G716970


Basic Information

Item Value
gene id G716970
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49513521 ~ 49514520 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU814725
aagcatcacatctggagtaaACATgacaccatctctacggtgaggcatggtggtgacagcatcatgctgtggggttgtttttcagcgacagggactgggagactagtcaggattgagagaaagatgaatggagcaaagtacagagagatccttgatgagaacctgctccagagcactcaggacctcaggctggggtgattgttcaccttccaacaggacaacgaccctaagcacacagccagtaCAACGACAAAgcagtagtggcttcgggacaagtctctgatagTATTTGTGGCACAGCCAGAgctcagacttgaacccaatctcaGGGAAGCACAAATacatgctcgtcatcctcaccagggtcttgacctgactgcagtttggtgtcataaCTGACTTCATTGGGCAAattctcaccttcgatggccactggcacactggagaagtgtgctcttcatggatgaatcccggtttcaaccaTAACGGGCAGACGTGTGGGCTAGCGGTTTTCTGATGTCACCATGATGCCCTATGGTGGGGTTATggcataaactacagacaatgaacacacttgcattttatcaatgggaATTTGAAGGCACAGAGATACCgttacgagatcctgaggcccattgtcgtgccatctgctgccatcacctcatgtttcagcatgataatgcatggcccaatgtcgcaaggatctgtacacaattcctggaagctgaaaatgtcccagttcttccatgacctgcatactcaccagacatgtcacccattaagcaagtgtgggatgctctggatcgacatgtacaacaacgtgttccagttcccgccaatatccagcatctTCGCACAGcaattgaagagtgggacaacattccacaatcaacagcttgatcaactctatgcgaggcaaatggtcacaccagatactgactggttttcttgtCCAGACCCAtacataacttttttttttaaaggtatctgtgaccaacag

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU814725 True 1000 lncRNA 0.48 1 49513521 49514520

Neighbor

gene id symbol gene type direction distance location
LOC110529997 LOC106568696 coding upstream 93238 49387165 ~ 49420283 (+)
gpr158b LOC106568695 coding upstream 132135 49278849 ~ 49381386 (+)
LOC110530924 LOC106568797 coding upstream 304367 49206999 ~ 49209154 (+)
LOC110529995 LOC106568692 coding upstream 315342 49147967 ~ 49198179 (+)
adipoqb LOC100653481 coding upstream 393212 49117727 ~ 49120309 (+)
LOC110530003 LOC106568702 coding downstream 76710 49591230 ~ 49600103 (+)
nyap2b LOC106568706 coding downstream 206142 49720662 ~ 49748389 (+)
LOC110530010 LOC106568707 coding downstream 260995 49775515 ~ 49846428 (+)
LOC118965615 NA coding downstream 338507 49853027 ~ 49854435 (+)
LOC110529118 LOC106598598 coding downstream 490461 50004981 ~ 50007814 (+)
G716958 NA non-coding upstream 15013 49490288 ~ 49498508 (+)
G716934 NA non-coding upstream 56680 49454016 ~ 49456841 (+)
G716891 NA non-coding upstream 141004 49372315 ~ 49372517 (+)
G716887 NA non-coding upstream 143455 49369749 ~ 49370066 (+)
G716981 NA non-coding downstream 5018 49519538 ~ 49519990 (+)
G716982 NA non-coding downstream 6045 49520565 ~ 49520918 (+)
G716984 NA non-coding downstream 7796 49522316 ~ 49522525 (+)
G716986 NA non-coding downstream 18172 49532692 ~ 49532964 (+)
G716994 NA non-coding downstream 32681 49547201 ~ 49547444 (+)
G716862 NA other upstream 179749 49332841 ~ 49333772 (+)
G716133 NA other upstream 752781 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 969357 48537743 ~ 48544164 (+)
G713574 NA other upstream 2744275 46715915 ~ 46769246 (+)
G713405 NA other upstream 3047294 46465398 ~ 46466227 (+)
G716993 LOC100136012 other downstream 31692 49546212 ~ 49547085 (+)
LOC110530019 LOC106568718 other downstream 871026 50384296 ~ 50397007 (+)
LOC110530024 LOC106568723 other downstream 1122176 50607401 ~ 50641183 (+)
G721689 LOC106583873 other downstream 3862712 53377232 ~ 53377705 (+)

Expression


Co-expression Network