XLOC_026289 (rundc3aa)


Basic Information

Item Value
gene id XLOC_026289
gene name rundc3aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21018053 ~ 21037840 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051261
AAGATTGTGGGCACACATGCAGGCGGAAGGAGGGAGGGGTTTGATCCGCGCCGGGAAGCTGGTGGCTCGGTGACGGTGATGATGCAGCCTCGGCCGAGTGAAGAAAGTAAGGCTGTCTCCAGACCGCGATGGCTATGGGTCTAACGTCGAAAAAAACCTCTTCTAGAAACATCGGCGTGGAGCGCAAGAATCTCATCACCGTCTGCAGGTTTTCTGTGAAGACATTGTTGGAAAAGTACACTGCTGAACCTATTGATGACTCGTCAGAGGAATTCATCAACTTTGCAGCAATTTTGGAGCACATCCTCAGTCACCGCTTCAAAGGTCCTGGTGGTTGGTTCAGTTCAGATGGCCAGAGGAGTTTTTGGGACTATATCCGTCTGGCCTGCAGTAAAGTCTACAACAACTGCATCAGTAGCATTGAGAGCATTGAAAACATTAGCACATCACGAGCAAAGGGACGAGCCTGGATTCGTGTAGCTTTAATGGAGAAGCGTTTATCTGAATATGTAGCCATCGCATTAAGAGACACTCGAACTACCAGACGATTTTATGATGATGGTGCCGTAATGCTAAGAGAGGAGGCTACTGTACTAACAGGGATGCTTATTGGACTCAGTGCCATTGACTTCAGTTTCTGTCTGAAAGGAGAGGTTTTAGATGGGAAGACGCCTGCAGTTATAGACTACACACCTTACCTGAAGTTCACTCAGAGCTATGACTATCTGAGCGATGAGGAAGACCGTCGCAGTGTGGACAGCAGTGCTAGTGATGAGAGTGTTGCCGAGCATCCTTACATTCCTCTGGTCACAGACGAAGAAACCTGGAGTAACAAGTGCCGAAAGATGGAGCAACGATTCAAGATTGTTAATGCTCAAAAGGGTTATTTGGAGGAACTGGTGCGCTTAAGGGAGTCGCAGCTGAAAAATGTCGAAACTGAAAACAAGAGGCTAGATGCTAAACTAGAGGAACTACAGGTCCAGAGTCAACAAGAGAAGAAAGAACTGGAGGCCATCATACTGGAGCTACAAGCACAAATCACTGGCATCATTCCTTGTGAGCCTTCTCATTTGGTAAAAGGCCTATCTATTCCACTAATTAACCAATGGGCAACTGCACAAGCCACAAACAACCAAGGAAATGTAAAGCTGTTTCGTAGGAGAAGTTTCCACAGTTTGGACCTCTCAGCTGATTTAAGTTTGAATTCTGACTCTCAAAAAGAAGATGGCAATCAAAATGGAGACACGGTCTGGTCAGCAgCTAAAGACAACACTCCCTCTATGCTTGGTCTATGCGGTTCTTTGGCTTCTCTTCCCAGCTGTAAGTCTTTGGCAAGTCTTAAATCCAGTGAGTATTTGGTCAACATCAGCACAGAGCCAAGTCCTGCCCTGTCCCCCAGCTAGAGGACGCCAAATCAACCAACAAGACCGCTGTAGTTTACTCCAAAGAAACATACTGTAAACAACCATCCAACTAACATCGCCCCCAATGTGAATTgatcaatatataatttattgtaGGTATGCAGCACAAGGGTATTTTCCCAAGTTTTTAACCCCTTCAGATCTGAATCATGTTCCAGGTTTCAGAAAAATGTAGAAGTATTTTTTCCCTGTTCTTAAGGCTTCCATAAATGAcaccaaataaaataattataatgttaaTAATCTTTAATTCACTTTGTTGTCCATCTTAATGGACATCAATGTACaacaggggtctgttctttgtatgtggattactcaattagctgggtttggttattgacgatttgac

Function

symbol description
rundc3aa Orthologous to human RUNDC3A (RUN domain containing 3A).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-533 Orthologous to human RUNDC3A (RUN domain containing 3A).

Ensembl:

ensembl_id ENSDARG00000007245

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051261 True 1776 mRNA 0.44 11 21018053 21037840

Neighbor

gene id symbol gene type direction distance location
XLOC_026288 fam117aa coding downstream 7074 20983395 ~ 21010979 (-)
XLOC_026287 slc35b1 coding downstream 35347 20963162 ~ 20982706 (-)
XLOC_026286 ndufa4l coding downstream 60970 20947560 ~ 20957083 (-)
XLOC_026285 NA coding downstream 102343 20901066 ~ 20915710 (-)
XLOC_026284 spop coding downstream 224397 20658203 ~ 20793656 (-)
XLOC_026290 tlcd3ba coding upstream 6314 21044154 ~ 21062778 (-)
XLOC_026291 nlk1 coding upstream 28475 21066315 ~ 21094525 (-)
XLOC_026292 maza coding upstream 58187 21096027 ~ 21118969 (-)
XLOC_026293 cdipt coding upstream 87453 21125293 ~ 21137362 (-)
XLOC_026294 taok2a coding upstream 100700 21138540 ~ 21185016 (-)
XLOC_026283 NA non-coding downstream 616329 20130274 ~ 20401724 (-)
XLOC_026277 CR855865.1 non-coding downstream 1025590 19986341 ~ 19992463 (-)
XLOC_026276 NA non-coding downstream 1044433 19971681 ~ 19973620 (-)
XLOC_026274 BX572620.1 non-coding downstream 1197246 19813248 ~ 19820807 (-)
XLOC_026295 CR387996.1 non-coding upstream 163588 21201428 ~ 21206946 (-)
XLOC_026301 CR790381.1 non-coding upstream 579080 21616920 ~ 21617040 (-)
XLOC_026303 NA non-coding upstream 1114767 22152607 ~ 22155523 (-)
XLOC_026308 NA non-coding upstream 1370950 22408790 ~ 22421923 (-)
XLOC_026310 NA non-coding upstream 2001668 23039508 ~ 23069636 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_03396650_03402951 NA coding CI01000034 null 3396650 ~ 3403134 (+)