XLOC_026274 (BX572620.1)


Basic Information

Item Value
gene id XLOC_026274
gene name BX572620.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 19813248 ~ 19820807 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051238
GTTGGAGTCACTTTTGCAAGTTGGAGGAAAGACGACACTagggctgaagtatttcttttagacagGTGCACGTATTCGTGGTTTCAGGAGGTGTGGTTTGGACAGCAAGCatgggactgtgtttcaaagatattatgctaaccgAGGGGGTGGAGTTAGTGCGGCTGTACCGAGCACTCTCAAAGGCACCTGTGGAGCCGAAGCTCCGCCTACGATACAGGTACACCCCGCCCACTACCAGAGCCATCAGAACAAGCACCGCCACCAGGACCTGAATCAACACGTGCAGATGGTCTACTTCAGCTGCAAGACagagaggaaaagaaaagaaatagtcaaattaaaaatgacaagcaaCTTA
>TCONS_00052994
GTACCCATTTGTAACAATATTTCGACTTGATGTCTTTGGCAAATTCTTCACAGCACTAAACGCGCTCTTAAATAAGCTATTTGAGCAAACATCCAGCAGGGAGCAGTAACGTAATTCCCCATTCCCTCGCCAGCACTTCCAGTAACTCCCGCTCACCTAAAGCCTCCTTCTCCAACTGTCTCTCTGTCTTCTCTTTCCATCCAAACCTTCTcctttctatctctctctctctctctctctctctctctctctctctctcctgtgtTCTGATTGGTTCCAGATCTTCTCCTCTCGCTGACTCGACATTCCTCAGCAGGCCACAGCACCGATTCACCTCCAGGCCTCGCCAAGAGCCAAAGGGGGGTGGGGGTAGGGGGACAGGCAAAAGCTGAAAACTGACAGgaatgagagagaaagaagaGATACAAGAAGCTAGTTTAAGTTTCAGTCAATGTACTATTTGGATTCAGCTTTGGGATGAGCTCATCATCACAGCGCTGAGATCAAGCAAACGGTTTACGAGGGGGTGGAGTTAGTGCGGCTGTACCGAGCACTCTCAAAGGCACCTGTGGAGCCGAAGCTCCGCCTACGATACAGGTACACCCCGCCCACTACCAGAGCCATCAGAACAAGCACCGCCACCAGGACCTGAATCAACACGTGCAGATGGTCTACTTCAGCTGCAAGACagagaggaaaagaaaagaaatagtcaaattaaaaatgac
>TCONS_00052456
CTCGACTTTTTGTCatttacattttcagaattattaCTTACTGAAGCAAACACCATTAAACAGCGTTTTACTAGAAGTCACATAGCAAACAtattctttattcattttttaaaagcaaatccataaaacaaaatattcaaaacaaacaaaaaaatgaacattttcattgtCTTCACAGGGACtgaatatgaatttttttttccttctatcATTCAGTCAAAAAGTTCCCATAATCTGATCTGCTGTGGGCTTAATTCATTCTGAACCACTCACACAAACTCTTTCACAAACGTTGAGAATGATCATGTGCAATGTGTGTCTCATCATCACTATCATGCGTGTGTGGTCACATATTCTAATGATTGTATGGTCAAATGTGAGAAACAACTGTCTCATGTTGCAAATTcatgcaatagtatctggatgaaGACTTAGATTTGCAAACTGTAACGGCATATCTcaaagatgcaatgtcagacacaatgcactcaatggagggTTAGGGGTAAGCATTAGAAGCATTGCATTAAGCTCAGAGTCTGCATCCAGATCCTGCCTACTACATGTGGCAACAAGCTTCACTTGCTCCCTATAACCTTATGGTCATATCAGTCCTAATTATGACATTAAAGGCcacttttatataaaattattgctGAATACTAAGCCAAAAAAAGAGATATTTTAACAGTGAGTAAGAAAATTTACCTAATAGTCCATAAGTGCTGAAATGGTGCTACCTTACTAAAAAACGAACAAAATAGCAAGTAATACTGTACATGGAAGCACTGGTTACGAATTATTAGTAGTGATCGCTACTGTTTTTCCCCTCCTCTTAGGGTTATATATCCAAATACACCTTTAAGAGGGCTATATGTAATGTATTCATCTTTTTTTAGTTCTTGATTTGTAGACAGCTTTCATTAAACTAAAaaaacactactactactataaggCTACTAGATTTCTagcctgatctcaagagaaaACTTAACTATTTTAGAATTTGTCAGTGTAGTGGCTGATTCATTCCTATGATTGTAAAGTTCAGTCTAACGAAAAGgttcgattttaaaaaggaggcgtggcacttaaCCCCGCCtctgaacccaaccatcattgggggatgagcaaacaGTACAAAATTGCTTTTTGATTAGAAACTACGGCtgtataaaatattgaaattattgAAATATCGCAGTTGTGCAATatatcaacgcaatctcacggcaattcaatCTCAATGGCAGACATTCAAAGACGCTTTTGCATTTAATCGCTCATTTATCACAAAAAAAACTGTGATATATAAATATTCAACCTGATCTCACGAATAAAAGTATTTTgtgtttgtcagtttagtggctaattcgtatgatttaatttgtacaatttagtaggattttctcatcacccaatgacagttagggttaggggtggggttggatgcCACACCTCCTTTGACATTTTCGTAAGACTGAACTCgcacgaattcgtacaaattagccactaaactgacaaacgtAAAATACTTTTCTTCGTGAGATCAGGTTGAATATTTATATATCACAGTTTTTTGTGATAAATGAGCGATTGAATGCAAAAGCGTCTTTGAATGTCTGCCATTAGCACACACTTTGAAGTACATCTCAGCACTTCAGTTAATTTAGTGGATATGTCAATATACACATCTCTGAAACCAAGCAGAGTGCACATGCGGCCATGCTTGTCCAAAAACCTGTACCGATTTTAGTATTAATACTGAAATGTGACCAAGCAGGCAGGCCacgttaaagagacagttcacccaaaaatttaacttgtcataatttacttgctccaaacctgtttgtctctttcttctattgaaaacaaaagaagatattttgaagacagctgaaaaactgtaaccattgacttccatagtatttgtttttgctactatggatatcaacggttacaggttttcagctttcttcaaaataacccCAACAGTAGAAagtaaaggtttataaccacttgagggtgagtaaatagtgagcacattttcattttggagcacattttcattttggggcgAACTATCATTTTAagaaaatattaacttgactGTGATAGTTatcgattttttttgtttgtttgatacaaccaaacaaaactaaatgaagtTGATATAATTTTACAATTTGGAGCAATATTGATACGatactgtacagtatgtattttatttacattgttaagataccttttttgttttatgctaGAGTAAAATATGGCTGTTTACATTCAGAAATTGTAGTGACGCTTGGCTATATCATTTGAAACTGATATgtattgagatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataattaagcaTACTATCGCAAGTTTCTTtaatatcgcacagccctaatagaACTCAGTATAGTATAAATGCTGACAATGGCATCGAGTATAACGTTTACTAGATGCCTAAGTATAAAGTTCTGCTGTTCTGTAGTTCCCTTAAACAGCCACCAGTGTCACTAATAACAAAGATgaattaattttacataaagccCCATTAAAGCCAACCCGATAATGATAAGATCTCATCTGCTGAGCTTATCTGAGtaagcaaccacatagcaatgtgttaaaaaaaaagctttaccaACCACATAAAATTGTCGAGATCAGCAAGAATCACTTATTTCCTTAAAGAGatcgttcactcaaaaatgaaatttctatcatcatttactcaccctgtaCTTGTTCCAAAACCGTGTGAAtgcctttcttctgttaaacgctGGAAAAaatttaaccattgactttcttaCCTAGATATGTACACTAGATATCTATACaaaccctgagcatgcgtcaataccgccgccatatttgtacagtgctcccaggacaaaagtcaatcaaccgcactagtcaagacgaAAGCCAGTCTGAAGATGCTAAACTTTTGTGCTGTgtatgggtgtagtaacgagaaaacaaagcataaaggcagaacattttataggtaaaatttcgtttttttttttttttaggtttttttatatatgtttgtgctaaacaagtaatgCTATTGATGCTAATAATCACTTAATGCattgaccataaggcaaagtagcaccaaatTCGCACTAAATACTAAGTAACTCAAGGGTGCGTGATAACATAACAGTTCCTGTGCCTTAATGTGCATACTTGccaccctaaattattgaatattagaTAGATCAGAAAGGTGGGTGTTCACATTGAGACGCAATATATCAATTAGgtttgggcgatgtcgaccaatttggcattgtacaatgtctaatgtgaaccattgcaatggacgatggcatcatcctCATAGGCAGCggtgaatgaattatttttgaataattcataacaaattaattaagttacaCACAGATTACcaactgtcaatcacttttttatgggactctggcatgaataggcagtgatctgtacCGTTATAATGGCAtccacaaacttggttggtaaaaaaggtgcacaaccaacaggaaccaatcaacagtatctgaggttttcgctaaaactactaagtacaagcgtgaaagtgaaagattgaagcagtgtactgacgctgtgacatgctacctgatagattcaaaagaccaaagagtcgttagatagaggcaagattaattaaatatcaagttTACAACTGTAGtaagacgcgatccagcggtacattctTGATAAACTGTTCGACGTGCACTGCTCactgctaccctgtactaaaatggcggctctattgacacattccttctaatagacaacaatagcataggcgacatctaatgtaaatatctgtgGACTTTCATAATATTTGTAGGATGGAAATCAGTGGTCACGTTTTCACTTTTCTTAAAAACCTTATTTTTTTCaatccaacagaagaaagacactcattAGGCTTTAAACCACTAGAGGTAGAGTAAATAGGGAGTCCGTttttacttttgggtgaactatctctttaagcaagtctacatatatataaaaagatgCATTGTTAATCACGTTCATTGtcctgaaataaacaaacaaacaaacaaactgcatATTGTTCTGTAAGcaataaaagtaaatgtaatgAAAAGCGAATGCAACTGCAACACTATGTACCCATTTGTAACAATATTTCGACTTGATGTCTTTGGCAAATTCTTCACAGCACTAAACGCGCTCTTAAATAAGCTATTTGAGCAAACATCCAGCAGGGAGCAGTAACGTAATTCCCCATTCCCTCGCCAGCACTTCCAGTAACTCCCGCTCACCTAAAGCCTCCTTCTCCAACTGTCTCTCTGTCTTCTCTTTCCATCCAAACCTTCTcctttctatctctctctctctctctctctctctctctctctctctctcctgtgtTCTGATTGGTTCCAGATCTTCTCCTCTCGCTGACTCGACATTCCTCAGCAGGCCACAGCACCGATTCACCTCCAGGCCTCGCCAAGAGCCAAAGGGGGGTGGGGGTAGGGGGACAGGCAAAAGCTGAAAACTGACAGgaatgagagagaaagaagaGATACAAGAAGCTAGTTTAAGTTTCAGTCAATGTACTATTTGGATTCAGCTTTGGGATGAGCTCATCATCACAGCGCTGAGATCAAGCAAACGGTTTACGGTGAGGTCAGACGTCCTGTTGGGCAGCGTGtgattaaagagagagagagagagacactggCTCGTTCTCATGCACTTTCATCTATTTTAGTCCACAGCTCTGTTTTCTTCCACATCACTGAACTTCAAACACACGTAATTTGATctgtaattattatgattatcattTTCCGATGAATTCATGATGGACCTGAAATTTTGACCCACAAAACGTCACATTCAGCTgcacgaataaaaaaaaaagcataaaaaaatacacaacaaaGAACTTTAAAAAGTCACAGTCTAAAGAAATACTGCCTTGGTGGTACCTTGTGATTGTGCGCCCTCATAGATTGGAGGTTCAAGTCaattccctactgaaaaaaacagcttaaagtaGCCTAAgatgattggctggttttagctggtcgaccagcctggttttagaggggtttgggccaTTTTCAGGCAAGTTTTCAGCCATTTTtagtctggtcttagctggtcagaaccaaaaccagcttgaccagcctgatttaagctggaaatagctggttttagctaggcTCGCAGTCTGGctaggatggtcaagctggttttagccggtcatctcccagcctgaccagctgggACCAGGCTGGAATTGGCTGGAAACCAGAAtggaatggccaaaacccctctaaaaccaggctggttgaccagccaagcagcctaggctggtttaagcgttttttttgttttttgttttttctcagcAGAGTTGGTTCGTCTGAAATCTGTACCTTCTAAGTAGGTGCTACAATTAACTTAATGACTGGAAAAAAATGTAGTTTCATATAGTATGCTTCAGGAGGTACtaaatctgccattttgtcattacCAAATTTGCAAATTCTCTCCAGTAGCCTCatgagattctgaagtgtttaaaggtgcagtaggtgattgttttcagaaacaatttttgttgtgctggttgaaagtctcttcacatttcaatagtaatgattaaagtaaattatctatatgtatttatatattctgGGTAAGGACTAAAACTCAAAAAATGTTCGTCTAATTAAATAATGTCGGGCCATGAATTCCCATAATTCCAACAAGCAGCCCAAACTGTCAACAaagtagatttgtacatctgtgcaTCCTTTTTCACGCAGATTTGCCGTTGGCGTGTGCATGCGCACCACACGTTAATTTGCACACGAAACACAGCAGTAAAATCAAATTCTGAATCAAAACTTCTTCAAATCCTGAATCTAGGTTGGAGTCACTTTTGCAAGTTGGAGGAAAGACGACACTagggctgaagtatttcttttagacagGAGGTGTGGTTTGGACAGCAAGCatgggactgtgtttcaaagatattatgctaaccgAGGGGGTGGAGTTAGTGCGGCTGTACCGAGCACTCTCAAAGGCACCTGTGGAGCCGAAGCTCCGCCTACGATACAGGTACACCCCGCCCACTACCAGAGCCATCAGAACAAGCACCGCCACCAGGACCTGAATCAACACGTGCAGATGGTCTACTTCAGCTGCAAGACagagaggaaaagaaaagaaatagtcaaattaaaaatgac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099809

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051238 False 361 lncRNA 0.49 3 19813248 19814819
TCONS_00052994 False 728 lncRNA 0.49 2 19813258 19816599
TCONS_00052456 True 6317 lncRNA 0.37 3 19813258 19820807

Neighbor

gene id symbol gene type direction distance location
XLOC_026273 zgc:163079 coding downstream 252190 19557604 ~ 19561058 (-)
XLOC_026272 CU571315.2 coding downstream 295786 19507415 ~ 19517462 (-)
XLOC_026271 CU571315.3 coding downstream 317434 19487707 ~ 19495814 (-)
XLOC_026270 s1pr5a coding downstream 444813 19364948 ~ 19368435 (-)
XLOC_026269 BX322663.2 coding downstream 479617 19333504 ~ 19333631 (-)
XLOC_026275 rnd2 coding upstream 30130 19850937 ~ 19899914 (-)
XLOC_026276 NA coding upstream 150874 19971681 ~ 19973620 (-)
XLOC_026277 CR855865.1 coding upstream 165534 19986341 ~ 19992463 (-)
XLOC_026278 atxn7l3 coding upstream 204902 20025709 ~ 20040636 (-)
XLOC_026279 ubtf coding upstream 221100 20041907 ~ 20063782 (-)
XLOC_026268 BX546473.1 non-coding downstream 596525 19207234 ~ 19216723 (-)
XLOC_026265 CU151886.3 non-coding downstream 838608 18972408 ~ 18974640 (-)
XLOC_026257 NA non-coding downstream 1348255 18461357 ~ 18464993 (-)
XLOC_026252 NA non-coding downstream 1521031 18109375 ~ 18292217 (-)
XLOC_026283 NA non-coding upstream 309467 20130274 ~ 20401724 (-)
XLOC_026285 NA non-coding upstream 1080259 20901066 ~ 20915710 (-)
XLOC_026295 CR387996.1 non-coding upstream 1380621 21201428 ~ 21206946 (-)

Expression


Co-expression Network