XLOC_002627 (nrarpa)


Basic Information

Item Value
gene id XLOC_002627
gene name nrarpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10860759 ~ 10864331 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004884
CTTGCGAAGGATTGAACTTTCTTGCTAGGTCTTTTGGATACAAGACTGCATTTTACACACCAAGTGTGTCGTTTACTTGTCCTTTTTGGGATATACTCTCGTCTTATTCAAGTCTCACGCGCCTAAACTGGTTTTAGTCCAGTTAAGCTGCGAGTTTCTCCCAGTGTGAAGCATCATGAGCCAGGCGGATATATCGACGTGCTCGGCGCCGCAGAGAGTCTTCCAGGAGGCGGTAAAAAAAGGCAACACCAAGGAGCTCCACTCACTGCTGCAGAACATGACCAACTGCGAGTTTAACGTCAACTCCTTCGGCCCCGAGGGACAGACGGCGCTGCACCAGTCGGTCATCGACGGGAACCTGGAGCTCGTGAAACTGCTGGTTAAATTTGGAGCCGATATTCGGCTCGCCAACCGGGAGGGCTGGAGCGCGTTGCACATCGCCGCTTTCGGGGGACACCAAGACATCGTGTTATACCTCATCACCAAGGCCAAGTACTCGTCCGGCGCGCGGTGATCCGGTGCAACACGCGGAAAAGACCGGGCTCGTTTCGTTCTAGCATTGATCTGACAGACCGCGGAGAAGTTCCCTTAAAACCAAATGAGGGCTGTAGCCTTTTTCTTTCCCGTGAGTATGTATATCAATCTGTCTGTGGTCAGATCTGGCGACGAGAGAGAGACTGAAACGCACGCTGCGTTGGTACTATAGctttttattgaatgtttaagTCAGCAGATCTGGACTGTGTGTGGCTTTACCAGGCCGTGACCTGTTGACCTGTCCACCTGGAGAAATCGAGATGGCACTTGATGCTGTGGCtgaatgctggaatagttgaaaGAGGTGAACTCCAGAATGAAGGCCATCATCCTCTGTTTTGGCTAAACACTGTCTTTTAATACGAACCGTGCAAGTCGTTTCATCAATCAAATCATGTGGCATTGGTGACCAGTGCTCAAATATTTCCTCGAAATAACAATTGACTTATTCTTAAGTACTGTACACATAGCTTTACCGTGTCTCTCTGTATAAGTAGTCTATTGCGCTCTGCCTTCACCTAGCAGACCCGCAGCTTCCACACAGCTTTCAGGCCAGTGCGACCCATATGGTTAACGTGTTACTAAAAAAATCGCTGCTTTcgcttttcttttatttctttaatttttgtttgtatcAAAACGTCAGGAAAGTCGCCTTTGGGACACACTTTGTAATCTTCTTTCAGTATTTTGAATTAACACCCTGGTCATCACTGTGAATACAGGCTGggtttgtctttttatttatgaAGGTACATTGAGATGATGCATTTAAATTATGTTGTGGTTATTTTTTAAGACTATAGCCTAAGTGTAAAAGTATGTAGGGTGACATAAAGCTGCTTCGGACTCGTTACAGGCTAAACTGTCCCGCGTGGAGACTCCACGCCTCGGCCCCCCACGTGTACacctagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattttttttttttttttctcccctggGAAAACGCGTgccctttttaacttttattctgGTTCTCTGCATCAGCTACCTCGACTTGAAAGTATTCAACAAAATCATATGCTCTCTGTCTCAAGCCTTCTCTTTAACTCTTCTCAGTTACCCACTAgtgctgtttttaatgtttatttttttggtcaaCAGTATCATTAGGCCCTATTTGGGTTATTTTACTTGATGTCATCCCCACATCTTCACTCGGGACAAATATATCTCCATGAACCAAAATAAGATCCATTGGTCATTCCGACTTTTCGTTCACCAAGCATGGTTGAGACGTTGTATGTggttttatttgcttaattttgcaTACAGCTTTTTTTGTTTCAACTGCAGTGACAAAAAGTGAAATGCATTGCATGACTATTAAATGCAGGGAGTTTTGTTGCACATAAACGTGGAGCCTTTTACGCCCCCTAGTGCCTGGTCGGGTAACTGCAGGAGCTGAGGCTTACCAATAGTTACTACTGAGCAGGACTATACAAGTGAACATTTAAAAAGACTATTCCGTTGCAGGAAACATCGACAGATTCGCTTAAAAAGAGACTGCCTGCCGCTTTTAAGAGTCATGGCACCTGATGTTTGTTTCAATGCTGCTTTTATGTAAGTTTTTCCTTGATACAATGGCCAACAGTGAGAGAGTGGACGAGGACATCTAATATATCAGTTAGATTTTTCTGCGAGAAGCCCCATGCAgttgtgtgagcgtgtgtgatTGTACTCATCCTGTCTTGCACAAACCAACGCTACAATATTTTAAGTGGCGTTGCTGATGTTTCCAGCCCCTGACGCTCAACCTGGTTTGCCGGCCAGGAGCTCCTGGAGAAAGCAACCGATGTGAAACCATTCTCAAGATCATCTGTTCGATTGGTATAGGCAGAACAAATATGCATCGCTTGTCTTAAACTTGATATTTTTACTCTTGTTGAAAATATTGCACTGATGATGACTGTTGTTAATTCGTTGACTTCAggtcaacattttatttttttctaaatagaaAAAAGGAACACAACAAAAAtactattgtataaaaaaaagctCCAGGTTATATTGTCTCTTCTTGTTGTATAACATTACGTTTGCAAAGATGTTTATCTCTGTGATCGGGtgtatgtgtatacatatatagtatatatatggatatatagaCGCTGATATCTCAGAGCACTTTCTTATTTGAAGTGCTCTCCTCCTGATGTTAATAAAGGGGAATAATACATGTGATGGTAAGATCATTGTAACAAAAGAAATTGCACGATGTATAGTTGTTTCACCCCAAACTTTGTCATAACATTTATGACATGGGGTTAAATGACTGGATAGGTGTATATGAATGAGTAAAAgtgctgtttttttctttctttgtctttttgTGGACCAAGTTATTTTGTGTCTCCAGCAAACAAAAGTTTTATGAGTGATGCGAGTGTTCGTTGTGTTGATTTCAGCTTTTTGTTTGTGCGTCcgtttttgtttgtaatttttgaaCATTTGTAACACTGTGATTCGTGTGTGGTGAGgatatgagtgctgtaatgtgtgtttttttgttgttgttgttgtatgcgTGTATGTGTTCAAGCCAGTAAAGAAATAATTAAACCTTC
>TCONS_00004885
GGGCAGAGAATCACCGGGACCGCGCGACGGACAAATAGCAGCGGGCAAGCGGACAGTTTTTATCTGGAGTCATTTCTACCCGTCCAAACGTCAAAAGTTACCCTTGCCAAATAAACCTCAGCGGGACTCGAGAGACGCGTTTTCTGAGGTAAATTCACCTCAGACGTCTGTAAACCTCTAACGGCCCCTCAATGCGCTTAACCGGAGATACCGACGTTCACACGCCACCTTTCTCACGTTAAATCACTCAATTCTGCCATAAACCTGGTGCTGCTACTGagagacattcacacacacttacacgcGGAGACCTACACCTTGCGAAGGATTGAACTTTCTTGCTAGGTCTTTTGGATACAAGACTGCATTTTACACACCAAGTGTGTCGTTTACTTGTCCTTTTTGGGATATACTCTCGTCTTATTCAAGTCTCACGCGCCTAAACTGGTTTTAGTCCAGTTAAGCTGCGAGTTTCTCCCAGTGTGAAGCATCATGAGCCAGGCGGATATATCGACGTGCTCGGCGCCGCAGAGAGTCTTCCAGGAGGCGGTAAAAAAAGGCAACACCAAGGAGCTCCACTCACTGCTGCAGAACATGACCAACTGCGAGTTTAACGTCAACTCCTTCGGCCCCGAGGGACAGACGGCGCTGCACCAGTCGGTCATCGACGGGAACCTGGAGCTCGTGAAACTGCTGGTTAAATTTGGAGCCGATATTCGGCTCGCCAACCGGGAGGGCTGGAGCGCGTTGCACATCGCCGCTTTCGGGGGACACCAAGACATCGTGTTATACCTCATCACCAAGGCCAAGTACTCGTCCGGCGCGCGGTGATCCGGTGCAACACGCGGAAAAGACCGGGCTCGTTTCGTTCTAGCATTGATCTGACAGACCGCGGAGAAGTTCCCTTAAAACCAAATGAGGGCTGTAGCCTTTTTCTTTCCCGTGAGTATGTATATCAATCTGTCTGTGGTCAGATCTGGCGACGAGAGAGAGACTGAAACGCACGCTGCGTTGGTACTATAGctttttattgaatgtttaagTCAGCAGATCTGGACTGTGTGTGGCTTTACCAGGCCGTGACCTGTTGACCTGTCCACCTGGAGAAATCGAGATGGCACTTGATGCTGTGGCtgaatgctggaatagttgaaaGAGGTGAACTCCAGAATGAAGGCCATCATCCTCTGTTTTGGCTAAACACTGTCTTTTAATACGAACCGTGCAAGTCGTTTCATCAATCAAATCATGTGGCATTGGTGACCAGTGCTCAAATATTTCCTCGAAATAACAATTGACTTATTCTTAAGTACTGTACACATAGCTTTACCGTGTCTCTCTGTATAAGTAGTCTATTGCGCTCTGCCTTCACCTAGCAGACCCGCAGCTTCCACACAGCTTTCAGGCCAGTGCGACCCATATGGTTAACGTGTTACTAAAAAAATCGCTGCTTTcgcttttcttttatttctttaatttttgtttgtatcAAAACGTCAGGAAAGTCGCCTTTGGGACACACTTTGTAATCTTCTTTCAGTATTTTGAATTAACACCCTGGTCATCACTGTGAATACAGGCTGggtttgtctttttatttatgaAGGTACATTGAGATGATGCATTTAAATTATGTTGTGGTTATTTTTTAAGACTATAGCCTAAGTGTAAAAGTATGTAGGGTGACATAAAGCTGCTTCGGACTCGTTACAGGCTAAACTGTCCCGCGTGGAGACTCCACGCCTCGGCCCCCCACGTGTACacctagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattttttttttttttttctcccctggGAAAACGCGTgccctttttaacttttattctgGTTCTCTGCATCAGCTACCTCGACTTGAAAGTATTCAACAAAATCATATGCTCTCTGTCTCAAGCCTTCTCTTTAACTCTTCTCAGTTACCCACTAgtgctgtttttaatgtttatttttttggtcaaCAGTATCATTAGGCCCTATTTGGGTTATTTTACTTGATGTCATCCCCACATCTTCACTCGGGACAAATATATCTCCATGAACCAAAATAAGATCCATTGGTCATTCCGACTTTTCGTTCACCAAGCATGGTTGAGACGTTGTATGTggttttatttgcttaattttgcaTACAGCTTTTTTTGTTTCAACTGCAGTGACAAAAAGTGAAATGCATTGCATGACTATTAAATGCAGGGAGTTTTGTTGCACATAAACGTGGAGCCTTTTACGCCCCCTAGTGCCTGGTCGGGTAACTGCAGGAGCTGAGGCTTACCAATAGTTACTACTGAGCAGGACTATACAAGTGAACATTTAAAAAGACTATTCCGTTGCAGGAAACATCGACAGATTCGCTTAAAAAGAGACTGCCTGCCGCTTTTAAGAGTCATGGCACCTGATGTTTGTTTCAATGCTGCTTTTATGTAAGTTTTTCCTTGATACAATGGCCAACAGTGAGAGAGTGGACGAGGACATCTAATATATCAGTTAGATTTTTCTGCGAGAAGCCCCATGCAgttgtgtgagcgtgtgtgatTGTACTCATCCTGTCTTGCACAAACCAACGCTACAATATTTTAAGTGGCGTTGCTGATGTTTCCAGCCCCTGACGCTCAACCTGGTTTGCCGGCCAGGAGCTCCTGGAGAAAGCAACCGATGTGAAACCATTCTCAAGATCATCTGTTCGATTGGTATAGGCAGAACAAATATGCATCGCTTGTCTTAAACTTGATATTTTTACTCTTGTTGAAAATATTGCACTGATGATGACTGTTGTTAATTCGTTGACTTCAggtcaacattttatttttttctaaatagaaAAAAGGAACACAACAAAAAtactattgtataaaaaaaagctCCAGGTTATATTGTCTCTTCTTGTTGTATAACATTACGTTTGCAAAGATGTTTATCTCTGTGATCGGGtgtatgtgtatacatatatagtatatatatggatatatagaCGCTGATATCTCAGAGCACTTTCTTATTTGAAGTGCTCTCCTCCTGATGTTAATAAAGGGGAATAATACATGTGATGGTAAGATCATTGTAACAAAAGAAATTGCACGATGTATAGTTGTTTCACCCCAAACTTTGTCATAACATTTATGACATGGGGTTAAATGACTGGATAGGTGTATATGAATGAGTAAAAgtgctgtttttttctttctttgtctttttgTGGACCAAGTTATTTTGTGTCTCCAGCAAACAAAAGTTTTATGAGTGATGCGAGTGTTCGTTGTGTTGATTTCAGCTTTTTGTTTGTGCGTCcgtttttgtttgtaatttttgaaCATTTGTAACACTGTGATTCGTGTGTGGTGAGgatatgagtgctgtaatgtgtgtttttttgttgttgttgttgtatgcgTGTATGTGTTCAAGCCAGTAAAGAAATAATTAAACCTTC

Function

symbol description
nrarpa Involved in branching involved in blood vessel morphogenesis and regulation of cell-cell adhesion. Acts upstream of or within blood vessel endothelial cell proliferation involved in sprouting angiogenesis; neural crest cell migration; and pigment cell differentiation. Is expressed in several structures, including germ ring; pronephros; segmental plate; somite border; and trunk vasculature. Orthologous to human NRARP (NOTCH regulated ankyrin repeat protein).

GO:

id name namespace
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0001755 neural crest cell migration biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0002043 blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0050931 pigment cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030515-6 Involved in branching involved in blood vessel morphogenesis and regulation of cell-cell adhesion. Acts upstream of or within blood vessel endothelial cell proliferation involved in sprouting angiogenesis; neural crest cell migration; and pigment cell differentiation. Is expressed in several structures, including germ ring; pronephros; segmental plate; somite border; and trunk vasculature. Orthologous to human NRARP (NOTCH regulated ankyrin repeat protein).

Ensembl:

ensembl_id ENSDARG00000091419

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004884 False 3178 mRNA 0.41 1 10860759 10863936
TCONS_00004885 True 3495 mRNA 0.42 2 10860759 10864331

Neighbor

gene id symbol gene type direction distance location
XLOC_002626 NA coding downstream 73110 10784334 ~ 10787649 (-)
XLOC_002625 NA coding downstream 146532 10712178 ~ 10714227 (-)
XLOC_002624 dbh coding downstream 253641 10564261 ~ 10607118 (-)
XLOC_002623 BX323065.1 coding downstream 528332 10319308 ~ 10332427 (-)
XLOC_002621 NA coding downstream 572076 10261345 ~ 10288683 (-)
XLOC_002628 exd3 coding upstream 15206 10879537 ~ 10969596 (-)
XLOC_002629 ak3 coding upstream 136563 11000894 ~ 11012000 (-)
XLOC_002630 ptbp3 coding upstream 281990 11146321 ~ 11261565 (-)
XLOC_002631 inip coding upstream 455640 11319971 ~ 11323134 (-)
XLOC_002632 lin54 coding upstream 460184 11324515 ~ 11353469 (-)
XLOC_002622 NA non-coding downstream 582226 10273729 ~ 10278533 (-)
XLOC_002638 NA non-coding upstream 1031042 11895373 ~ 11898575 (-)
XLOC_002642 NA non-coding upstream 2434508 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 non-coding upstream 2440734 13305065 ~ 13305183 (-)
XLOC_002646 BX293994.2 non-coding upstream 2742696 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 non-coding upstream 2747802 13612133 ~ 13612248 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G420524 NA unknown CI01000304 null 5173223 ~ 5173339 (+)
rainbow trout (Oncorhynchus mykiss) LOC110536980 LOC106568448 misc NC_048576.1 CM023230.2 12108368 ~ 12112859 (+)
bowfin (Amia calva) AMCG00020191 nrarpa,nrarp coding CM030127.1 CM030127.1 12734875 ~ 12735213 (+)