Gene
RNA
| Item | Value |
|---|---|
| gene id | G716483 |
| gene name | tnk2 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048572.1 |
| NCBI id | CM023226.2 |
| chromosome length | 91622588 |
| location | 48784415 ~ 48784823 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tnk2 | Enables several functions, including epidermal growth factor receptor binding activity; protein kinase activity; and ubiquitin protein ligase binding activity. Involved in phosphorylation; positive regulation of peptidyl-tyrosine phosphorylation; and regulation of clathrin-dependent endocytosis. Located in several cellular components, including clathrin-coated pit; clathrin-coated vesicle; and cytoophidium. Part of Grb2-EGFR complex. |
| description |
|---|
| PREDICTED: activated CDC42 kinase 1 isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU814223 | True | 409 | lncRNA | 0.63 | 1 | 48784415 | 48784823 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dlg1l | LOC106568684 | coding | downstream | 167827 | 48356004 ~ 48616588 (-) |
| LOC118965521 | NA | coding | downstream | 247789 | 48531522 ~ 48536626 (-) |
| LOC110529989 | LOC106568683 | coding | downstream | 441405 | 48329684 ~ 48343010 (-) |
| LOC110529987 | LOC106568679 | coding | downstream | 890239 | 47726790 ~ 47894176 (-) |
| LOC110529117 | NA | coding | downstream | 1128347 | 47655052 ~ 47656068 (-) |
| LOC110529994 | LOC106568693 | coding | upstream | 337226 | 49122049 ~ 49140712 (-) |
| LOC118965653 | NA | coding | upstream | 611976 | 49396799 ~ 49396853 (-) |
| LOC110529999 | LOC106568697 | coding | upstream | 657885 | 49442708 ~ 49491248 (-) |
| LOC110530002 | LOC106568700 | coding | upstream | 739915 | 49524738 ~ 49529686 (-) |
| LOC118965614 | NA | coding | upstream | 792280 | 49577103 ~ 49578807 (-) |
| G716470 | NA | non-coding | downstream | 13586 | 48770614 ~ 48770829 (-) |
| G716466 | NA | non-coding | downstream | 20802 | 48763327 ~ 48763613 (-) |
| G716409 | NA | non-coding | downstream | 107862 | 48676142 ~ 48676553 (-) |
| G716408 | NA | non-coding | downstream | 109685 | 48674401 ~ 48674730 (-) |
| G716401 | NA | non-coding | downstream | 124846 | 48659347 ~ 48659569 (-) |
| G716484 | NA | non-coding | upstream | 98 | 48784921 ~ 48785219 (-) |
| G716496 | NA | non-coding | upstream | 18729 | 48803552 ~ 48806253 (-) |
| G716509 | NA | non-coding | upstream | 43153 | 48827976 ~ 48828526 (-) |
| G716512 | NA | non-coding | upstream | 48380 | 48833203 ~ 48833545 (-) |
| G716513 | NA | non-coding | upstream | 48872 | 48833695 ~ 48833915 (-) |
| G716480 | tnk2 | other | downstream | 1900 | 48782121 ~ 48782515 (-) |
| G716463 | LOC106591423 | other | downstream | 23252 | 48759912 ~ 48761163 (-) |
| G715865 | NA | other | downstream | 494834 | 48288942 ~ 48289581 (-) |
| G714425 | LOC106568665 | other | downstream | 1605679 | 47178424 ~ 47178736 (-) |
| G716488 | NA | other | upstream | 3698 | 48788521 ~ 48788962 (-) |
| G718489 | NA | other | upstream | 1000851 | 49785674 ~ 49837696 (-) |
| LOC110530011 | LOC106568709 | other | upstream | 1081807 | 49866272 ~ 49937001 (-) |
| G719151 | NA | other | upstream | 2152105 | 50936928 ~ 50939471 (-) |
| LOC110530043 | LOC106568739 | other | upstream | 2467532 | 51252355 ~ 51259061 (-) |
