G718931


Basic Information

Item Value
gene id G718931
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 50688240 ~ 50714007 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU816835
gtcaggagacaaactagtctagtttgaaaaacaggcgcctcacaagtcctcaattagcagcttaattaaatagtaccagcaaaacaccagtctcaacgtcaaccctgaagaggcgactccgggatgctggccttctaggcagagttcctctgtccagtgttcctctgtccagtgtctgtgttcttttgcccttcTTAATATTTTAGTTTTATTGTCCAGTCTGAGAAATTGCTTTTTCTTTGCTACTCTGTAGCTAATGTAGCTAGCACAACattccattggaacacaggagtgatggttgctgataatgggtctctgtatgcctatgtagacattccattaaaaatcagccgtttccagctacaatagtcatttacaacattaacaatgtctacactgtatttctgatcaatttcatgttattttagtggacaaaaaaattgcttttctttcaaaaacaaggacatttctaagtgaccccaaacttttgaacggtagtgtatatcaagGCTATAACAGCAAATGTAAAATCCAGTGGTATAGTTTACAGCAAACACAGCCAAAAGTTTCCTGGACCAAATTGTTCCACACTTTGATATTTTACATATCCTCTTCCTAGGCCTACTCAAATGCTATTTTCTAATTAAATATAATATCTTATTTTTTAGATTCAAATGTTCTCCCCTGTCATTGAAATCATTCTCCATATTTGAACGTTAACATTTTTGGTGTAAAAGTCGCTGTCTTCGTTTATGTTAGTAAAGAGTTATGTAGACTGCTCTTTACTGAAATTATTCCATTCCTGATTGTGAAGGTCATTGTCATATAATTCTGACCAGAGCCATACAGTacaaactgagtAAtagggggagaatggccttggtcagggaggtgaccaagaacctgatggtcactctgacagagctccagagctcctctgtggagatgggagaaacttccagaaggacaaccatctatgcagcactccaccaatcaggccttgatggtagagtgcccagaaggaagccactcctcagtaaaaggcacatgacagcctgctttatGTTTGCCAAAtgtcacctaaagactctcagaacatgagaaacatgattctctggtctgatgaaactaaaattgaactctgtggcctgaatgccaagcgttatgTCTGGATGAACCCGatcaaatatctctggagagacctgaaaatagccgtgcagcaatgctccccatccaacttgacagagcttgagaggatctgaacaGAGGAAttgtagaaactccccaaatacagatgtgcaaagcttgtagcgtcatacccaagaagactcgaggctgtaatttctgccaaaggtgcatcaacaaagtactgactaaagggtctgaatacttatgtaaatgtgatattttaattagcaaaaaaaatctaaaaacctgtttttgcttggtgATTagggggaattgtgtgtagattgaggggaaaaaacaattttaataaattttagaataaggctgtaaccgaacaaaatgtggaaaaagtcaaggggtttgaatactttccgaaaacactgtatataaacaaaaCTGTTTTATTCAGTGTGTTTTACTCCGTGTGAATGAAGAGAAATGGTATTCTCTGTATAAGTTGACCATAGCCATGAGGGACTAGTAGTGGTTTGAATAATGTCTCTCTATTTGAGTGAATACTCTATAGAATCATCTGTTTCCATTTTCAATAGCCTCCCTAGTTGAGTAGAGGTTTCCCCATTTTCAATAGCCTCCCTAGTTGAGTAGAGGTTTCCCCATTTTCAATAGCCTCCCTAGTTGAGTAGAGGTTTCCCCATTTTCAATAGCCTCCCTAGTTGAGTAGAGGTTTCCCCATTTCCAAGCACTTCATCATTTGATCTTGGTTAGTGTACGCTAGCTAGGCTAAATGAGTGCTGTTCCTTTTGTGACTATGACAGGAACATGTACAGTAGGCACTCAAGTAGATTAAAATATGGTTGAAAGAATATATTAAAACAGAGACTTGCAACTTGAATACTGAAATCCACTGAAAATACTGGAACACTAAATCAAATGCTAAAACTGAAACTGATACACCTGAAATGGTTCATGGACATTTGTTAATGTCTCAGAAACAAGCCTGTACATTCCTGCTGCTAACTCAATGAGCTAAATGTGATAGACTGTCAAGAGCGTTTGTGAATTATTAAGCACAAATAGCAATAACTGACCAGAACTAGGCAAAGCACTCCTTTGTGTTTGCTTGGTAAGATGAAGAGTTGTGAGCCTTTGAACTTTTATTGAAATGAAACATTTCTTTGTATTATTTATGTGTCGCTTGTTTGAATGAAAGGTTGATTGACGCCACCACTCTTCAAGCTAATGCTGACTTTGGTTCAATTTCGGACGTGTTCTTATCTGCAGTGCCTTTAGAAACTtttcccacatgttgttgtgttacagcctgaatttaaaaatgaCTAAATTGAGATAGTgtcacacaataccctataatgtca

Function

NR:

description
Transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU816835 True 2525 lncRNA 0.39 3 50688240 50714007

Neighbor

gene id symbol gene type direction distance location
LOC110530028 LOC106568726 coding downstream 2982 50678172 ~ 50685258 (-)
LOC110530027 LOC106568725 coding downstream 13923 50665631 ~ 50674317 (-)
LOC110530021 LOC106568720 coding downstream 253452 50412980 ~ 50434788 (-)
LOC110530016 LOC106568717 coding downstream 321970 50337731 ~ 50366270 (-)
LOC110530015 LOC106568800 coding downstream 592311 50093497 ~ 50095929 (-)
LOC110530033 LOC106568728 coding upstream 2121 50716128 ~ 50729934 (-)
LOC110530034 LOC106568730 coding upstream 26969 50740976 ~ 50767911 (-)
LOC110530035 LOC106568731 coding upstream 77213 50791220 ~ 50793594 (-)
LOC110530036 LOC106568732 coding upstream 120533 50834540 ~ 50848805 (-)
LOC110530040 LOC106568735 coding upstream 318558 51032565 ~ 51067801 (-)
G718986 NA non-coding downstream 116500 50571308 ~ 50571740 (-)
G718945 NA non-coding downstream 162526 50525475 ~ 50525714 (-)
G718834 NA non-coding downstream 235407 50357313 ~ 50452833 (-)
G718798 LOC106598425 non-coding downstream 305149 50297400 ~ 50383091 (-)
G718784 NA non-coding downstream 437184 50250751 ~ 50251056 (-)
G719056 NA non-coding upstream 575 50714582 ~ 50714934 (-)
G719068 NA non-coding upstream 20070 50734077 ~ 50734533 (-)
G719069 NA non-coding upstream 22252 50736259 ~ 50738316 (-)
G719114 NA non-coding upstream 104775 50818782 ~ 50818987 (-)
LOC110530011 LOC106568709 other downstream 798988 49866272 ~ 49937001 (-)
G718489 NA other downstream 850544 49785674 ~ 49837696 (-)
G716488 NA other downstream 1899278 48788521 ~ 48788962 (-)
G716480 tnk2 other downstream 1905725 48782121 ~ 48782515 (-)
G716463 LOC106591423 other downstream 1927077 48759912 ~ 48761163 (-)
G719151 NA other upstream 222921 50936928 ~ 50939471 (-)
LOC110530043 LOC106568739 other upstream 538348 51252355 ~ 51259061 (-)
G721275 NA other upstream 2047032 52761039 ~ 52761451 (-)
LOC110529122 LOC106568971 other upstream 2749175 53462034 ~ 53478913 (-)
G722459 NA other upstream 2784141 53495804 ~ 53499730 (-)

Expression


Co-expression Network