XLOC_026262 (zgc:113333)


Basic Information

Item Value
gene id XLOC_026262
gene name zgc:113333
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 18740950 ~ 18756076 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051215
tttgtgttaggtgcaTTTAATGCTAAGGCCCAGGGTGAGGTCCAGCGCATGCTTGGCTGTGAAATTCAGCTCGAAAAAAATGACTGTAAGGGTGCATCCTTTCCTGGATCAGACATTTATGAAATGGTGAAGAAGATCCACACCAACCTTCAGAGTTCAATTATAAACCTCAAGCAAAACTATCACGTCAAAGGATCATTCAGCTTTTATCATCGCAAACGCAACTTTGCCAACCCTCGAAATCTTGGATTTTTCAAAGACGATCTGAAAaaaatgatggatgaatgggatTCCTTTTTGCTGACTTTTCGGGAAAGCATGGAGGCGATTTTTTACCCGGACACTTTAGAGGAGTGGTTGGAAGAGAACGTGAATGAACACATTGAAACGCTTCACAACATGGTGGTTGATGTAGAGCGGATCATTAAACTCAACGGACAGCCAAAGGTGGACCCCTTGGAAAATAGGTGAAACAAATCGGTGTAAAAGACATTCCAAACATGGCATTCAGACCTCTTGTTTCTGCACAAAAGGAGGTGTTTCCCCTCTCAGGGACCTTGCTTATTACCTTAGGACTTTACTGGAAGTGACgaacacatatattatatatgaacTGCTTGAAAAAATGAATTCACAACGTTGCATTGATGTGTTTATTTAATCGGTTTTTGAGTGGACTTTGCTAAAGATTTAGCTGTAAAGGGATGAAATGCAATCATgcataaattaatgttttttataacTGTGGTCTGAGGAGCACAAATATTGTGCAATTCTGTATAAATGCAAAATGTGTGATCACTTACTGTAGAAATGTTACAGTAGAGCTTTCCATAAAGATGCCAAGAATTGTTAGTACTTCAATACTATTAAAGAAGACttgtaattatataaatatttggttTAGATTTATAGGGATTTACAAAAGACTACAATAAAACTGCAAATCTGTT
>TCONS_00051216
GGGAAGTCATTCAGTGTCGACAATTTTTCTTTACAAGATAGATAGATTACGGAACATttcaatattatataaataataatatcattttgACCTAGACAGCGTATTTTTGGCTAATATATTTAGACACATATATTGACTGCTTTTGTCGTTCAGGGTCACATTTGTCATGACACGCTGAATTGCATTGTTTATATGCCCATATATTACACATGTTACAGCCGCGGAGTGTTTGCTTACCTGCCGTAAAGCGTCGATGTGACGCGCACACTTTTACTGTCATCGTTTGCGGGTTAACGTGTTTCTTGTAGACAAGTACAGAAACATGTTTACCACCATGTATTAATTGTGCAAAAGAGCAGTTGTAAAATCGACACGTTAAACTGGTTAAGCTTGTCGCGGTAACTCAAAAACACGTTCGCTTGATGGTCCATCAACACCGTACGGAAGTAAATGTATGTCTGTATGACTATATGCCTTTTAAACTCGTCTAGTAAAGGGACcgagaattttttttaacagaCATGAGCAGCCAAAAGCTTATTAGGTTAATCATCGGCTCCTTAGTGATTGTGGCCATGGTGAAACTGTTCTTCAACCCCAGAGGAAGTGTGAAGTCTAAAAGTGAAAAGACCCACCAGATCATACAAGGTGGTAATTTCTGGGCTAGCCAACGAATCCCACTGATAAAAGTGGTTGAAAATAAACAGGATACCGTGAAAACAGAACAACAGCCTAAAGTTGAGCAAGAGGAAAGTGAGAAGATTCAGAAAAAACAAGAGCAATTAAAGCCAGAAGTTCCTGAAAAAACAGATCCACTAAAGATTGTGCATTTAGATCTGAAAGGTGCCCCACCCAAAGTTAAATACCTTGAGCAGTTATTCCCTCTACTGTCATCTTTGGGTGCTAATGGGATATTGCTGGAATATGAGGACATGTTTCCCTATGAGGGAGACCTTGAAATTCTCAAATCAAGCTTTGCATACAGTCCGGAAGATATAGAGGAAATTAAGTCTCTGGCTAAACGACACAATCTGGAACTGATACCTTTGGTGCAGGTGTTTGGACACATGGAGTTCGTCTTAAAACatgaaaagtattttaaattgaGAGAAGTGGAAACGTTTCCCAATAGTCTAAACTCTCTGGCCCAAGGAAGCATGGAACTCGTTCAAAACATGCTAATGCAGGTTATGAAGAAGCACCCAGAAGCACGGTGGTTCCACATTGGTGCCGATGAGGTGCGTGGCTTGGGCGAAAGTGAAGATTCGAAGCGATGGTTAGAAGCCAACAACGGAGACATGGGCAAGCTCTACCTCAATCATGTGACTGCAGTTGCAAAGTTTATGACCAAACAGAAGCAAAGAATCAAGCTGATCTTGTGGGACGACATGTTCAGGAAATTTAGCCCTGACACTATAAAAGaaTCAGGTTTGCAAGATCTTGCTTCACCCATGATATGGAACTACCATGCAAACTTGAACGTGAAGGACATTGGTAAGTATATCTCCAAGTATGAGCAGGCTGGATTTCGTGGCGTGTGGTTTGCTAGTGCTTTCAAAGGAGCATCTGGGATCGACCAGATCTGGACTCCAATTGATCACCATTTAAAAAACCATATACAGTGGCAGGAAGTCATCGCATCCATGCCGCAGTACAAGTCAGTGAGATTTCAAGGCATTGCACTGACTGGCTGGCAAAGGTATGAGCATCACACAGTGCTGTGCGAGCTTCTCCCGGTGGCCATTCCTTCTCTCACTGTCTGTCTGCAGACACTGAAATATGgtgcaTTTAATGCTAAGGCCCAGGGTGAGGTCCAGCGCATGCTTGGCTGTGAAATTCAGCTCGAAAAAAATGACTGGTATGAAACAGTTTATATTTTCAATGACTTTATTGTTGTCAGCATCAATGGAAGTATCTACTGTAAATGTAATATGTAGGTTATAtatgtacaattgaagtcaaaatgattagaccTCCTCTAAAATTTG
>TCONS_00051217
GTCCATCAACACCGTACGGAAGTAAATGTATGTCTGTATGACTATATGCCTTTTAAACTCGTCTAGTAAAGGGACcgagaattttttttaacagaaaaacccataaaggtttggaacaaacTGAGGGCAAGTATTAATGACATGAGCAGCCAAAAGCTTATTAGGTTAATCATCGGCTCCTTAGTGATTGTGGCCATGGTGAAACTGTTCTTCAACCCCAGAGGAAGTGTGAAGTCTAAAAGTGAAAAGACCCACCAGATCATACAAGGTGGTAATTTCTGGGCTAGCCAACGAATCCCACTGATAAAAGTGGTTGAAAATAAACAGGATACCGTGAAAACAGAACAACAGCCTAAAGTTGAGCAAGAGGAAAGTGAGAAGATTCAGAAAAAACAAGAGCAATTAAAGCCAGAAGTTCCTGAAAAAACAGATCCACTAAAGATTGTGCATTTAGATCTGAAAGGTGCCCCACCCAAAGTTAAATACCTTGAGCAGTTATTCCCTCTACTGTCATCTTTGGGTGCTAATGGGATATTGCTGGAATATGAGGACATGTTTCCCTATGAGGGAGACCTTGAAATTCTCAAATCAAGCTTTGCATACAGTCCGGAAGATATAGAGGAAATTAAGTCTCTGGCTAAACGACACAATCTGGAACTGATACCTTTGGTGCAGGTGTTTGGACACATGGAGTTCGTCTTAAAACatgaaaagtattttaaattgaGAGAAGTGGAAACGTTTCCCAATAGTCTAAACTCTCTGGCCCAAGGAAGCATGGAACTCGTTCAAAACATGCTAATGCAGGTTATGAAGAAGCACCCAGAAGCACGGTGGTTCCACATTGGTGCCGATGAGGTGCGTGGCTTGGGCGAAAGTGAAGATTCGAAGCGATGGTTAGAAG

Function

symbol description
zgc:113333 Predicted to enable hexosaminidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human HEXD (hexosaminidase D).

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0015929 hexosaminidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-57 Predicted to enable hexosaminidase activity. Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human HEXD (hexosaminidase D).

Ensembl:

ensembl_id ENSDARG00000038242

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051215 False 953 mRNA 0.38 4 18740950 18744511
TCONS_00051216 False 1988 mRNA 0.41 11 18744296 18756076
TCONS_00051217 True 904 mRNA 0.41 8 18750526 18755651

Neighbor

gene id symbol gene type direction distance location
XLOC_026261 e4f1 coding downstream 3824 18714143 ~ 18737126 (-)
XLOC_026260 grid2ipa coding downstream 29662 18675716 ~ 18711288 (-)
XLOC_026259 slc5a11 coding downstream 65262 18655673 ~ 18675688 (-)
XLOC_026258 aqp8b coding downstream 165082 18572279 ~ 18575868 (-)
XLOC_026257 NA coding downstream 275957 18461357 ~ 18464993 (-)
XLOC_026263 hagh coding upstream 18435 18774511 ~ 18792534 (-)
XLOC_026264 msrb1a coding upstream 42355 18798431 ~ 18805294 (-)
XLOC_026265 CU151886.3 coding upstream 216332 18972408 ~ 18974640 (-)
XLOC_026266 grin2ca coding upstream 249111 19005187 ~ 19133003 (-)
XLOC_026267 rfx1a coding upstream 396146 19152222 ~ 19200651 (-)
XLOC_026252 NA non-coding downstream 448733 18109375 ~ 18292217 (-)
XLOC_026249 NA non-coding downstream 796715 17943289 ~ 17944235 (-)
XLOC_026246 NA non-coding downstream 1136801 17602486 ~ 17604149 (-)
XLOC_026245 BX470185.2 non-coding downstream 1837670 16900243 ~ 16903280 (-)
XLOC_026268 BX546473.1 non-coding upstream 451158 19207234 ~ 19216723 (-)
XLOC_026269 BX322663.2 non-coding upstream 577428 19333504 ~ 19333631 (-)
XLOC_026274 BX572620.1 non-coding upstream 1057172 19813248 ~ 19820807 (-)
XLOC_026276 NA non-coding upstream 1215605 19971681 ~ 19973620 (-)

Expression


Co-expression Network