G721845


Basic Information

Item Value
gene id G721845
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53496324 ~ 53497920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU820082
CCTAGCTAGCATTAGATGGTTAATCCAGAGATttttacctttgcctcgatttcGCAGTTTCaatccagatcatcatggcatttgtagtccTTTATGATAGCCATGAtagtaaatatatatttataaatgtcactttgtccgagagagatttacatggttaatCAAATGTCATACCAGGGTAAGCCCCACAGAAACACAGGCCCTTTATTTGGAGTGTTTccaaaatcccctatgggaaaaatgaatggtggagaaacgattggaaccatttccctgtttgaccactaggatTTATTGGTATTTTAACACATACTGTGGTACtccataccccataatgtcaacgtggaattttgtttgtagaaaATATTAGAAATTATTGCAAAATTAAAAGCcgaaatgtcttgaatcaataaATATTTAACCCTTTTgttttggcaagcctaaataagttaaggaataaaaatgtgcttaacaaatcgcaTAATAAGTTGCACGGACTCATTccatgttcaataatagtggttgaCATGATAATGGAGTAACTACCCAatctctctaccccacacatacagataattgtaagggcCCTCAATCGAGGAGTGAATTATAAGCACAGATTCAAGGGatgtttttcaatgcctcgcaaagggcactgattggtagatgtgtgtatatatatatttttaaagaagacactgaatatccctttgagcatggggtGAAGATATTAATTAGGCTctggatggtgcatcaatacacccagtcagttACTCcgcaatactaacctaactgacagagtggATAGAAGGAAGCCTggacagaatacaaatattccaaaacatgcatcctgtttgcaataatactgcaaaaaatgtagcaaagaaattaactttttgtcctaaatacaaagcaTTACATTAGGGGCAAATCCAattaccacttcatattttcaagcatggtggtggctgcatcacattatgggtatgcttgtcattggcaaggactagggagttttgggGGGATAAAAGTAAGAGAAATACATCTATAAGCAAAGggaaaattctagaggaaaacttggcagacaaattcaccttttagcaggacaatacctcaaacacaaggccaaatctatactAGAGTTGCTTAACAAGATATATTTGAATGCTtctgtggcctagttacagttttgacttaaatcgtcttgaaaatctatgacaagactttaaaatagttgtctAGAGATGATCAACTATACacttgacagagattgaagattttgaaaaagaataatgggcaaatattgtacaatccaagtgtgcaaagctcttagaaacttaACCAAAAAAAGACAGATGTAGAAGCAACTTTGGCGGCgattacaaagtattgactcagggttgtgaatacttatgtaaatgagatatttatgtattttatttgaaataaatgtgatacaataaaaaaaaaaaaatgtaattattgtgtgtagatgggtgagaaaatccattttgaattcaggctgtaacagaatGTGGCATAAGtcaaggggcatgaatactttctgaaggcactgtatatatacagtggggagaacaag

Function

NR:

description
transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU820082 True 1597 lncRNA 0.36 1 53496324 53497920

Neighbor

gene id symbol gene type direction distance location
LOC110530110 LOC106569025 coding upstream 41291 53452148 ~ 53455033 (+)
LOC110530108 LOC106568973 coding upstream 160271 53325588 ~ 53336053 (+)
LOC118965525 NA coding upstream 215982 53258440 ~ 53280342 (+)
gng12a gbg12 coding upstream 246765 53191105 ~ 53251843 (+)
wls LOC106568975 coding upstream 314845 53153881 ~ 53181479 (+)
mrpl34 mrpl34 coding downstream 172428 53670348 ~ 53674103 (+)
LOC110530115 LOC106568965 coding downstream 176560 53674480 ~ 53680005 (+)
LOC110530118 LOC106568961 coding downstream 246608 53744528 ~ 53767156 (+)
rps28 NA coding downstream 428098 53926018 ~ 53927959 (+)
LOC110530122 LOC106568957 coding downstream 457283 53955203 ~ 53962940 (+)
G721846 NA non-coding upstream 93 53495805 ~ 53496231 (+)
G721843 NA non-coding upstream 1180 53494782 ~ 53495144 (+)
G721833 NA non-coding upstream 9088 53486984 ~ 53487236 (+)
G721790 NA non-coding upstream 33662 53462423 ~ 53462662 (+)
G721751 NA non-coding upstream 61451 53434644 ~ 53434873 (+)
G721844 NA non-coding downstream 1540 53499460 ~ 53499760 (+)
G721913 NA non-coding downstream 119054 53616974 ~ 53617219 (+)
G721928 NA non-coding downstream 132986 53630906 ~ 53631386 (+)
G721689 LOC106583873 other upstream 118619 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 2855158 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 3102488 50384296 ~ 50397007 (+)
LOC118965615 NA other upstream 3642132 49853027 ~ 49854435 (+)
G716993 LOC100136012 other upstream 3949239 49546212 ~ 49547085 (+)
LOC118965528 LOC106568937 other downstream 1126254 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 1636110 55120291 ~ 55136638 (+)
LOC110530939 LOC106568914 other downstream 1961776 55457870 ~ 55461071 (+)

Expression


Co-expression Network