XLOC_026286 (ndufa4l)


Basic Information

Item Value
gene id XLOC_026286
gene name ndufa4l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 20947560 ~ 20957083 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051255
ATGCTAAGTTTTGGGAGATTTGATATCATCTCATCTATCACGATGCTGAGCATGGTCAGCCGGCAACTCAGGAGCCATCCTGCCTTGATCCCACTGTTTATTTTCATTGGCGGCGGATGCACCATGTCTCTGTCATATCTGGCTCGCCTGGCCTTGCGTAACCCTGATGTCTGCTGGGACAAAAAGAACAACCCAGAGCCCTGGAATAAAATGGGGCCCACTGATCAGTACAAGTTCTACGCTGTGAACATGGACTACAGCAAGCTGAAGAAGAACGGTCCTGACTTCTAAACTCATCCAGACGCCCAGTGCTGGACCAAAGgtttaaaacaaactaaagatCAACAAGATGTCCGCACACTTCTCCTCAACCGGCCCCTTGTTTCTATATTAATTTATGCAAAGAGACTAAATTGCACAGTGTTGTCTTTGCTGGGTCCCTTTTTAACATCTGTGATGTCTCTTGTACTTTTTCTTGGTTCTTTGTAGTCAgatttgattaataaagggtttTTCCCAACATACATCGAAAAACTGATTGTCATGATTGTCTGTGTTCGCAAGAATGAAGTAGTCTTCACGTTTACTTTAGCAatagctatatttccatccaaagatttaaattattcttcatcccaattcgcatactttaCTATGCCCTAAAagtgtgtactttttttttgaaGGAAACGTACatgcttttgagtgtgtaacagaaaagTATGCAAGCTTCAGGACATCCGACTTCCTCAttaacagatcgttgtgttgcttGGTTGTGAGCCCTGTCagtcatccacatttctttcatatttaatttcctatgttattggagaagcagcagcgggttaatctgccattcacaggtctttcatgcagagaaatctcctcaggtctttggataattctgCATTCAGGTGTTAATGTCCAAGCACGTCTTTATAAGTTCACTATTGTTGCAGATTAAATATATCACAGAAAACGcaattgaaatattttttcagTTGGCTTGATATTAATTGatagtcatacaaacatctttattGACGCCTCTCTACTTGACATTTGGTCTCTTGTGTCCATCATGttagtttatttacagttttcaacCCGCATTTGtggttttaattaaatttacacACAATGCACTGTGGTTAGAGTATGAACGGTTCCACACTTGTATACCATCTGGAAACCTTTGGCTTACTCTTTTTAACATGCAATGATTTGGGACTTACTAATTCGatttttgagtaatatttagGACAGATGGTACGCGAATTGGGACGCAGGACAATAGACTTATGAGAAGTTCCAGTTTtgagcataaaacatttgcgatttttaaaaacttcatatccagtgagtcaaagagaacaaaattgtaaCTTGATAAACGTGCCAAATATGAAAAAAGAGAAATGAAATTTTCTATGGTAGGAGAAAccactgtgggcctttttttCTTATCTGgtaaattacttgcacctcaaGATTAGGATGAAACACAATGACCACAAGATGACTTTGTCCATTAATGCAGTCCCATCATGCcaagtttttaaaacaaaatcatattttatgcgcatgttgtaatttaatttataaatgtgttttcattgtagtttatgcatttttttttcacctaTCAGATAACGTTCATCCCACTCGCAGCTCGATCAtgcaggttttcaacattcaatGTCAGATACTTCCTAACAAATCATGCTACAACTTTCAGTCTAAGCTCTTGTCATTTCAAATCTGGGCTACTGCAAAGCTCTTCTACCTGGACTCTCATCTTACACTCTTAAAGCTCTACAGATGATCCAGAACTCTGCAGCACATCTGAGCTTCAATGAGCCCAAGAAAGGCCATGTAACACCTCTTTATCTCTCTGCATTGGTTACCAGACAAAACTCAGATCAAGTTGAAATCACTGATTCTTGCTTAAAGAACAGCCACTGGCACTGCATCTTCTGACCTCCACCTGCTTCTGAAGGTCTACATCCCTTCCAGGAGCCTCCGGTCGGTGAGCCTTCTGGTACCATTGCAGATAGGCTATAAGTCACTTTgcaaaaccttttcattcaatgtttAATGCTGGTGGAATGATCTTTCCATTCCCACATGGAATGCTGAGTCACTGGTATCATTCAAGTGACAACTGTAAACACATCTCTTCCACAATCGCCTAAAACCCTGTACGAAGGACTCTGGGCAAAACCAGGACCCCCTTCTCTCCCTCACCTAACCACATGACAACTGAGTGCGCCTTACACAGGCGAGtgtgcttgacaaaccacctgtagaaacaccaTTCTCTCGCTtgctcttcaaaaaaaaaaaaaaaaaaaacattccctcTTACCCTAGCACCTAATTCTGAGCATTAATAGTTCCTTTGTATATTTACCACTTGTGTGTATCGCTGCCTCTTGTTAAAACTGAGCAGGGATTCAGCAATTCAAGTcgctttagaccaggggtcggcaacccgcggctctagagccgcgtgcggctctttagcgctgccctagtggctccctggaacattttcaaaaaatgtttgaaaatggaaaacgatgagggaggaaaatatattttttgttttaatatggtttctataggaggacaaacaatcttaacgttttccaatgctgtgaaagtgtgtagaatatttaattttaacatttctgtcaacgaagttttgcgtcatagcctgcgacacacgtttctatcagcagggcgggatgccaggcaggtagctgttgtaaacaaaccggcggctgtgtgatgcgccatggagcgcaagctgtctttgccaaagatgtacagcggggcacgctttctcattttccctccctgagaaAAGAAGTccatcccgatcactcactcaacggtgattatttacaaggtgcgatcgttgatatgcaaacccctaaccccaaccgtcattgggggaaaagcaaatcgtactaaattgtacgaattagatcgtacgaattcatacgaattagcctctaaatgaaaaagttacgaattgccgtgagattgtgttggttgagcacattcccaggaatgactcgagctgatcttgaaatggaaatggcagactgcgttttattgcactgtttgttgcccagataaggggcacgttgtgcacgttcattttgatgttgttttttggaatcctcaaaataaaaaaaaacattaaaaaaatctgatttctttattgcatttcttttatttcatcaaag
>TCONS_00051256
CTTTCTCAGTTCTGAAATAGACCTGCTGGAGCTCGCTAACGGGCCGCGTTTAATCCCTTTATTTCTCTACAGTTTTGGGAGATTTGATATCATCTCATCTATCACGATGCTGAGCATGGTCAGCCGGCAACTCAGGAGCCATCCTGCCTTGATCCCACTGTTTATTTTCATTGGCGGCGGATGCACCATGTCTCTGTCATATCTGGCTCGCCTGGCCTTGCGTAACCCTGATGTCTGCTGGGACAAAAAGAACAACCCAGAGCCCTGGAATAAAATGGGGCCCACTGATCAGTACAAGTTCTACGCTGTGAACATGGACTACAGCAAGCTGAAGAAGAACGGTCCTGACTTCTAAACTCATCCAGACGCCCAGTGCTGGACCAAAGgtttaaaacaaactaaagatCAACAAGATGTCCGCACACTTCTCCTCAACCGGCCCCTTGTTTCTATATTAATTTATGCAAAGAGACTAAATTGCACAGTGTTGTCTTTGCTGGGTCCCTTTTTAACATCTGTGATGTCTCTTGTACTTTTTCTTGGTTCTTTGTAGTCAgatttgattaataaagggtttTTCCCAACATACATCGAAAAA

Function

GO:

id name namespace
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2756 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV.

Ensembl:

ensembl_id ENSDARG00000099499

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051255 False 3260 mRNA 0.40 5 20947560 20957083
TCONS_00051256 True 598 mRNA 0.45 4 20950286 20957011

Neighbor

gene id symbol gene type direction distance location
XLOC_026285 NA coding downstream 31850 20901066 ~ 20915710 (-)
XLOC_026284 spop coding downstream 153904 20658203 ~ 20793656 (-)
XLOC_026283 NA coding downstream 545836 20130274 ~ 20401724 (-)
XLOC_026282 selenow2a coding downstream 829218 20108221 ~ 20118342 (-)
XLOC_026281 selenow2b coding downstream 841327 20103746 ~ 20106233 (-)
XLOC_026287 slc35b1 coding upstream 6079 20963162 ~ 20982706 (-)
XLOC_026288 fam117aa coding upstream 26312 20983395 ~ 21010979 (-)
XLOC_026289 rundc3aa coding upstream 60970 21018053 ~ 21037840 (-)
XLOC_026290 tlcd3ba coding upstream 87071 21044154 ~ 21062778 (-)
XLOC_026291 nlk1 coding upstream 109232 21066315 ~ 21094525 (-)
XLOC_026277 CR855865.1 non-coding downstream 955097 19986341 ~ 19992463 (-)
XLOC_026276 NA non-coding downstream 973940 19971681 ~ 19973620 (-)
XLOC_026274 BX572620.1 non-coding downstream 1126753 19813248 ~ 19820807 (-)
XLOC_026295 CR387996.1 non-coding upstream 244345 21201428 ~ 21206946 (-)
XLOC_026301 CR790381.1 non-coding upstream 659837 21616920 ~ 21617040 (-)
XLOC_026303 NA non-coding upstream 1195524 22152607 ~ 22155523 (-)
XLOC_026308 NA non-coding upstream 1451707 22408790 ~ 22421923 (-)
XLOC_026310 NA non-coding upstream 2082425 23039508 ~ 23069636 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110538650 ndua4 misc NC_048576.1 CM023230.2 82345174 ~ 82373637 (+)