XLOC_026293 (cdipt)


Basic Information

Item Value
gene id XLOC_026293
gene name cdipt
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21125293 ~ 21137362 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051275
CGGCGTGCGCGCGTACAGGAAACATGACGTCACGCGCCACGCTCATCTACAGTCCTCCAGCAGTCAGAGGGAGTTGAGGGAAACAGAAAGCTAGAAGACAAATTCAGGGAGCTCCGTCCAAAGAAAGAAACTCTCGGCATCATGACCGAAGAAAATATATTCCTGTTCGTCCCGAATTTAATCGGATATGCCCGTATCGTACTGGCTCTGGTGTCCTTCTTCCTGATGCCCTGCTGCCCAGGCCCAGCAGTGTTTTGTTACCTGCTGAGTGCCCTGTTGGATGCCTTCGATGGACACGCAGCCCGTGCGCTCAATCAAGGTACAAAATTTGGTGCAATGCTGGACATGTTGACCGATCGTTGTGCCACCATGTGTTTGCTGGTGAACCTGGCACTGCTGTACCCGTCCTACACTTTTCTGTTCCAGCTCAGCATGTGTCTGGACGTGGCCAGTCACTGGCTGCATCTGCACAGTTCCATGATGAAGGGAGCCACTAGTCACAAGGCCATTGATCTCTCTGGCAACCCCATTTTACGGCTGTACTATACATCCAGGccggTGCTGTTTTTCATGTGTATGGGGAATGAGCTGTTCTTCTGCCTGCTGTATATAATGTACTACATCGAAGAACCCCAGGTATGGCTGCAGTGGCTGCTGGGAGTTTGCGGCGTGGTGTGTCTGCTGAAGTCTGGCATAAGTTTCCTTCACCTCATCACCGCTTCCCGCAACATGGCTGCAATCGATGTGGCCGACCGAGAGAAAGAGCGGAGCAAAGCACAATAAGACATGAGCACATAGAGATACCAAGAAATAGATGGAGAGATGCACAGAGAGAACGTGGGCCAGTGTAGATGAGGGAAATCAGTCACGGGACCTAGCAAATCCTCACtgagcttatatatatatttatttgaatatcgATTATCAGTGACTTAAAACCAGGGCAAAGATGTATCCATATTCCTATTCTAGTTGTGCTGTTGATGGAGCTAGTTGCACTATGAGTGTACTATGTTTATGTCATCTTTGGGGGTGTtttcatattcatttttatttttggggggttgTTTTATATATGTTAATCTAAATATCATGCCGTTATATTGGGTTTAGAATAGCACTGCTATATTTCTACAAACATACAAGACAGGCAGGCACATACATTCCACACTTCAACTGAAAGCCACGTGAGTATTACTGTATTTGGtggttgtttttatcattttattattattattattattgatttgaaCTGTATTTGAGCCTGTCTATCACTGTTTTTGTCACAAATAATATTTATCAGTTTGAAGAGCGCAAAGCCATTATGATTCAAGTGGCTTTGGCATTATTTTCGTCCAGAGCCTTCTGAATGTATTATTAGGTTGTAGTAGAGGGGTAGACATTCTGTTTGCGGTCTGAAGTTTTAGAGCTGTGATTATACATGATCAGAAATATATGGGCGTTATATGATTGTGGGTGAAAAAACAAGTCATTTTGTACTGTGATAATAAGTGGTTTGACAATAAAGATATCCTGACAGCGAGATGAAGCTGTATTTCTTAA

Function

symbol description
cdipt Predicted to enable CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity. Acts upstream of or within several processes, including camera-type eye development; endoplasmic reticulum tubular network maintenance; and intestinal epithelial structure maintenance. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in brain; digestive system; eye; and fin. Used to study fatty liver disease. Orthologous to human CDIPT (CDP-diacylglycerol--inositol 3-phosphatidyltransferase).

GO:

id name namespace
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0006629 lipid metabolic process biological_process
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0060729 intestinal epithelial structure maintenance biological_process
GO:0044255 cellular lipid metabolic process biological_process
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0008654 phospholipid biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0072576 liver morphogenesis biological_process
GO:0010842 retina layer formation biological_process
GO:0071788 endoplasmic reticulum tubular network maintenance biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003881 CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko00564 Glycerophospholipid metabolism
ko04070 Phosphatidylinositol signaling system

ZFIN:

id description
ZDB-GENE-040426-2536 Predicted to enable CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity. Acts upstream of or within several processes, including camera-type eye development; endoplasmic reticulum tubular network maintenance; and intestinal epithelial structure maintenance. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in brain; digestive system; eye; and fin. Used to study fatty liver disease. Orthologous to human CDIPT (CDP-diacylglycerol--inositol 3-phosphatidyltransferase).

Ensembl:

ensembl_id ENSDARG00000070686

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051275 True 1563 mRNA 0.44 6 21125293 21137362

Neighbor

gene id symbol gene type direction distance location
XLOC_026292 maza coding downstream 6324 21096027 ~ 21118969 (-)
XLOC_026291 nlk1 coding downstream 30768 21066315 ~ 21094525 (-)
XLOC_026290 tlcd3ba coding downstream 62515 21044154 ~ 21062778 (-)
XLOC_026289 rundc3aa coding downstream 87453 21018053 ~ 21037840 (-)
XLOC_026288 fam117aa coding downstream 114314 20983395 ~ 21010979 (-)
XLOC_026294 taok2a coding upstream 1178 21138540 ~ 21185016 (-)
XLOC_026295 CR387996.1 coding upstream 64066 21201428 ~ 21206946 (-)
XLOC_026296 tcap coding upstream 103232 21240594 ~ 21242460 (-)
XLOC_026297 syngr1a coding upstream 114265 21251627 ~ 21280373 (-)
XLOC_026298 fam171a2a coding upstream 143296 21280658 ~ 21348478 (-)
XLOC_026285 NA non-coding downstream 209583 20901066 ~ 20915710 (-)
XLOC_026283 NA non-coding downstream 723569 20130274 ~ 20401724 (-)
XLOC_026277 CR855865.1 non-coding downstream 1132830 19986341 ~ 19992463 (-)
XLOC_026276 NA non-coding downstream 1151673 19971681 ~ 19973620 (-)
XLOC_026274 BX572620.1 non-coding downstream 1304486 19813248 ~ 19820807 (-)
XLOC_026301 CR790381.1 non-coding upstream 479558 21616920 ~ 21617040 (-)
XLOC_026303 NA non-coding upstream 1015245 22152607 ~ 22155523 (-)
XLOC_026308 NA non-coding upstream 1271428 22408790 ~ 22421923 (-)
XLOC_026310 NA non-coding upstream 1902146 23039508 ~ 23069636 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_03331693_03336338 CDIPT coding CI01000034 null 3331693 ~ 3337116 (+)