G718413 (LOC106568735)


Basic Information

Item Value
gene id G718413
gene name LOC106568735
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 51031070 ~ 51034394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU816290
ctagtatttgtatttatttcagctcatgaaacatggggacGAACAATACGTGGCGTGGCGGTTTTTATGTTTTGTCCAGTGTACTTCCATAAATTTCTTTCAACTGGTACCAGGGGACGTTCAGACGAGTCTTGAGGCCTATGGGCGTCTTGGAGCAAAACAACCGACATATTCGTGTCAGTGAGGGTCATCTTTGCACAGAGggcagtccctccaggattctgCGTTTCTGTGATTCATTGCAAAGTCAACACATATGATGCAGTAATTTGCAATTTTGACCAATTCCCACACCTTTTGCGCATACAAGGGTCCAATCAAAAGTGggtttgtaatttttttttttaccaagtaCTGCACTGTTACCGTGGAAAATGGCCCAATCCAACCACACGTCAACaggttttttcttatttttttccctctctcctccctggccTGTCAGCATATTCGCGTGCCAAGATGGGTGATTGTTGATGGCTGACGGGCAGTATAATGAACAGAAATCAATCTCATTTGCCAACAAAGATAACAGCTAACGACCGTGCGAAACAatttccaaatgttttttttttttttctgAAACTTACAGATCTTTTTTTATTATGGTTCTTCGATTCAACCTTAGGGGGTTAAAAGGAAAAGTATTTAAACTCAAGTTGAACAAAATGGATACTAGACGGTGACAGTCCACCAATAGTCTTAAGATATATCCTCATAATAAACAGCACCCACATTTCACATAAGTGATGTGTTCCTCTGTACCCCAATGCATATATTATTTCAATCAATGAATGTATTAAACTTGAATATAAACTGTAGTTTAAATTTTTTTTTGTCTTCAAGCATTAGTTTGTCCAAAAACATGCTTGACTCATCTCTTGCCCAGTGACTCCTGCACAGGCAATGACCTAACATCACACTCAACCCTCTGTCACCAAATAGGCTGTACACCCTGCAGTTTCCTCTGAAACCTGCCCACCTTGTCTTTGGACGTGTTGATGCAGGCGTTGTGCTTGTTGCTCTGCAGGTGGTGCCAGTACTTGAGCAGTTCGTTGGGGTGAAACTGGTGGGAGGTTATGAGGTGGCTATACTTGCAGCTGGAGTAGGACACCCGCCAGTGGTTGAACAGGAACTCATTAGGCGGCGGCGTGGGTTCGATCCTCAGCTTGGCCAGGCAGATGCCCACGTAAACGTCCTCCAGATGCAGCCTGCGGATACCCAGGGAGGCCCTGTATATCTTTCCAGCCAGGTCCCCTGAGAACACATAGCCCGTTCCTGAGCAGAAAGTAGGGTACACCTCACTGGGGTACAGCTCGGAGGGCATGTACCACTTGCTATTCTTGTTCCTGTTGGGTGCATAGCCCCTCATCAGGTAGCCCGTAATATAGTCCCGTTTGGGGTGCATCTCTGGCTGGAGCAGCTTGTGCACGAGATACTCTGTGTTGACAAAcatgtcactgtctgtcttcaTGACATAGTTGGTGCCCGGGCAGTGCGTGGACACCCAGTGCATGCCCATCAGGGTTTTtatagtcaggttgttgtaagtGTCCATGTAATCCTGCTGGATGATGTCACGGTGCCTCCGGCTCTCGGCCTCCAGGCTGCTCTGCTGCAGGCGGCCCACCCTGCCCTCCTTTACGCCTAACAGGAAGAGCCTAACAAAGCTTAGGCCCGGGACCATGCTCTCGTTCCCCCAGGTCTGCCGAATGGTCTCCCTGGCTTCCACCTGATTGGCCTCCGTGGCTATCAGCAGCACCAGGAAGGGCTCTGGGTTGCCCTCCCGGCACTTGTCGGGCTCATTGATGATGTAAGGGTATGGCTCTGAGGTCAGCAGGCCCCTTAGCCCGACTTCCCCACTCAAGCTAGCATTAGCCGCCACTGAGTTCTCCAGTCCCGTAATCCCCTGTGGAAAGGAGAAGTCCTGAGGGGAACTGAGGTTGGCATTTCTTTCCGGAGGCGAAGGGGGAACCAGTGCGTCCCTCCATAGATTCTGTGATGAGCTGTGATTCCCTTTTTCTTTGGTAGAGTGTAGTCCTCTTTCGGTGTAAGCCACTAGGTGCTCCCTCTGCCATGTTGGCCCCCTGAGGCCCGGCAGCCAGTCTTGATGGCCCAGGATGAtcaggagcgagaggagagacagtaggccAGCGACATGCGTGTAGCAGTGGCGCCTCCTCCACTGCATGGTGTCTGTGTACCACCTCACGTGGGCAGTCGTAACACACTCGGTCAGGTCAGGCGTATGCTGTGTGCGATATTGTTGATGAACCAAGTAATTAGTCGGGAGGTGGTGCATGTATTGAACCGTAACATTCAAGTCACTTTGAATTGTTGGTCTGTTGTCAAACCTGCCCATATGTTTCAACCAGGTTCATGCGGTCTTCAGCAGAGGCCAACG

Function

NR:

description
beta-1,3-galactosyltransferase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU816290 True 2404 lncRNA 0.49 2 51031070 51034394

Neighbor

gene id symbol gene type direction distance location
LOC110530039 NA coding upstream 35244 50990048 ~ 50995826 (+)
LOC110530038 LOC106568734 coding upstream 73619 50955408 ~ 50957451 (+)
LOC110530926 LOC106568801 coding upstream 86411 50943125 ~ 50944659 (+)
LOC110530037 LOC106568733 coding upstream 91481 50933532 ~ 50939589 (+)
mier1b LOC100380719 coding upstream 365446 50648718 ~ 50665624 (+)
LOC110530928 LOC106568738 coding downstream 180033 51214427 ~ 51239797 (+)
LOC110530044 LOC106568740 coding downstream 237852 51272246 ~ 51312687 (+)
ephb3a LOC106568743 coding downstream 385338 51419732 ~ 51465235 (+)
LOC110530050 LOC106568745 coding downstream 475732 51510126 ~ 51512502 (+)
LOC110530929 NA coding downstream 514669 51549063 ~ 51560792 (+)
G718368 NA non-coding upstream 59592 50969683 ~ 50971478 (+)
G718363 NA non-coding upstream 65423 50965448 ~ 50965647 (+)
G718357 NA non-coding upstream 70654 50960193 ~ 50960416 (+)
G718279 LOC106568732 non-coding upstream 182271 50847528 ~ 50848799 (+)
G718255 NA non-coding upstream 212222 50818507 ~ 50818848 (+)
G718444 NA non-coding downstream 74186 51108580 ~ 51108793 (+)
G719353 NA non-coding downstream 194470 51228864 ~ 51229113 (+)
G719339 NA non-coding downstream 216468 51250862 ~ 51251868 (+)
G719338 NA non-coding downstream 217965 51252359 ~ 51259022 (+)
G719369 NA non-coding downstream 230938 51265332 ~ 51265569 (+)
LOC110530024 LOC106568723 other upstream 389904 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 637234 50384296 ~ 50397007 (+)
LOC118965615 NA other upstream 1176878 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 1483985 49546212 ~ 49547085 (+)
G716862 NA other upstream 1697298 49332841 ~ 49333772 (+)
G721689 LOC106583873 other downstream 2342838 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 2636002 53670348 ~ 53674103 (+)
rps28 NA other downstream 2891823 53926018 ~ 53927959 (+)
LOC118965528 LOC106568937 other downstream 3589780 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 4099636 55120291 ~ 55136638 (+)

Expression


Co-expression Network