTGGAACGTGTAATAAAATGATATTTGgcaaaaa

Function

GO:

id name namespace
GO:0001707 mesoderm formation biological_process
GO:0007498 mesoderm development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0043034 costamere cellular_component
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004883 False 1180 lncRNA 0.35 5 10712178 10714221
TCONS_00006009 True 2050 lncRNA 0.31 1 10712178 10714227

Neighbor

gene id symbol gene type direction distance location
XLOC_002624 dbh coding downstream 105060 10564261 ~ 10607118 (-)
XLOC_002623 BX323065.1 coding downstream 379751 10319308 ~ 10332427 (-)
XLOC_002621 NA coding downstream 423495 10261345 ~ 10288683 (-)
XLOC_002622 NA coding downstream 433645 10273729 ~ 10278533 (-)
XLOC_002620 strbp coding downstream 693384 9834896 ~ 10018794 (-)
XLOC_002626 NA coding upstream 70107 10784334 ~ 10787649 (-)
XLOC_002627 nrarpa coding upstream 146532 10860759 ~ 10864331 (-)
XLOC_002628 exd3 coding upstream 165310 10879537 ~ 10969596 (-)
XLOC_002629 ak3 coding upstream 286667 11000894 ~ 11012000 (-)
XLOC_002630 ptbp3 coding upstream 432094 11146321 ~ 11261565 (-)
XLOC_002619 NA non-coding downstream 1050486 9646362 ~ 9661692 (-)
XLOC_002618 BX248511.1 non-coding downstream 1173843 9534615 ~ 9538335 (-)
XLOC_002638 NA non-coding upstream 1181146 11895373 ~ 11898575 (-)
XLOC_002642 NA non-coding upstream 2584612 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 non-coding upstream 2590838 13305065 ~ 13305183 (-)
XLOC_002646 BX293994.2 non-coding upstream 2892800 13607027 ~ 13607143 (-)

Expression


Co-expression Network