G718648 (LOC106568713)


Basic Information

Item Value
gene id G718648
gene name LOC106568713
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50068513 ~ 50071983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU816538
GTTCTATATTTATTGCAATGATAAGATACAGATATACAATTAAATTATATTCCAATATTGCAAGAGACAGTCTCTCTGATATTGATCCAAATATGGACAACTACATGACTAAAGACATTTTGACCAGATAGAACATGTATTTTGATGAGGGGAAAAGCAGCATAGTTTAATACTACAATATACAACAGACTGTGCACGAAGAACACTCAAAAGAACAATTAGAGATTTTCATGAAAAAGCCCAAATTCATAATACAGCTACTGGCACCTCGCTTTCCAGAAGACATCAGGAAACAGAAAAGCAATTAAAACAAACATACTtagaaaaagacaaaaaaaagctaCACGATGTGCAGTTGTTAGTAGTATACGTGTCCTGTAGAAGAGCTACACGCTGTTGAGAAGAGTTCAGGGAAACACGTTGATGAAGAAACCAGCTGGAGGCCTAAAAATCGGAGGTTAACATGCTCTTCGAAGAGGAAAGCAAGACTGAGTACTTGTACCCCTTTTCACACTAGTGAGCCTGAACAGAGATGCACCGCCTGTCTGATTACACATCCAGCATAGTTCCAGGAACAAGCCGGCACTACAAAATAGTGTGATATGAGCGTCTCGAAGATACTCCTCAGTCGACTACATTGGGTCGATCTGTGTAGGGTGCGTGGTATCAAAGCCCTCAAGTGACTCTCCCCCCCCCTTGCTCTCACACGTTCTGCTCTACCATTCCACTGTGGGGAGAACATTCCACCCAGAACATTTTGTGTGGAAGAGCAATATAAATGTTATGCAAGCCACTGCCAATGAGTTTCTCAACCACTAGTTAATCATTCACTATTCTTACGTGACTTAAAGTAAGTAGCCAAATGGACAAACTAGCTACATTACTCTTCACACATTCAAAGAAATGACAGTGTAAAATCGATcaatataaaataaaacaaaatctgATCCACACATAACATAATCCACATTTCTAGTGTTTGAAGGTACCCAATAATGAGTACAGTACACTCTTGACAATATACCTATTGGAGGTCAAAATTATAGCAAAAAAAgtttaataaaaatacaaataaattatgAAAATAAGTCTTGATACCAAAAACCTAAACAAAAATGTTTCTGTTCAGGTTGAACAAAGTAGGTTCATAATTTCTCAGactaagtttgtgtgtgtgtatatatatatttatataaacatatatatatatatatatatatatatatatacacacacacacttgatatATCAATAGATATCATTATATAAATGATACATTTATCTATTTTATCCTCACTATGAGTAAAAAATGTGACCTTACGAATGGACAGTCTTGGACCACAGCCCACATATCGCAACAATTGAGGAGAATTAGACCACGACCCCATTTGGTTTCAAATGGAGTCTCCATGCATTCACAGGGGTCTTCATCGTCGTCTGTTAGCTTGACTAGAATACCAATGAAGGCAACACAACAAACGCAATCATGAAAGGATGGGCATCCGAGTTGAACTGACAACAAGCCTACCATCTTCATTATACGATAGTTTGTTATAATAGTATTAAGTACACTGTCTGCTTTGCATGGCTTAAATAGAACTGAAGGGAGAATGGGATCGAAGTCTACAAACCAATGCCCTGGCTCCTATACTGCTCTGTATTCAAAAGGTTTGGAATTTGACactagttaaaaaaaaatgaataattgTACCAAAATCCCTTGCTGACACTTTTGACATGTCTTCTCGTATGAAAACAGCATGCATTGCAACAACAATTTACGTGTTTGGCACTATTTCATTTTGacgcctcattctaaaatggtgCATACAAACCTCAAACCCTTTTTCCATTCTATCTTTGCTGCCTGCACATGTGTGGCCTCAAATAAAGTCATTCTAGTAAGGAATATTTTAGATGATCAGTTTTACACTTAAAATTAGTGCCACTGCTCATGGACACTACTCTTATGTAATGGACATGACTCTTGCGAAACTCAGATTttatgtgtgtgcagaactgcaCGATGATCATGATCAACCATACAAACAAGCATTTCTCATTGAAAACAGAAagcactgcaaaaaaaaaaaaaaaaacaaggctgGGGGAGAAACTACAGATTCTGGTCCCTCCAGATTAGTTATATTGGCGCAGCCAGCGGTTGGTCAATTGTAACTTGATGGCTGCCTACGAGAGATCAGATTCTGGCTTTAGTCCAAATACAAGAGCTGAACCGTGTAGAGGGCCAGCTGCCACTGCTAGTACAGGACACTTGGCCCAGTTGTGTGACAATGGTCCAAAGGAAAGGTTTGGTTTGAGTAGGGAAAACGTGCCTACTGGACACAACACTGAGCTTAACTTTACTTTGATTGTACCAATCACACATCTTTCATAAGACCACAGTCAGGATTTGAGGGACAGGTAGAGAAGATGGCAGTATTTATCCTGGCAAAACAAGGATTCCATTGTTCTAGAATTCCCTCATCTGTGGAGATTGACTAAAAACGTACACATAACATGTAGAGCAGATGAGTCTTTCTGAACTAGGATGATATGGGATAAAGTCATAACGTAAGTACCAAAAAATTGGGAAAACATCGGGAGAACAATCGAGACAACTTCCTCAGACAAGCACATCTGTTAAGTTAGTTTGCATTTCTCAGTTGAAATAATTTCAGAACCACAATAAggcgttttttttcttctcttctcttttccatTGTCATAGCCGTTTGCTTCGTTTCACCGGTGTCAATACCAAGACAGACGTGGTACAGTATAGTTAGTGGAAGATCGGAGCAGACAAGATGGGGAGGTGTCTCCTCAGCGAGGTTGAGAGAGGACCTGGAGGAGATCCttcagaggaggagaaggaggtggtggtagtgataaTGTTTATGTTTGAACAGACAAGGGCTTTGCCTCACcgtctcccttctcctccactcctctttccCCCGCTCCTTCCGTGTGCTGCTCCAGCTCTTCACGGGTGATCATCTCAAAGTCGTTTCCGTTGCTGTGCTGCGAGCCCTCGTCCTCCCGGCGGTCGCTGTCCGTGTCTGAGTGGCGCTCGGCGGCGCTCGTCAACGTCCCAGCCGCCTCAGTCACCTCGTTTTCTTCCGTCCCTTTCGGCGCTGTGCCCTCACCCTCTTCTAtttccacctctccttcctcctcttcctccccaccaTCACCCTTCTCCTCGCTGTCCGACTTCTGGGCCTTGGCTGCGTCTGCATCGGTGGATTTGCCTTCCGTCTTGTCCGGGCTCTTCTTGCTGTAGCCCCGTGGGCCCTTGTAATCGTGCGTGTAGAGCGGGCGGAAGGAGTCGATGAAGCCCACGTCGGCAGTCAGGTTGGGCAGGAACCAGAAGTGGTGGCGACCGCCCGTCACCAGCCAGATGATCAGGAACAGGATGCAGCGAG
>TU816539
GTTCTATATTTATTGCAATGATAAGATACAGATATACAATTAAATTATATTCCAATATTGCAAGAGACAGTCTCTCTGATATTGATCCAAATATGGACAACTACATGACTAAAGACATTTTGACCAGATAGAACATGTATTTTGATGAGGGGAAAAGCAGCATAGTTTAATACTACAATATACAACAGACTGTGCACGAAGAACACTCAAAAGAACAATTAGAGATTTTCATGAAAAAGCCCAAATTCATAATACAGCTACTGGCACCTCGCTTTCCAGAAGACATCAGGAAACAGAAAAGCAATTAAAACAAACATACTtagaaaaagacaaaaaaaagctaCACGATGTGCAGTTGTTAGTAGTATACGTGTCCTGTAGAAGAGCTACACGCTGTTGAGAAGAGTTCAGGGAAACACGTTGATGAAGAAACCAGCTGGAGGCCTAAAAATCGGAGGTTAACATGCTCTTCGAAGAGGAAAGCAAGACTGAGTACTTGTACCCCTTTTCACACTAGTGAGCCTGAACAGAGATGCACCGCCTGTCTGATTACACATCCAGCATAGTTCCAGGAACAAGCCGGCACTACAAAATAGTGTGATATGAGCGTCTCGAAGATACTCCTCAGTCGACTACATTGGGTCGATCTGTGTAGGGTGCGTGGTATCAAAGCCCTCAAGTGACTCTCCCCCCCCCTTGCTCTCACACGTTCTGCTCTACCATTCCACTGTGGGGAGAACATTCCACCCAGAACATTTTGTGTGGAAGAGCAATATAAATGTTATGCAAGCCACTGCCAATGAGTTTCTCAACCACTAGTTAATCATTCACTATTCTTACGTGACTTAAAGTAAGTAGCCAAATGGACAAACTAGCTACATTACTCTTCACACATTCAAAGAAATGACAGTGTAAAATCGATcaatataaaataaaacaaaatctgATCCACACATAACATAATCCACATTTCTAGTGTTTGAAGGTACCCAATAATGAGTACAGTACACTCTTGACAATATACCTATTGGAGGTCAAAATTATAGCAAAAAAAgtttaataaaaatacaaataaattatgAAAATAAGTCTTGATACCAAAAACCTAAACAAAAATGTTTCTGTTCAGGTTGAACAAAGTAGGTTCATAATTTCTCAGactaagtttgtgtgtgtgtatatatatatttatataaacatatatatacacacacacttgatatATCAATAGATATCATTATATAAATGATACATTTATCTATTTTATCCTCACTATGAGTAAAAAATGTGACCTTACGAATGGACAGTCTTGGACCACAGCCCACATATCGCAACAATTGAGGAGAATTAGACCACGACCCCATTTGGTTTCAAATGGAGTCTCCATGCATTCACAGGGGTCTTCATCGTCGTCTGTTAGCTTGACTAGAATACCAATGAAGGCAACACAACAAACGCAATCATGAAAGGATGGGCATCCGAGTTGAACTGACAACAAGCCTACCATCTTCATTATACGATAGTTTGTTATAATAGTATTAAGTACACTGTCTGCTTTGCATGGCTTAAATAGAACTGAAGGGAGAATGGGATCGAAGTCTACAAACCAATGCCCTGGCTCCTATACTGCTCTGTATTCAAAAGGTTTGGAATTTGACactagttaaaaaaaaatgaataattgTACCAAAATCCCTTGCTGACACTTTTGACATGTCTTCTCGTATGAAAACAGCATGCATTGCAACAACAATTTACGTGTTTGGCACTATTTCATTTTGacgcctcattctaaaatggtgCATACAAACCTCAAACCCTTTTTCCATTCTATCTTTGCTGCCTGCACATGTGTGGCCTCAAATAAAGTCATTCTAGTAAGGAATATTTTAGATGATCAGTTTTACACTTAAAATTAGTGCCACTGCTCATGGACACTACTCTTATGTAATGGACATGACTCTTGCGAAACTCAGATTttatgtgtgtgcagaactgcaCGATGATCATGATCAACCATACAAACAAGCATTTCTCATTGAAAACAGAAagcactgcaaaaaaaaaaaaaaaaacaaggctgGGGGAGAAACTACAGATTCTGGTCCCTCCAGATTAGTTATATTGGCGCAGCCAGCGGTTGGTCAATTGTAACTTGATGGCTGCCTACGAGAGATCAGATTCTGGCTTTAGTCCAAATACAAGAGCTGAACCGTGTAGAGGGCCAGCTGCCACTGCTAGTACAGGACACTTGGCCCAGTTGTGTGACAATGGTCCAAAGGAAAGGTTTGGTTTGAGTAGGGAAAACGTGCCTACTGGACACAACACTGAGCTTAACTTTACTTTGATTGTACCAATCACACATCTTTCATAAGACCACAGTCAGGATTTGAGGGACAGGTAGAGAAGATGGCAGTATTTATCCTGGCAAAACAAGGATTCCATTGTTCTAGAATTCCCTCATCTGTGGAGATTGACTAAAAACGTACACATAACATGTAGAGCAGATGAGTCTTTCTGAACTAGGATGATATGGGATAAAGTCATAACGTAAGTACCAAAAAATTGGGAAAACATCGGGAGAACAATCGAGACAACTTCCTCAGACAAGCACATCTGTTAAGTTAGTTTGCATTTCTCAGTTGAAATAATTTCAGAACCACAATAAggcgttttttttcttctcttctcttttccatTGTCATAGCCGTTTGCTTCGTTTCACCGGTGTCAATACCAAGACAGACGTGGTACAGTATAGTTAGTGGAAGATCGGAGCAGACAAGATGGGGAGGTGTCTCCTCAGCGAGGTTGAGAGAGGACCTGGAGGAGATCCttcagaggaggagaaggaggtggtggtagtgataaTGTTTATGTTTGAACAGACAAGGGCTTTGCCTCACcgtctcccttctcctccactcctctttccCCCGCTCCTTCCGTGTGCTGCTCCAGCTCTTCACGGGTGATCATCTCAAAGTCGTTTCCGTTGCTGTGCTGCGAGCCCTCGTCCTCCCGGCGGTCGCTGTCCGTGTCTGAGTGGCGCTCGGCGGCGCTCGTCAACGTCCCAGCCGCCTCAGTCACCTCGTTTTCTTCCGTCCCTTTCGGCGCTGTGCCCTCACCCTCTTCTAtttccacctctccttcctcctcttcctccccaccaTCACCCTTCTCCTCGCTGTCCGACTTCTGGGCCTTGGCTGCGTCTGCATCGGTGGATTTGCCTTCCGTCTTGTCCGGGCTCTTCTTGCTGTAGCCCCGTGGGCCCTTGTAATCGTGCGTGTAGAGCGGGCGGAAGGAGTCGATGAAGCCCACGTCGGCAGTCAGGTTGGGCAGGAACCAGAAGTGGTGGCGACCGCCCGTCACCAGCCAGATGATCAGGAACAGGATGCAGCGAG

Function

NR:

description
translocation protein SEC62-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU816538 False 3431 lncRNA 0.42 2 50068513 50071983
TU816539 True 3407 lncRNA 0.42 3 50068513 50071983

Neighbor

gene id symbol gene type direction distance location
LOC118965625 NA coding downstream 82308 49983389 ~ 49986205 (-)
LOC110530012 LOC106568711 coding downstream 98431 49964914 ~ 49970082 (-)
LOC110530011 LOC106568709 coding downstream 131512 49866272 ~ 49937001 (-)
LOC118965522 NA coding downstream 182287 49881643 ~ 49886226 (-)
zgc:110269 LOC106568705 coding downstream 413355 49647933 ~ 49655158 (-)
LOC110530015 LOC106568800 coding upstream 21514 50093497 ~ 50095929 (-)
LOC110530016 LOC106568717 coding upstream 265748 50337731 ~ 50366270 (-)
LOC110530021 LOC106568720 coding upstream 340997 50412980 ~ 50434788 (-)
LOC110530027 LOC106568725 coding upstream 593648 50665631 ~ 50674317 (-)
LOC110530028 LOC106568726 coding upstream 606189 50678172 ~ 50685258 (-)
G718663 LOC106568713 non-coding downstream 8938 50051445 ~ 50059575 (-)
G718625 NA non-coding downstream 67320 49994926 ~ 50001193 (-)
G718598 NA non-coding downstream 120390 49947768 ~ 49948123 (-)
G718594 NA non-coding downstream 124285 49943716 ~ 49944228 (-)
G718590 NA non-coding downstream 133477 49934833 ~ 49935036 (-)
G718780 NA non-coding upstream 169018 50241001 ~ 50241249 (-)
G718781 NA non-coding upstream 169681 50241664 ~ 50241894 (-)
G718783 NA non-coding upstream 177875 50249858 ~ 50250116 (-)
G718784 NA non-coding upstream 178768 50250751 ~ 50251056 (-)
G718798 LOC106598425 non-coding upstream 225417 50297400 ~ 50383091 (-)
G718489 NA other downstream 230817 49785674 ~ 49837696 (-)
G716488 NA other downstream 1279551 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 1285998 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 1307350 48759912 ~ 48761163 (-)
G719151 NA other upstream 864945 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 1180372 51252355 ~ 51259061 (-)
G721275 NA other upstream 2689056 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 3391199 53462034 ~ 53478913 (-)
G722459 NA other upstream 3426165 53495804 ~ 53499730 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G140374 sec62 non-coding NC_035912.1 CM008315.1 10244974 ~ 10248465 (-)