G720829


Basic Information

Item Value
gene id G720829
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 52838834 ~ 52853293 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU818928
cttccaaagttgtggcaaaatggcttaaggacaacaacgtcaaggtattggagtgggcatcaaaaaagccctgacctcaatcctatagaaaatgtgtgggcagaactgaaaaagcatgtgcgagcaaggagtcctaccaacctgactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaacttattgtggcaagcttgtggaaggatgaccaaaacgtttgacccaagttaaacaatttaacggcaatgctacgaaatactaattgagtgtatgtaaacttctgacccactgggaatttgatgaaagaaataaaagctgaaataaataattctctactattattctgacatttcagtcttaaaataaagtggtgatcctaactgacctaagacagggaattttgaaAAGTCaagtcaggaattgtgtaaaactgagtttaaatgtatttggctaaggtgtatgtaatcttccgacttcaactgtatatactgtataatgaatGTGAGGTTCAAGTGGTGAAGTGCCCCTTTAAGGTCTATGTTATACAGAGGCTACTCCTCTAGTTTTGGTCACTCAGCCTATTTTCCCTTCCTCCCTAACCAACCCAAATCACTGCAAAgacaggttctctctctctgtgtagtacCTGTTGGATTGTTAACCTCAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU818928 True 681 lncRNA 0.40 2 52838834 52853293

Neighbor

gene id symbol gene type direction distance location
LOC110530086 LOC106568992 coding upstream 63475 52771935 ~ 52775359 (+)
trnap-ugg-10 NA coding upstream 73262 52765413 ~ 52765655 (+)
agxtb agxt coding upstream 379217 52448271 ~ 52459617 (+)
LOC110530076 LOC106568765 coding upstream 556441 52255134 ~ 52282393 (+)
dis3l2 dis3l2 coding upstream 590572 52230678 ~ 52248262 (+)
LOC110530089 LOC106568990 coding downstream 3999 52857292 ~ 52904590 (+)
LOC110530091 LOC106568987 coding downstream 80280 52933573 ~ 52939689 (+)
hfm1 LOC106568985 coding downstream 114903 52968196 ~ 52994389 (+)
rpap2 LOC106568983 coding downstream 147867 53001160 ~ 53015071 (+)
rpl5a LOC106568981 coding downstream 201244 53054537 ~ 53059566 (+)
G720803 NA non-coding upstream 57533 52781097 ~ 52781301 (+)
G720802 NA non-coding upstream 59489 52779047 ~ 52779345 (+)
G720795 NA non-coding upstream 67662 52770945 ~ 52771172 (+)
G720792 NA non-coding upstream 70375 52768145 ~ 52768459 (+)
ccdc18 LOC106568977 non-coding downstream 265911 53088713 ~ 53121268 (+)
G720979 NA non-coding downstream 274780 53128073 ~ 53128294 (+)
gng12a gbg12 non-coding downstream 337869 53191105 ~ 53251843 (+)
G721056 NA non-coding downstream 429812 53283105 ~ 53283355 (+)
G721613 NA non-coding downstream 464810 53318103 ~ 53318320 (+)
LOC110530024 LOC106568723 other upstream 2197668 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 2444998 50384296 ~ 50397007 (+)
LOC118965615 NA other upstream 2984642 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 3291749 49546212 ~ 49547085 (+)
G716862 NA other upstream 3505062 49332841 ~ 49333772 (+)
G721689 LOC106583873 other downstream 523939 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 817103 53670348 ~ 53674103 (+)
rps28 NA other downstream 1072924 53926018 ~ 53927959 (+)
LOC118965528 LOC106568937 other downstream 1770881 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 2280737 55120291 ~ 55136638 (+)

Expression


Co-expression Network