XLOC_026279 (ubtf)


Basic Information

Item Value
gene id XLOC_026279
gene name ubtf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20041907 ~ 20063782 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051243
GGCGCAGTGCTGGCTAACATTCAACCCTCCCCTTGTTCCAGCACCAGTTCCACACACAAGCAGCGACAGCCTTTGAAGAGACTGCTACCATACGGCTGCACACACCGTGCTTTCACCCCGCTATCCTCGACACTCGAAAAGTCGGGGTAAAAACCAGATTTCTTTACGAGTGTTTCCGGACAATGAATGGAGAAATGGACTCCTCTGCTAAAGCCACTGTTTGGGTGCAGGATGATGTGTTGAAGTTGTTGGATGCCATGAAAGTGAATCTGCCAGAAAAAGATCTGGCCAAATACAAGACATCCGAGTCCCATTTGGATTGGGAGAAAGTGGCTTTTGATGCTTACTCTGCAGAAGTGTGCAAACAGAAATGGCAAGAAGTTTCCCGTGAGATACGCAAGTTCCGCACCCTCACCGAGCTGATCGTGGACGCACAGGACTACATTAAAAATCCATACAAGGGAAAGAAGCTGAAGAAACACCCAGACTTCCCCAAAAAGCCATTGACACCATATTTTCGTTTCTTCATGGAGAAGCGTGCCAAGTATGCTAAGCTACATCCAGAGATGAGCAACCTGGATCTCACAAAAATCCTGTCCAAAAAATACAAGGAGCTCCCAGACCGTAAAAAAGAGAAATACGTGAAAGATTTTCTCAGAGAAAAGGAGACTTTTATGCTGAGCATGATGAAGTTCAAGCAGGAACATCCTGACCTTTTGGAGAACGTTAACAAGAAGTCCAACGTTCCAGAGAAGGCCAAGACACCCCAACAACTGTGGTACAGCCATGAGAAGAAGGCTTTTCTTAAAGCACACCCTGATGCGACCACCAAAGACATCAAGGATAATCTTGGCAAGCAGTGGCCACAGCTTTCAGATAAGAAGAGGATCAAATGGATCGCAAAGTCTCTGGAGCAACATAAACTATATGAGGAAAAGATGCGTGAGTTTATCCAGCAGCATCCAGAGATGAACATGACACAGGGAGACATCGTCAAATCCAGTCTGACCAAAGCAGAACGTCAGCTCAAGGACAAGTTTGATGGGAGGCCAGACAAACCACCTTCaaacggTTATTCTTTGTTCTGTGCTGAGCTGATGTCCAGTATGAAGGACGTTCCCAGTACGGAGCGTATGGTCATGTGCAGCCAGCGCTGGAAACTCCTCAAACAGGCCGAGAAAGACGCATACCAAAAGCGATGTGAACAGaaaaagaaagaatatGAAGTTGAGATGAACCGCTACTTGTTAAGTATCTCAGAGGAGGAACAGCAGAGAATACTGTCAGAACAGAAGATGGGCAGCTTCAAAAAGGCCGGCGGAATCAGCAGCCCGGCTTCAAAAAAGAAAAGCTCTAAAGCAAAGCCTAGCGCAGAAAAGCCCAAGCCGCCCATTTCTGCAATGTTCATATTCTCTGAGGAGAAGCGTCCAAAACTTAAGCAGGAAAAACCTGAGCTTTCTGACATGGAGCTCACCAGACTGCTGGCCCGCATGTGGAATGAGCTTACTGACAAGAAGAAGGAGAAATATAAAACCCTGGAGATGGCCCTGAAGGCAGAGGCTGAAAAACAGAGCAGAGAGGAGAAAGGGAAGCTACCAGAAACGCCCAAAACAGCTCAGGAAATCTGGCAACAGAGCGTCATCGGAGACTATCTGGCCCGGTTTAAGAATGATCGGGCGAAAGCTCAGAAAACCATGGAGGCCACCTGGAACACCATGGAGAAGAAGGAGAAGATCGTGTGGATCAAGAAAGCTGCTGAGGACCAGAAGAGATATGAAAGAGAGCTGAGTGAAATGCGATCCCCTGCCCCAGTGATAACCCCTGGGAAAAAGATGAAATTTGACGGCGAACCTAAGAAACCACCCTCGAATGGTTATCAAAAGTTCTCTCAGGAGATGCTGTCGAATGGCGAACTCAACCATCTGCCCATGAAAGAGCGCATGGGTGAAATCGGAGGCCGCTGGCAGAGACTCCCTCAGAAAGACAAGGACCGCTACAAACGCATTGCAGAGGAGAAACAGAGGCTTTACAAAGTGGAGCTTGAGCAGTGGCTCACGAGTATATCATCACAAGAGCGAGCTGCGTATAAAGAATACAATTCTCTGAAACGGAGGAGTACAGCAAAACCAGGTGGCACCAATGCTAAAGTCAAACCTAAGGCTAAAAGATCGGACGATGAAGAGGATGAAGATGAGGACGATGACGATGAGGATGATGATAAGGACTCTGACGGATCATCCTCTGATGACagtgatgatgacgatgatgacgaCGATGAAGATAATGAAGAAGACGTAGAGGACGAAGAGGTGGACGACAAGGAGAACAAatctgaaagcagcagcagttctTCCAGCTCTGACGATTCATCCGCTTCAGACTCGGACTGAGCCGGAGCCGAGTCAGGCTGAGCCCACAGACTGCCAGAAACGCTGTGAACTGAGCCATGAGCCGAGGGTCTGAGCCTGCTCCCGCACTGCGCTCCTCCCACCACAGGAGGGAGCTGTCACACATCTGCACACCTTCTCTTCTTTTCACCCCTGCACTTCTGCTTTTATTCCTTTCTCCCGCATTCAATTTGCTTGGCAGGTTTTTAGAACTAATAGTCTAAACCGACACCAGATCATTGGGAAAGAATCAAAAGGCTGTAGTGCTCTGCTTTTTGGCTTGACGTGTTATCAGGACGTCCTGCGTTTAAAATTAGAAGAACAGCAAGCAGCAGGCACTGTTGTCTTTTCAGTGAATGAGCCAAAGAGTCTCTTGGTTTTGCAGATTTTATCTTTTCGTTGTTGTTCAGGAGGTACAGGGGACCAAATACTTGCACTCTGAAGAATGTCTGCTTTCTTTTCCTCTGTCTGTACCTCTCCTGTGTTTGCCAGCTGCGTCGTTCCGCTCCCATTTTTGCTTTGGCGTTTTTGTTTTCCTTGCTTTGTCGGTTCAAAACAAATGTGGTATTTCAGGAACAATGAAGCCATTTTTTTGAATGTCACCGCATGGACCCCGCTGGTCTCGGTGCTTGTTCGCAAGGCGTTTGTGCCCTTACCTGCACCCGATGAGGGGGTTAAAGGTGAAAATGgactactttttttgtttgtcctCTTATAGGAATGCTGCCCGTAGCCGTTTCTTTGTGATGTGGTGAAGCCACAGAGGATTTTGAGTTGAAGTTCTCTGTTCATTCAGACTGATGTTACATATTGAGGACTAGTTTATCAGAAGTTCgttagcttttttgtttgtttgtttgttggggCACCAAACTTGATTCCCTCCTGTTTGTTAAAAATGGTTATCTGTCGTTTGAAGCTGACTTTCGTTCCTCTTTCCAACCACTGTTTATTTGGTGCTCCAAAAACCTAAAACGTGATttgatatgttttaaaatatgatgGATGTGAGTTACCCCACAATTCAGTGCACTTATGATGGAATCCCTAGTTCACTATTGcccatttattatttacatattcagTATGCCTCCTGCATTTCACTCATTAGCCCATAATGTCGACCACTTTACAGATCTTTCATGCACCAGCTCAAGGAATGTAACGGAGAAGTTTTATTTAAGAGAGGGGTACCAttatttgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatacgaACAGTTTTGAGGGTGACTGGTATATTCTCTCGTTCCAACACCCTGGCCGGAAATGGCAACTAAGTTAAACCCACAACCCAGCTTCCTGCACTGAGCTAAAACCTTTTACTCAGTATTTTTTTTACGCATTGGGccactgtaatttatttttttcctctgattgCGTTCAATGATTTGCATATGAATACAAACTAATTATTATTTACGGAAGATTGCTATCAAAATAGATGCTCAATTTGCTGAACCAGGCGTGCAATCTTTGACCGAGGCCTGTATCATGTGTGATGCTGCAttattgggggaaaataaaaataCCCGATGGTTCTAGATGATTTGAAAGAAGGGCCGGGATAAGAAACCCAGTGGAACTTTCAAGATTTGTTGATATTTTATAGGATTTTGAGACTTTCAAATAGATTTGGGTTGGGTTCAGTGCTGTTGTAAGGTATTTGTACATAtagatttctctttttttctttctcccttTGTAATGAGTGAATATTATTGCGTTTGTATTTTCAGTTGGCTACACTGCCGTAGCCTCAAGTTAGTTTGTCGATCGGGGGACATGTTTTTAATTTGGTAAGTTTTAGTTTTTACGCCTCcccatgtttgtttatttgtagaaatggcaagaaaaaaaagcttaaatttgTACTGCAGATTTGAAACATTTGGACATTTTCTATAGCAAAAGATGTTATATCCCTGCAATTTACAATTTGAGCAAATAAACCTTCTCTTAAACAGTT
>TCONS_00051244
ATGAATGGAGAAATGGACTCCTCTGCTAAAGCCACTGTTTGGGTGCAGGATGATGTGTTGAAGTTGTTGGATGCCATGAAAGTGAATCTGCCAGAAAAAGATCTGGCCAAATACAAGACATCCGAGTCCCATTTGGATTGGGAGAAAGTGGCTTTTGATGCTTACTCTGCAGAAGTGTGCAAACAGAAATGGCAAGAAGTTTCCCGTGAGATACGCAAGTTCCGCACCCTCACCGAGCTGATCGTGGACGCACAGGACTACATTAAAAATCCATACAAGGGAAAGAAGCTGAAGAAACACCCAGACTTCCCCAAAAAGCCATTGACACCATATTTTCGTTTCTTCATGGAGAAGCGTGCCAAGTATGCTAAGCTACATCCAGAGATGAGCAACCTGGATCTCACAAAAATCCTGTCCAAAAAATACAAGGAGCTCCCAGACCGTAAAAAAGAGAAATACGTGAAAGATTTTCTCAGAGAAAAGGAGACTTTTATGCTGAGCATGATGAAGTTCAAGCAGGAACATCCTGACCTTTTGGAGAACGTTAACAAGAAGTCCAACGTTCCAGAGAAGGCCAAGACACCCCAACAACTGTGGTACAGCCATGAGAAGAAGGCTTTTCTTAAAGCACACCCTGATGCGACCACCAAAGACATCAAGGATAATCTTGGCAAGCAGTGGCCACAGCTTTCAGATAAGAAGAGGATCAAATGGATCGCAAAGTCTCTGGAGCAACATAAACTATATGAGGAAAAGATGCGTGAGTTTATCCAGCAGCATCCAGAGATGAACATGACACAGGGAGACATCGTCAAATCCAGTCTGACCAAAGCAGAACGTCAGCTCAAGGACAAGTTTGATGGGAGGCCAGACAAACCACCTTCaaacggTTATTCTTTGTTCTGTGCTGAGCTGATGTCCAGTATGAAGGACGTTCCCAGTACGGAGCGTATGGTCATGTGCAGCCAGCGCTGGAAACTCCTCAAACAGGCCGAGAAAGACGCATACCAAAAGCGATGTGAACAGaaaaagaaagaatatGAAGTTGAGATGAACCGCTACTTGTTAAGTATCTCAGAGGAGGAACAGCAGAGAATACTGTCAGAACAGAAGATGGGCAGCTTCAAAAAGGCCGGCGGAATCAGCAGCCCGGCTTCAAAAAAGAAAAGCTCTAAAGCAAAGCCTAGCGCAGAAAAGCCCAAGCCGCCCATTTCTGCAATGTTCATATTCTCTGAGGAGAAGCGTCCAAAACTTAAGCAGGAAAAACCTGAGCTTTCTGACATGGAGCTCACCAGACTGCTGGCCCGCATGTGGAATGAGCTTACTGACAAGAAGAAGGAGAAATATAAAACCCTGGAGATGGCCCTGAAGGCAGAGGCTGAAAAACAGAGCAGAGAGGAGAAAGGGAAGCTACCAGAAACGCCCAAAACAGCTCAGGAAATCTGGCAACAGAGCGTCATCGGAGACTATCTGGCCCGGTTTAAGAATGATCGGGCGAAAGCTCAGAAAACCATGGAGGCCACCTGGAACACCATGGAGAAGAAGGAGAAGATCGTGTGGATCAAGAAAGCTGCTGAGGACCAGAAGAGATATGAAAGAGAGCTGAGTGAAATGCGATCCCCTGCCCCAGTGATAACCCCTGGGAAAAAGATGAAATTTGACGGCGAACCTAAGAAACCACCCTCGAATGGTTATCAAAAGTTCTCTCAGGAGATGCTGTCGAATGGCGAACTCAACCATCTGCCCATGAAAGAGCGCATGGGTGAAATCGGAGGCCGCTGGCAGAGACTCCCTCAGAAAGACAAGGACCGCTACAAACGCATTGCAGAGGAGAAACAGAGGCTTTACAAAGTGGAGCTTGAGCAGTGGCTCACGAGTATATCATCACAAGAGCGAGCTGCGTATAAAGAATACAATTCTCTGAAACGGAGGAGTACAGCAAAACCAGGTGGCACCAATGCTAAAGTCAAACCTAAGGCTAAAAGATCGGACGATGAAGAGGATGAAGATGAGGACGATGACGATGAGGATGATGATAAGGACTCTGACGGATCATCCTCTGATGACagtgatgatgacgatgatgacgaCGATGAAGATAATGAAGAAGACGTAGAGGACGAAGAGGTGGACGACAAGGAGAACAAatctgaaagcagcagcagttctTCCAGCTCTGACGATTCATCCGCTTCAGACTCGGACTGA
>TCONS_00051245
ATGAGCGGATCGAGAGAGCTGCGCGTTGACTGGAAGGAGAGCGAGAGAGATGGAGGCGGGGGGAAGTCTCTCAGCTCTGCGGGGACTGGAGCGCCCGTGCCCTGGACCGGCGGCGCAGTGCTGGCTAACATTCAACCCTCCCCTTGTTCCAGCACCAGTTCCACACACAAGCAGCGACAGAGTGTTTCCGGACAATGAATGGAGAAATGGACTCCTCTGCTAAAGCCACTGTTTGGGTGCAGGATGATGTGTTGAAGTTGTTGGATGCCATGAAAGTGAATCTGCCAGAAAAAGATCTGGCCAAATACAAGACATCCGAGTCCCATTTGGATTGGGAGAAAGTGGCTTTTGATGCTTACTCTGCAGAAGTGTGCAAACAGAAATGGCAAGAAGTTTCCCGTGAGATACGCAAGTTCCGCACCCTCACCGAGCTGATCGTGGACGCACAGGACTACATTAAAAATCCATACAAGGGAAAGAAGCTGAAGAAACACCCAGACTTCCCCAAAAAGCCATTGACACCATATTTTCGTTTCTTCATGGAGAAGCGTGCCAAGTATGCTAAGCTACATCCAGAGATGAGCAACCTGGATCTCACAAAAATCCTGTCCAAAAAATACAAGGAGCTCCCAGACCGTAAAAAAGAGAAATACGTGAAAGATTTTCTCAGAGAAAAGGAGACTTTTATGCTGAGCATGATGAAGTTCAAGCAGGAACATCCTGACCTTTTGGAGAACGTTAACAAGAAGTCCAACGTTCCAGAGAAGGCCAAGACACCCCAACAACTGTGGTACAGCCATGAGAAGAAGGCTTTTCTTAAAGCACACCCTGATGCGACCACCAAAGACATCAAGGATAATCTTGGCAAGCAGTGGCCACAGCTTTCAGATAAGAAGAGGATCAAATGGATCGCAAAGTCTCTGGAGCAACATAAACTATATGAGGAAAAGATGCGTGAGTTTATCCAGCAGCATCCAGAGATGAACATGACACAGGGAGACATCGTCAAATCCAGTCTGACCAAAGCAGAACGTCAGCTCAAGGACAAGTTTGATGGGAGGCCAGACAAACCACCTTCaaacggTTATTCTTTGTTCTGTGCTGAGCTGATGTCCAGTATGAAGGACGTTCCCAGTACGGAGCGTATGGTCATGTGCAGCCAGCGCTGGAAACTCCTCAAACAGGCCGAGAAAGACGCATACCAAAAGCGATGTGAACAGaaaaagaaagaatatGAAGTTGAGATGAACCGCTACTTGTTAAGTATCTCAGAGGAGGAACAGCAGAGAATACTGTCAGAACAGAAGATGGGCAGCTTCAAAAAGGCCGGCGGAATCAGCAGCCCGGCTTCAAAAAAGAAAAGCTCTAAAGCAAAGCCTAGCGCAGAAAAGCCCAAGCCGCCCATTTCTGCAATGTTCATATTCTCTGAGGAGAAGCGTCCAAAACTTAAGCAGGAAAAACCTGAGCTTTCTGACATGGAGCTCACCAGACTGCTGGCCCGCATGTGGAATGAGCTTACTGACAAGAAGAAGGTAA

Function

symbol description
ubtf Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to several human genes including UBTF (upstream binding transcription factor).

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030616-252 Predicted to enable DNA binding activity. Predicted to be located in nucleus. Orthologous to several human genes including UBTF (upstream binding transcription factor).

Ensembl:

ensembl_id ENSDARG00000035066

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051243 False 4412 mRNA 0.45 22 20041907 20063671
TCONS_00051244 False 2208 mRNA 0.47 20 20043929 20058417
TCONS_00051245 True 1536 mRNA 0.48 13 20049662 20063782

Neighbor

gene id symbol gene type direction distance location
XLOC_026278 atxn7l3 coding downstream 1271 20025709 ~ 20040636 (-)
XLOC_026277 CR855865.1 coding downstream 49444 19986341 ~ 19992463 (-)
XLOC_026276 NA coding downstream 68287 19971681 ~ 19973620 (-)
XLOC_026275 rnd2 coding downstream 141993 19850937 ~ 19899914 (-)
XLOC_026274 BX572620.1 coding downstream 221100 19813248 ~ 19820807 (-)
XLOC_026280 slc4a1a coding upstream 2079 20065861 ~ 20092124 (-)
XLOC_026281 selenow2b coding upstream 39964 20103746 ~ 20106233 (-)
XLOC_026282 selenow2a coding upstream 44439 20108221 ~ 20118342 (-)
XLOC_026283 NA coding upstream 66492 20130274 ~ 20401724 (-)
XLOC_026284 spop coding upstream 594421 20658203 ~ 20793656 (-)
XLOC_026269 BX322663.2 non-coding downstream 708276 19333504 ~ 19333631 (-)
XLOC_026268 BX546473.1 non-coding downstream 825184 19207234 ~ 19216723 (-)
XLOC_026285 NA non-coding upstream 837284 20901066 ~ 20915710 (-)
XLOC_026295 CR387996.1 non-coding upstream 1137646 21201428 ~ 21206946 (-)
XLOC_026301 CR790381.1 non-coding upstream 1553138 21616920 ~ 21617040 (-)
XLOC_026303 NA non-coding upstream 2088825 22152607 ~ 22155523 (-)

Expression


Co-expression Network