G720979



Basic Information


Item Value
gene id G720979
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53128073 ~ 53128294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU819086
GTTTTGTCCCTAATATTCATCACATCAAGAAAAGTGATTTGTGATGGGTCATATTTAATGGTGAAATGAAGGGGTTCATTCATAGAGTTTAGAGAAGCATGGAATTCACTATACTCTGCCTGAGAATGTATTATTGGCAGACTTTCAGTAGAAGTAGAAGCTAGTTGACACATTGGCTATCTGTTTGCTTGCTGGAGGATCaaactgaagtgtgtgtgtgtg

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU819086 True 222 lncRNA 0.38 1 53128073 53128294

Neighbor


gene id symbol gene type direction distance location
ccdc18 LOC106568977 coding upstream 6805 53088713 ~ 53121268 (+)
mtf2 LOC106568979 coding upstream 47530 53070354 ~ 53080543 (+)
rpl5a LOC106568981 coding upstream 68507 53054537 ~ 53059566 (+)
LOC118965683 NA coding upstream 69841 53058109 ~ 53058232 (+)
rpap2 LOC106568983 coding upstream 113002 53001160 ~ 53015071 (+)
wls LOC106568975 coding downstream 25587 53153881 ~ 53181479 (+)
gng12a gbg12 coding downstream 62811 53191105 ~ 53251843 (+)
LOC118965525 NA coding downstream 130146 53258440 ~ 53280342 (+)
LOC110530108 LOC106568973 coding downstream 197294 53325588 ~ 53336053 (+)
LOC110530110 LOC106569025 coding downstream 323854 53452148 ~ 53455033 (+)
G720829 NA non-coding upstream 274780 52838834 ~ 52853293 (+)
G720803 NA non-coding upstream 346772 52781097 ~ 52781301 (+)
G720802 NA non-coding upstream 348728 52779047 ~ 52779345 (+)
G720795 NA non-coding upstream 356901 52770945 ~ 52771172 (+)
G721056 NA non-coding downstream 154811 53283105 ~ 53283355 (+)
G721613 NA non-coding downstream 189809 53318103 ~ 53318320 (+)
G721635 NA non-coding downstream 207966 53336260 ~ 53336461 (+)
G721639 NA non-coding downstream 213983 53342277 ~ 53342488 (+)
LOC110530024 LOC106568723 other upstream 2486907 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 2734237 50384296 ~ 50397007 (+)
LOC118965615 NA other upstream 3273881 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 3580988 49546212 ~ 49547085 (+)
G716862 NA other upstream 3794301 49332841 ~ 49333772 (+)
G721689 LOC106583873 other downstream 248938 53377232 ~ 53377705 (+)
mrpl34 mrpl34 other downstream 542102 53670348 ~ 53674103 (+)
rps28 NA other downstream 797923 53926018 ~ 53927959 (+)
LOC118965528 LOC106568937 other downstream 1495880 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 2005736 55120291 ~ 55136638 (+)

Expression



Co-expression Network