G717539


Basic Information

Item Value
gene id G717539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49543211 ~ 49544233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU815319
GCACCTTTCGGCAGTCTCCCTCCGAGGACAGTGAACTTCTCTGGGCTCCGGAGGAACTCCACCACCTCCTGCAGCTCGTTCTTGGCCTCCTCTACCCCCTTGACGTGCTCAAATGTCACGTTCTTCATCTGGACAGGGTCCACCGAGTCCAGGCCTGATGTGGTTCGGAATCGCACTGTCCAGAATGGTTAGATTAAGGTTCGAAATCACACTGCTCGGATGCAAACACATTCTTAGCTAtggttagttttttttttttcaacaaatCACTGTTTTTTAAGAAGCATTCAGTAAACATCACATCAAGTTCTCGATTACTCATCATCCGAATTGACACACCAAAAGAATGCTCAGCAAATTTGAATGCATCAGCAAAAAGTTAAGGCTCAATCTGGGAGGTTGTTCAATTGCCATTTAAATACATTATATAGGCTGCCCATTTATTTATGAAGAATGGAACTTTAAACAGACAATATACTGCTTCATAAACCATCATGTCACTCTCATGGACTGCATATGAAGTTGACAGTGGTTACacttctccaggcccatccctctgCAGTGAGGAGTGCAGTTGGGCTGAAACGCAAACTCCAGATTGTGGCTTTAAAGTAAAATTCCACCCCAAaacttttggtatttgtttcattcgtccattgttgacataggcccaaaatgttttgcttgtctgCAATCAagtttcaagatatgtaactttaaaaataaatcatccctgtatgatgcattttgcatcatttgatgcattttgcatcatatggGGTTATTTCTGTATACCAatagtttttgggtggagttttcctttaaaaaGTACACACCAAGCTGCATGCCAGAGTACACACCAAGCTGCATGCCAGAGTGAAGGTCTTTGAGCTTGATAAAATGAAAAAGGAGCCTTTACCCGATAGGAAGGGGGTCTTGGAGAGGCCGTAGAGTCCCACCAGCAGCAGGACCAGCAGTATAAACCTCGTCCTCCtcagaga

Function

NR:

description
ATP-dependent zinc metalloprotease YME1L1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU815319 True 1001 lncRNA 0.43 2 49543211 49544233

Neighbor

gene id symbol gene type direction distance location
LOC110530002 LOC106568700 coding downstream 13525 49524738 ~ 49529686 (-)
LOC110529999 LOC106568697 coding downstream 51963 49442708 ~ 49491248 (-)
LOC118965653 NA coding downstream 146358 49396799 ~ 49396853 (-)
LOC110529994 LOC106568693 coding downstream 402499 49122049 ~ 49140712 (-)
LOC118965521 NA coding downstream 1006585 48531522 ~ 48536626 (-)
LOC118965614 NA coding upstream 32870 49577103 ~ 49578807 (-)
LOC110530004 LOC106568703 coding upstream 57306 49601539 ~ 49612229 (-)
LOC110530005 NA coding upstream 85344 49629577 ~ 49630769 (-)
LOC110530006 LOC106568704 coding upstream 91242 49635475 ~ 49647848 (-)
zgc:110269 LOC106568705 coding upstream 103700 49647933 ~ 49655158 (-)
G717534 NA non-coding downstream 10676 49531987 ~ 49532535 (-)
G717532 NA non-coding downstream 21278 49521606 ~ 49521933 (-)
G717531 NA non-coding downstream 22713 49520154 ~ 49520498 (-)
G717528 NA non-coding downstream 26228 49516700 ~ 49516983 (-)
G717527 NA non-coding downstream 28689 49513075 ~ 49514522 (-)
G717540 NA non-coding upstream 565 49544798 ~ 49545015 (-)
G717542 NA non-coding upstream 2399 49546632 ~ 49546884 (-)
G717543 NA non-coding upstream 3440 49547673 ~ 49547973 (-)
G717544 NA non-coding upstream 3983 49548216 ~ 49549071 (-)
G717546 NA non-coding upstream 6589 49550822 ~ 49551046 (-)
G716488 NA other downstream 754249 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 760696 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 782048 48759912 ~ 48761163 (-)
dlg1l LOC106568684 other downstream 926688 48356004 ~ 48616588 (-)
G715865 NA other downstream 1253630 48288942 ~ 48289581 (-)
G718489 NA other upstream 241441 49785674 ~ 49837696 (-)
LOC110530011 LOC106568709 other upstream 322397 49866272 ~ 49937001 (-)
G719151 NA other upstream 1392695 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1708122 51252355 ~ 51259061 (-)
G721275 NA other upstream 3216806 52761039 ~ 52761451 (-)

Expression


Co-expression Network