G717678


Basic Information

Item Value
gene id G717678
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 49859717 ~ 49863082 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU815479
CCTATAAGGCCATAGAGATCTTGTATTTCTGTGAAGCATAATATTAAAGGCACAATTCACTTAACAATGTTTGTCAGTTACTTTTAGACAGCTTTCTCAAGAGGGGTCAAATGTCGAGATGGGTCCCACgattgtcacgttcgtcgtaacgaggagaccaaggcgcagcgtgattggaATACATTCTCCTTTTATTAAAACAAAGAACACTTTAACAAACAAAATGACCGTGACGCTATAAACAactagtgctgacatgcaactacacatagacagtaacccacaaaaccaaaatggaaaatggcaacctaaatagaaaccccaatcagagacaacgataaacagctgtctctgattgggaaccaattcaggccaccatagacctacatatacctagacataccaaaaccccatagatgtacaaaaaaccctagacaagaccaaaacacacataccaccctcgtcacaccctgacctaaccaaaataataaagaaaacaaagataactaaggtcagggcgtgacaacgatATTATTTTGCACCCCATAAtttctctctactttgcacattcttccactgcaaatcaaccattccaatgttttacttgctatattgtatttacttcgccaccatggcctttttttgcctttacttcccttatctcacctcacttgctcacattgtgtatatagacttatttttctactgtattattgactgtatgtttgttttactccatgtgttgttgtatgtgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtgaaataaaaaaaattatgctCTATGCCTCAATCCCAAATAAACTTGAGcctttatatttttatttaactaggaaagtcagttaagaacaaattcttattttcaaggacggcctaggaacactgggttaactgccttgttcaggggcagaacgacagatttgtaccttgtcaacctTTCGGctgctagtccaacactctaacgactaggctaccctgcttagaggtcgaccgattatgatttttcaacaccgataccgattattggaggaccaaaaaagctgattaatatttgtatttatttatttgtaataatgacaatttcaacaatactgaatgaacactttaattttaacttaatataatacatcaataaaatcaatttagctcgaataaataatgaaacctgttaaatttggtttaaataaggcaaaaacaaagtgttggagaagaaagtaaaagtgcaataagtGCAATATGTTCCCAGGTAagatgttttaggttgtagttattataggactatttctctctataccatttgtatttcatatacctttgactattggatgttcttatagaaaCAAAGAACACTTTAACATGTTacattgccagtgtaacagtaaagcttccgtccctctcctcgcccctacccggGCTCGAGCCAgggacacatcgacaacagccaccctcgaagcatcgttacccatcgctccacaaaagccgcggctcttgcagagcaagaggaacaactacttcaaggtctcagggcgagtgacgtcactgattgaaacgcagtctcctcgtggagtgcaatgtaatcgctcacaatcggtgtccaaaaatgcggattaccgattgttatgaaaacttgaaatcggccctaattaatcggccattccgattaatcggtcgacctctaaaatCAACTGTCCCCAAACTAGGCGTCGCCATCCAATATGGGGAAACgaggcctggtattcatagctgactttgaaaaggtttttgataaagtatgactggaatttatatataaatgcctggaatatttcaattttggagaatctcttatacgatggggttaaagttatgtattgTTAACCCTAgctgtaaaatagtaaataatggctacctctcagaaagtattaaactgtcaagaggagtgaaacaaggttgtccactatcatcatatctatttattatggccattgaaatgttagctattaaaatcagatccagcAATAATATCAAGGGCCTAGAAATCCAGGGCTTACTAATAAAAGGTGACATTGTACGCTGATAATTcattcttttaaatccacaatttggatccctccacagcctcatagcggatctaaaaaaaatgtttaacctctctggattacaaccaaattatgataagtgaTATTATGATATTACGTATTGGATAACTAAAAAaacacaacttttacattactgtgtagtttactAATAAAATGGTCTGACTGTGAAGTGGACATGAAACAATTCATATcccgaaagaaagaaatgatctcactacAATATATTTTTGGAAAGTTAGCAAacatagataagatcttgctaccatggaaaggaaaatctatttgtggaaaaatcaccctgattaactctttagtcatatcccagtttacctatttcCGTATGGCCTCGCCTACAGCTAGCTACCAGTTTTTAAACATTATATGAGcaaaatgtattccattttatTTTGAACGGCAacccagacaaaattaaacgggcctatttatatgaaataatgaaataataaaatgaaatcatctccaaactgtcgctatttttaaaacaagccatagaaagttggttgcaatttcagtttaaccACCAGAAAAGTCAGAATGTTTAAAACGTTTAAAAACGGTATAATCTCTGTAAATTATATCATGAAtatggagttatgtcacacatgcagctacaGTAACAAATATATATGGAAATGTCGGCTCTcctcaaaattacaaccaactaattgaatcattaccgcaaaaatggaagaggcaagtggaagggggaaaaagtaaagAACTTGTCtgttggccctgcattaaagaacaaaattggttaaagaacattgtgataaataaaaaagtataccagtttcatttgaggaccaaaaaattgacagctgtgccataaaaattgcaaaatagttgggaagacttttgatgtaccgattccatggcacatggtttatgaactgatacacaaaccGATGCTGGATTCAAGAGTTTTCCCAtttacagtattatacaaaattcttgcaacatTATATATATGgtggatacaaccatcccagctctgcagattttgctacAAAGAGACAGAATCATCAGATCATTTGTTTTGTTACAGTTTCATATggagcttgtttttggtcgcagattcaggaatggctgaagaattacaacatttacctggagctaactatgcaaatagcacttacaaagtcatagtcaatcaataAATTATATAATAAATGTTCTCTCTTTAATTtg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU815479 True 3366 lncRNA 0.36 1 49859717 49863082

Neighbor

gene id symbol gene type direction distance location
LOC118965615 NA coding upstream 5282 49853027 ~ 49854435 (+)
LOC110530010 LOC106568707 coding upstream 13289 49775515 ~ 49846428 (+)
nyap2b LOC106568706 coding upstream 111328 49720662 ~ 49748389 (+)
LOC110530003 LOC106568702 coding upstream 259614 49591230 ~ 49600103 (+)
LOC110530001 LOC106568699 coding upstream 294933 49506784 ~ 49566389 (+)
LOC110529118 LOC106598598 coding downstream 141899 50004981 ~ 50007814 (+)
LOC110530925 LOC106568799 coding downstream 152096 50015178 ~ 50038484 (+)
LOC110530014 LOC107558802 coding downstream 180260 50043342 ~ 50071991 (+)
LOC110530017 LOC106568715 coding downstream 283282 50146364 ~ 50336325 (+)
LOC110530020 LOC106568719 coding downstream 516689 50379771 ~ 50383088 (+)
G717728 NA non-coding upstream 1362 49858114 ~ 49858355 (+)
G717726 NA non-coding upstream 3226 49856286 ~ 49856491 (+)
G717724 NA non-coding upstream 4089 49855377 ~ 49855628 (+)
G717721 NA non-coding upstream 8681 49850806 ~ 49851036 (+)
G717719 NA non-coding upstream 9779 49849639 ~ 49849938 (+)
G717732 NA non-coding downstream 3408 49866490 ~ 49869558 (+)
G717763 NA non-coding downstream 53982 49917064 ~ 49917291 (+)
G717764 NA non-coding downstream 54293 49917375 ~ 49917631 (+)
G717765 NA non-coding downstream 55225 49918307 ~ 49918523 (+)
G717767 NA non-coding downstream 57152 49920234 ~ 49920449 (+)
G716993 LOC100136012 other upstream 312632 49546212 ~ 49547085 (+)
G716862 NA other upstream 525945 49332841 ~ 49333772 (+)
G716133 NA other upstream 1098977 48760343 ~ 48760740 (+)
G716035 LOC106581475 other upstream 1315553 48537743 ~ 48544164 (+)
LOC110530019 LOC106568718 other downstream 522464 50384296 ~ 50397007 (+)
LOC110530024 LOC106568723 other downstream 773614 50607401 ~ 50641183 (+)
G721689 LOC106583873 other downstream 3514150 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 3807314 53670348 ~ 53674103 (+)
rps28 NA other downstream 4063135 53926018 ~ 53927959 (+)

Expression


Co-expression Network