XLOC_026259 (slc5a11)


Basic Information

Item Value
gene id XLOC_026259
gene name slc5a11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18655673 ~ 18675688 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051211
CTTTGATCGAAGAAGGGTTTTCTAGAAACACTGGATTTGATCACAGGAGACCCTACAGTTCTGTTTAAATGGCCTATTCACTAGGATAAAGTCTTCTATGTTTTTCTGACACGTTGCTCAGAGACACGCGCCTGAGAAACTCCCTGGCCTCATGGCTGCCACTGAGGCTCCCGATGCGTCTCCTACTCCCACCAGTGATGGCACAGCACAACAGACCACCCTCGCCACCACAGATATAGTGGTGCTTGTCATCTACTTCCTCTTGGTACTGGCTGTGGGCTTGTGGTCCATGTGGAAGACCAAGAGGAGCACAGTGGATGGATATTTTCTAGCTGGCAAAAACATGACTTGGTGGCCAGTGGGTGCGTCTCTGTTTGCCAGTAATGTGGGCAGTGGTCACTTCATTGGTCTTGCTGGCTCTGGGGCAGCAGCTGGTATCGGTGCCGTCGCTTACGAATGGAATGGCATGCTGATGGTGCTTGTCATGGGTTGGCTGTTTTTACCCATCTATATTGCATCAAGGGTCACAACAATGCCTGAGTATTTAAAGAAACGTTTTGGGGGCAAAAGGATACAGttatttctttgtgttttatATCTATTTATCTACATCTTCACCAAAATATCAGTAGACATGTACGCAGGAGCTGTGTTCATCCAGCAGGCTCTGCAGTGGAATATTTACCTCGCTGTGGTTTTGCTTCTGGGCATTACTGCTCTGTACACTATCGCAGGTGGTCTGGCAGCAGTGATCTACACTGATGCGGTTCAGACCATCATCATGGTGATCGGAGCCCTGATCCTCATGGGCTTCAGTTTTGCAGAAGTTGGGGGATTTGAAGCTGTCCTGGACAAGTATCCTCAAGCTATTCCCTCCATCCGAGTGCCCAACACCACCTGTGGAATCCCTCGTGACGATGCTTTTCATATTTTCCGTCACcctgtgacctctgacctgccCTGGCCTGGAGTAATCCTAGGCATGTCCATACCATCCATGTGGTACTGGTGTTCTGACCAGGTGATAGTGCAGCGTTCACTAGCAGCTAAGAATATTCTGCATGCTAAAGGGGGATCTCTGCTGGCCGCTTACATCAAAGTTTTGCCCTTCTTCATGATGGTGATCCCAGGCATGATCAGCAGAATACTTTACCCAGACGAGGTGGGCTGTGGAGACCCGGAGGTGTGTAAAGAAGTTTGTGGGAATTCGGTGGGCTGCTCGGACATCGCTTATGCTAAGCTGGTCATGGAGCTCCTTCCTGCAGgtcTGAGGGGTTTAATGATGGCGGTGATGTTGGCTGCGCTCATGTCCTCTTTGACCTCTATATTCAACAGCTCCAGCACTATTTTCACCATGGACCTGTGGAGGAACATCCGTCACACTGCCTCTGAGTGGGAGCTCATGATTGTGGGAAGGGTGTTTGTACTGGTGTTAGTGGTGGTGTCGGTGCTGTGGATTCCTCTGGTTCAGGCCAGTCAGGGCGGGCAGCTCTTCATCTACATCCAGTCCATCAGTATGTACCTGCAGCCCCCCATAACGGTCATCTTTGTGGCTGGATGCTTCTGGAAACGGACCAATGAGAAGGGGGCATTTTGGGGTCTAATGGTGGGAATGGCAGTTGGTTGTACGCGGATGATACTGGATTTCATCTATCCCACACCGCAGTGCTACGAGAGCGACACCAGGCCTGACATCATCAAATACGTTCACTTCCTCTACTTCTCCATCATTCTTACTATCCTCACGCTTGTCGTGGTGGTGTGTGTCAGTCTGGCCACGGAAAAACCCAAACCAGAACAGATCAGTCGGTTGACATGGTACACGCGCTTTGATGCGGTAATAGAAAGTGAAGAGGTCGTGTCTTCAGAGCTCTATACCATCGACAACGACATAAAAGTCAGAGAAAATGAAGCACTTCCTGCCAAAGAAGATTCCAGCGGTTCGGTGTCCAGCAATGCAGGCTCGTCTAAACTGAAGTCTGCTCTCTTCTGGCTGTGTGGAATGGAGAAGCAGACAGAAAAGTCCTCTTCATCTCCTGCTCCTCCAGACGCTGCCATGTGTTCCCTGGAGGAAGAGCCCTGTATGAAACACGTGGTCAATGCAAACCTCATCATCTGTGTGTCAGTGGCCGTCTTTCTCATCGCCTACTGGGCATAGAGACACTCCTCCTTCATAATTTATTTGTACTGCAAAAGTCAGCTTTATGGAGTTTGATGATTACTAAATTCTGCGTAAactggtaaagtctagatcagtggttctcaaacgtttttcatcaagtaccacctcggaaaataattgtctctccaagtaccccCATAATGATGAGAAAGAATAAttcctaatattaaaaatatttattattgtcagccaccttaaacataataaatagtctgaacattaa

Function

symbol description
slc5a11 Predicted to enable glucose:sodium symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A11 (solute carrier family 5 member 11).

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005412 glucose molecular_function
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-041114-9 Predicted to enable glucose:sodium symporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Predicted to be integral component of membrane. Orthologous to human SLC5A11 (solute carrier family 5 member 11).

Ensembl:

ensembl_id ENSDARG00000019932

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051211 True 2405 mRNA 0.48 16 18655673 18675688

Neighbor

gene id symbol gene type direction distance location
XLOC_026258 aqp8b coding downstream 79805 18572279 ~ 18575868 (-)
XLOC_026257 NA coding downstream 190680 18461357 ~ 18464993 (-)
XLOC_026256 ndufb10 coding downstream 244705 18405136 ~ 18410968 (-)
XLOC_026255 kdelr2a coding downstream 271172 18376269 ~ 18384501 (-)
XLOC_026254 spag9a coding downstream 282069 18303407 ~ 18373604 (-)
XLOC_026260 grid2ipa coding upstream 28 18675716 ~ 18711288 (-)
XLOC_026261 e4f1 coding upstream 38455 18714143 ~ 18737126 (-)
XLOC_026262 zgc:113333 coding upstream 65262 18740950 ~ 18756076 (-)
XLOC_026263 hagh coding upstream 98823 18774511 ~ 18792534 (-)
XLOC_026264 msrb1a coding upstream 122743 18798431 ~ 18805294 (-)
XLOC_026252 NA non-coding downstream 363456 18109375 ~ 18292217 (-)
XLOC_026249 NA non-coding downstream 711438 17943289 ~ 17944235 (-)
XLOC_026246 NA non-coding downstream 1051524 17602486 ~ 17604149 (-)
XLOC_026245 BX470185.2 non-coding downstream 1752393 16900243 ~ 16903280 (-)
XLOC_026265 CU151886.3 non-coding upstream 296720 18972408 ~ 18974640 (-)
XLOC_026268 BX546473.1 non-coding upstream 531546 19207234 ~ 19216723 (-)
XLOC_026269 BX322663.2 non-coding upstream 657816 19333504 ~ 19333631 (-)
XLOC_026274 BX572620.1 non-coding upstream 1137560 19813248 ~ 19820807 (-)
XLOC_026276 NA non-coding upstream 1295993 19971681 ~ 19973620 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_04870434_04878415 SLC5A11 coding CI01000034 null 4870361 ~ 4878415 (-)
bowfin (Amia calva) AMCG00018464 NA coding CM030135.1 CM030135.1 11515955 ~ 11526795 (+)