XLOC_026290 (tlcd3ba)


Basic Information

Item Value
gene id XLOC_026290
gene name tlcd3ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21044154 ~ 21062778 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051262
aaaagtaaaattaatctCTTGTCAACACATATACGACCGGGGCCGTTCACAAAGACGGGATTTGTGACCCGAAAGCGAAGCACATGAGGCGGTCAGAGAGGCAGAACCGGGGACCACAGTGGTTGCTTGGATACCTGCTTCTCCCTTCATCCATCTGGTCCAGGTGCTGCCAAACCAAACTGGTGAAGCTTTCGGGGATCAAGCTCTTCGGATGAATTGATAACAACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATACAGACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGACTGGTCTCCTCCGTTCAAGCCATTATGGCATCCTCTGCTGGATACATCATCGCCTGTTCTTGTAAAGACATCATCGAGGACCAGCATTGGCTCACCACCAGCTATATCCTCTTTGCAGTCCCCTACTTCGTTTATGACATCTATGCCATGTTCTTGTGCTACTGGTACAAACTTCAGGTTAAAGATCACGAGGAGGAAAGCGAGACCAAACCGATGAGATCTGCCATCAGGGGATACCTGCACCGCGAGTTCCTCATGGTCCTACATCATGTGGTCATGGTCACTGTGTGCTTCCCCGTGTCTGTGTTCTGGAGACAGGGCAAAGGGGATTATTTCCAGGGTGTGATGTTTCTGGCAGAACTCAGCACCCCGTCTGTCTGTCTGGGAAAAATACTCATCCAGTACAAGCAACAGCACACTCTCCTACATAAAGTCAATGGAGCTCTTATGCTGGTCACTTTCTTCATCTGCAGAGTTGTTCTATTCCCCTACCTCTACTACGCCTATGGCAGATACGCGTCCATCCCCTTCTACATGGTGCCGCTGTCTGTTCCCTGGCAGTGTAACGTTGGTGCGGCTTTGCTGATGGCCCCGCAGGTCTACTGGTTTTCCCTCATCTGCAGAGGCGCCTTCCGCCTCTTCACCGGAGCCTCGCGGCACAAAGCACCCATTAGCAACACAGACTCTGAGCCCAAATCCTCCCTCCTGCCCCCCGCCAACGGATACAGCCCAAGAGAGACCGACTCgcactgagagagagagattgagagaATGAGATAGTAGGTACAGGGTTGTTAGGCCAAATAGGAAAACGAAGGCAGATCATCTCATTACAATGGATAAGATCTACCTTTGACCCAGTGGCTCGGGTcagtaagcaaaaaaaaaaaaa
>TCONS_00051263
AACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGACTGGTCTCCTCCGTTCAAGCCATTATGGCATCCTCTGCTGGATACATCATCGCCTGTTCTTGTAAAGACATCATCGAGGACCAGCATTGGCTCACCACCAGCTATATCCTCTTTGCAGTCCCCTACTTCGTTTATGACATCTATGCCATGTTCTTGTGCTACTGGTACAAACTTCAGGTTAAAGATCACGAGGAGGAAAGCGAGACCAAACCGATGAGATCTGCCATCAGGGGATACCTGCACCGCGAGTTCCTCATGGTCCTACATCATGTGGTCATGGTCACTGTGTGCTTCCCCGTGTCTGTGTTCTGGAGACAGGGCAAAGGGGATTATTTCCAGGGTGTGATGTTTCTGGCAGAACTCAGCACCCCGTCTGTCTGTCTGGGAAAAATACTCATCCAGTACAAGCAACAGCACACTCTCCTACATAAAGTCAATGGAGCTCTTATGCTGGTCACTTTCTTCATCTGCAGAGTTGTTCTATTCCCCTACCTCTACTACGCCTATGGCAGATACGCGTCCATCCCCTTCTACATGGTGCCGCTGTCTGTTCCCTGGCAGTGTAACGTTGGTGCGGCTTTGCTGATGGCCCCGCAGGTCTACTGGTTTTCCCTCATCTGCAGAGGCGCCTTCCGCCTCTTCACCGGAGCCTCGCGGCACAAAGCACCCATTAGCAACACAGACTCTGAGCCCAAATCCTCCCTCCTGCCCCCCGCCAACGGATACAGCCCAAGAGAGACCGACTCgcactgagagagagagattgagagaATGAGATAGTAGGTACAGGGTTGTTAGGCCAAATAGGAAAACGAAGGCAGATCATCTCATTACAATGGATAAGATCTACCTTTGACCCAGTGGCTCGGGTcagtaagc
>TCONS_00051264
TTCACAAAGACGGGATTTGTGACCCGAAAGCGAAGCACAGTGCTGCCAAACCAAACTGGTGAAGCTTTCGGGGATCAAGCTCTTCGGATGAATTGATAACAACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGACTGGTCTCCTCCGTTCAAGCCATTATGGCATCCTCTGCTGGATACATCATCGCCTGTTCTTGTAAAGACATCATCGAGGACCAGCATTGGCTCACCACCAGCTATATCCTCTTTGCAGTCCCCTACTTCGTTTATGACATCTATGCCATGTTCTTGTGCTACTGGTACAAACTTCAGGTTAAAGATCACGAGGAGGAAAGCGAGACCAAACCGATGAGATCTGCCATCAGGGGATACCTGCACCGCGAGTTCCTCATGGTCCTACATCATGTGGTCATGGTCACTGTGTGCTTCCCCGTGTCTGTGTTCTGGAGACAGGGCAAAGGGGATTATTTCCAGGGTGTGATGTTTCTGGCAGAACTCAGCACCCCGTCTGTCTGTCTGGGAAAAATACTCATCCAGATACGCGTCCATCCCCTTCTACATGGTGCCGCTGTCTGTTCCCTGGCAGTGTAACGTTGGTGCGGCTTTGCTGATGGCCCCGCAGGTCTACTGGTTTTCCCTCATCTGCAGAGGCGCCTTCCGCCTCTTCACCGGAGCCTCGCGGCACAAAGCACCCAT
>TCONS_00051265
AGTTACTAAGAGTCGCGGTGcagatttaaaagtaaaattaatctCTTGTCAACACATATACGACCGGGGCCGTTCACAAAGACGGGATTTGTGACCCGAAAGCGAAGCACACAGGTGCTGCCAAACCAAACTGGTGAAGCTTTCGGGGATCAAGCTCTTCGGATGAATTGATAACAACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATACAGACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGACTGGTCTCCTCCGTTCAAGCCATTATGGCATCCTCTGCTGGATACATCATCGCCTGTTCTTGTAAAGACATCATCGAGGACCAGCATTGGCTCACCACCAGCTATATCCTCTTTGCAGTCCCCTACTTCGTTTATGACATCTATGCCATGTTCTTGTGCTACTGGTACAAACTTCAGGTTAAAGATCACGAGGAGGAAAGCGAGACCAAACCGATGAGATCTGCCATCAGGGGATACCTGCACCGCGAGTTCCTCATGGTCCTACATCATGTGGTCATGGTCACTGTGTGCTTCCCCGTGTCTGTGTTCTGGAGACAGGGCAAAGGGGATTATTTCCAGGGTGTGATGTTTCTGGCAGAACTCAGCACCCCGTCTGTCTGTCTGGGAAAAATACTCATCCAGTACAAGCAACAGCACACTCTCCTACATAAAGTCAATGGAGCTCTTATGCTGGTCACTTTCTTCATCTG
>TCONS_00051266
aaaagtaaaattaatctCTTGTCAACACATATACGACCGGGGCCGTTCACAAAGACGGGATTTGTGACCCGAAAGCGAAGCACAGTGCTGCCAAACCAAACTGGTGAAGCTTTCGGGGATCAAGCTCTTCGGATGAATTGATAACAACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATACAGACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGACTGGTCTCCTCCGTTCAAGCCATTATGGCATCCTCTGCTGGATACATCATCGCCTGTTCTTGTAAAGACATCATCGAGGACCAGCATTGGCTCACCACCAGCTATATCCTCTTTGCAGTCCCCTACTTCGTTTATGACATCTATGCCATGTTCTTGTGCTACTGGTACAAACTTCAGGTTAAAGATCACGAGGAGGAAAGCGAGACCAAACCGATGAGATCTGCCATCAGGGGATACCTGCACCGCGAGTTCCTCATGGTCCTACATCATGTGGTCATGGTCACTGTGTGCTTCCCCGTGTCTGTGTTCTGGAGACAGGGCAAAGGGGATTATTTCCAGGGTGTGATGTTTCTGGCAGAACTCAGCACCCCGTCTGTCTGTCTGGGAAAAATACTCATCCAGGTACTAAACACAAACATTCTCCTCCATCTTCCTGTGTTTTTCTTTCATTGTATCAGTGCATCTTTCTTTTTACTGACC
>TCONS_00051267
agatttaaaagtaaaattaatctCTTGTCAACACATATACGACCGGGGCCGTTCACAAAGACGGGATTTGTGACCCGAAAGCGAAGCACATGAGGCGGTCAGAGAGGCAGAACCGGGGACCACAGTGGTTGCTTGGATACCTGCTTCTCCCTTCATCCATCTGGTCCAGCAGGTGCTGCCAAACCAAACTGGTGAAGCTTTCGGGGATCAAGCTCTTCGGATGAATTGATAACAACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATACAGACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGACTGGTCTCCTCCGTTCAAGCCATTATGGCATCCTCTGCTGGATACATCATCGCCTGTTCTTGTAAAGACATCATCGAGGACCAGCATTGGCTCACCACCAGCTATATCCTCTTTGCAGTCCCCTACTTCGTTTATGACATCTATGCCATGTTCTTGTGCTACTGGTACAAACTTCAGGTTAAAGATCACGAGGAGGAAAGCGAGACCAAACCGATGAGATCTGCCATCAGGGGATACCTGCACCGCGAGTTCCTCATGGTCCTACATCATGTGGTCATGGTCACTGTGTGCTTCCCCGTGTCTGTGTTCTGGAGACAGGGCAAAGGGGATTATTTCCAGGGTGTGATGTTTCTGGCAGAACTCAGCACCCCGTCTGTCTGTCTGGGA
>TCONS_00051268
aattaatctCTTGTCAACACATATACGACCGGGGCCGTTCACAAAGACGGGATTTGTGACCCGAAAGCGAAGCACACAGGTGCTGCCAAACCAAACTGGTGAAGCTTTCGGGGATCAAGCTCTTCGGATGAATTGATAACAACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATtgatcAGATTTTGACAGACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGACTGGTCTCCTCCGTTCAAGCCATTATGGCATCCTCTGCTGGATACATCATCGCCTGTTCTTGTAAAGACATCATCGAGGACCAGCATTGGCTCACCACCAGCTATATCCTCTTTGCAGTCCCCTACTTCGTTTATGACATCTATGCCATGTTCTTGTGCTACTGGTACAAACTTCAGGTTAAAGATCACGAGGAGGAAAGCGAGACCAAACCGATGAGATCTGCCATCAGGGGATACCTGCACCGCGAGTTCCTCATGGTCCTACATCATGTGGTCATGGTCACTGTGTGCTTCCCCGTGTCTGTGTTCTGGAGACAGGGCAAAGG
>TCONS_00051269
GcagatttaaaagtaaaattaatctCTTGTCAACACATATACGACCGGGGCCGTTCACAAAGACGGGATTTGTGACCCGAAAGCGAAGCACACAGGTGCTGCCAAACCAAACTGGTGAAGCTTTCGGGGATCAAGCTCTTCGGATGAATTGATAACAACATGTGGACCGTCTCACAGATGCCTCCTGGACCTTGTGAACCGATTTCTGCAAGACTGTGACAGGATTGTTTTGGCCTTCATCTGACGCTGCTCAACCTTAATACAGACAGTGACGTTGAGCAACATTTCCCGAGATTATGCTGAGCATCCTTGCAGCTGGCTCCATATTCTTCCCAGGCCTCTTTCTGCTGTCCAAGCGATTTCTGAAACATGCTCCTGGGCTCAAATGGAGCGAGAAGGATGCTGTCATCGTCTCATCCAGGTAAATAAGGGGAAGAGAAAGTGAGACGTGTCGAGAGGAGCTGTCAGGCTCAAGCTACCTGAGTTTTGTTTTACTTGTGTATCCAGTaaagaacacatttttttttctttttataaagaacattaaattaagttttagttaaaaaaattaaataaacttaagaattgtttttaataattttaaatcagTGATTGTGACAAGTGCATCCTCTGTGTAAGCATAAAAATCCatcaataaaatctaaataataaaaaaaaaa

Function

symbol description
tlcd3ba Predicted to enable sphingosine N-acyltransferase activity. Acts upstream of or within central nervous system development; eye development; and lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in brain; central nervous system; epiphysis; head; and neurons. Orthologous to human TLCD3B (TLC domain containing 3B).

GO:

id name namespace
GO:0035264 multicellular organism growth biological_process
GO:0055088 lipid homeostasis biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0001654 eye development biological_process
GO:0007420 brain development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2046 Predicted to enable sphingosine N-acyltransferase activity. Acts upstream of or within central nervous system development; eye development; and lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in brain; central nervous system; epiphysis; head; and neurons. Orthologous to human TLCD3B (TLC domain containing 3B).

Ensembl:

ensembl_id ENSDARG00000026875

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051262 False 1382 mRNA 0.50 9 21044154 21062751
TCONS_00051263 False 1141 mRNA 0.51 7 21044167 21061931
TCONS_00051264 False 923 mRNA 0.51 7 21044375 21062706
TCONS_00051265 False 911 mRNA 0.49 7 21047361 21062778
TCONS_00051266 False 891 mRNA 0.48 6 21047697 21062751
TCONS_00051267 False 886 mRNA 0.50 7 21047790 21062757
TCONS_00051268 False 745 mRNA 0.49 7 21047851 21062743
TCONS_00051269 True 680 lncRNA 0.40 3 21056731 21062759

Neighbor

gene id symbol gene type direction distance location
XLOC_026289 rundc3aa coding downstream 6314 21018053 ~ 21037840 (-)
XLOC_026288 fam117aa coding downstream 33175 20983395 ~ 21010979 (-)
XLOC_026287 slc35b1 coding downstream 61448 20963162 ~ 20982706 (-)
XLOC_026286 ndufa4l coding downstream 87071 20947560 ~ 20957083 (-)
XLOC_026285 NA coding downstream 128444 20901066 ~ 20915710 (-)
XLOC_026291 nlk1 coding upstream 3537 21066315 ~ 21094525 (-)
XLOC_026292 maza coding upstream 33249 21096027 ~ 21118969 (-)
XLOC_026293 cdipt coding upstream 62515 21125293 ~ 21137362 (-)
XLOC_026294 taok2a coding upstream 75762 21138540 ~ 21185016 (-)
XLOC_026295 CR387996.1 coding upstream 138650 21201428 ~ 21206946 (-)
XLOC_026283 NA non-coding downstream 642430 20130274 ~ 20401724 (-)
XLOC_026277 CR855865.1 non-coding downstream 1051691 19986341 ~ 19992463 (-)
XLOC_026276 NA non-coding downstream 1070534 19971681 ~ 19973620 (-)
XLOC_026274 BX572620.1 non-coding downstream 1223347 19813248 ~ 19820807 (-)
XLOC_026301 CR790381.1 non-coding upstream 554142 21616920 ~ 21617040 (-)
XLOC_026303 NA non-coding upstream 1089829 22152607 ~ 22155523 (-)
XLOC_026308 NA non-coding upstream 1346012 22408790 ~ 22421923 (-)
XLOC_026310 NA non-coding upstream 1976730 23039508 ~ 23069636 (-)

Expression


Co-expression Network