G722037


Basic Information

Item Value
gene id G722037
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53816405 ~ 53870740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU820289
GCTTTTATTTTTGGTGATGACAGATGAAGGAGTTAAAtctcaaacatacaaggagggtAACCCCGGTATGCTTGGAACAGGTGAGAGCACAATGGAGTAGCCCTCCAATCATCTTGAAGGTGCAACACTGATTTAAAGAGAGACTGTACGTAATGGAGTGATATCCCTCAGTTGGAGAggatggttagagtgttggggagggggggggggggggggggggcagagaagaGTCATGCTTGATTAAATCAAGtttttttaaaaaaagaaagaaagaagaagatTCACGCTTGATTAAGTCCAATTGACATCAACCTGAACATGTTATTAAAccaagagctctctctctctggacagcCTGACCGCTGGCGGACGCTTACAGGTACAAACTTGGTCAACTGGTCGGAGGAAGTCAGACTACAACGTCTAACAGACTTGCTGACATGGTTTTGTTCTCCTTACTAAAGCCATATCGTAATACAGTGTTCTCTTGAGTGATaatgtaaaaatatttttttttaaatgggagatCCATGACCTTTTTGAAGGAGGTCAAGGTAATGAGTATATTGGACACCTTGGTACTGTGAACCAATTTACTGTCTATAACCATCCAAGTATTTATTTAGTACttgtttatatatacagtaccagtcgaaagtttggacacacctactcattcaagggtttttattgatttttactattttctacattgtagaacattagaagatatcaaaactatgaaataacacatatggaatcatgtagcaaccaaaacaTCAAAACGTATTTTAGATTGTTcgaagtatccaccctttgccttgatgacagctttgcacactcttggcattctctcaaccagcttcatgaggaatgcttttccaacagtcttgaaagagttcccacatatgctgagcacttgttggttgcttttccttcactctgcaattcaactcatcccaaaccatctcaattgggttgtggtTGGGTgaaggccaggtaatctgatgcagcactccattactctccttcctcgtgaaatagcccttacataccctggaggtgtgttttggatcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccagatgggacggcgtatcgctgctgaatgctgtggtagccatgctggtaaagtgtgccttgaattctagatacatcacagacagtgtcaccagcaaagcactcccacaccatcacacatgcagagatcatccattcacctactctgcgtctcacaaagacacggcggttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagattttcactgaTATAATGTCTGTTGCTCGTgttccttggcccaagcaagtctcttcttcttattggtgcccttttgtagtggtttccttgcagtaATATTGGGGATCCCGAGTACCGCAGtggtataaggcactgcatcagtgcatcagtgcaagaggcatcactgcagtccctCGTTCGAAACCAGGCTGCATCATAtcctgccgtgattgggagtcccatagggcggcacacaattggcccagtgtcgtccgggtttggccggggtaggacgtcattgtaaataagaatttgttcttaactgacttgcctggttaaataatggtaaaaaaataaaaaataattgacCATAAATGATCTGAACAGGTGATGTCGAAATGTGtatcttacttgaactctgtgaagcatttatttgggctgcaatctgaggtgcaggtaacttaaacttatcctctgcagcagagatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgcc
>TU820291
GCTTGATTAAGTCCAATTGACATCAACCTGAACATGTTATTAAAccaagagctctctctctctggacagcCTGACCGCTGGCGGACGCTTACAGGTACAAACTTGGTCAACTGGTCGGAGGAAGTCAGACTACAACGTCTAACAGACTTGCTGACATGGTTTTGTTCTCCTTACTAAAGCCATATCGTAATACAGTGTTCTCTTGAGTGATaatgtaaaaatatttttttttaaatgggagatCCATGACCTTTTTGAAGGAGGTCAAGGTAATGAGTATATTGGACACCTTGGTACTGTGAACCAATTTACTGTCTATAACCATCCAAGTATTTATTTAGTACttgtttatatatacagtaccagtcgaaagtttggacacacctactcattcaagggtttttattgatttttactattttctacattgtagaacattagaagatatcaaaactatgaaataacacatatggaatcatgtagcaaccaaaacaTCAAAACGTATTTTAGATTGTTcgaagtatccaccctttgccttgatgacagctttgcacactcttggcattctctcaaccagcttcatgaggaatgcttttccaacagtcttgaaagagttcccacatatgctgagcacttgttggttgcttttccttcactctgcaattcaactcatcccaaaccatctcaattgggttgtggtTGGGTgaaggccaggtaatctgatgcagcactccattactctccttcctcgtgaaatagcccttacataccctggaggtgtgttttggatcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccagatgggacggcgtatcgctgctgaatgctgtggtagccatgctggtaaagtgtgccttgaattctagatacatcacagacagtgtcaccagcaaagcactcccacaccatcacacatgcagagatcatccattcacctactctgcgtctcacaaagacacggcggttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagattttcactgaTATAATGTCTGTTGCTCGTgttccttggcccaagcaagtctcttcttcttattggtgcccttttgtagtggtttccttgcagtaATATTGGGGATCCCGAGTACCGCAGtggtataaggcactgcatcagtgcatcagtgcaagaggcatcactgcagtccctCGTTCGAAACCAGGCTGCATCATAtcctgccgtgattgggagtcccatagggcggcacacaattggcccagtgtcgtccgggtttggccggggtaggacgtcattgtaaataagaatttgttcttaactgacttgcctggttaaataatggtaaaaaaataaaaaataattgacCATAAATGATCTGAACAGGTGATGTCGAAATGTGtatcttacttgaactctgtgaagcatttatttgggctgcaatctgaggtgcaggtaacttaaacttatcctctgcagcagagatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgcc
>TU820288
ccagcttcatgaggaatgcttttccaacagtcttgaaagagttcccacatatgctgagcacttgttggttgcttttccttcactctgcaattcaactcatcccaaaccatctcaattgggttgtggtTGGGTgaaggccaggtaatctgatgcagcactccattactctccttcctcgtgaaatagcccttacataccctggaggtgtgttttggatcattgtcctgttgaaaaacaaatgatagtcccactaagcgcaaaccagatgggacggcgtatcgctgctgaatgctgtggtagccatgctggtaaagtgtgccttgaattctagatacatcacagacagtgtcaccagcaaagcactcccacaccatcacacatgcagagatcatccattcacctactctgcgtctcacaaagacacggcggttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagattttcactgaTATAATGTCTGTTGCTCGTgttccttggcccaagcaagtctcttcttcttattggtgcccttttgtagtggtttccttgcagtaATATTGGGGATCCCGAGTACCGCAGtggtataaggcactgcatcagtgcatcagtgcaagaggcatcactgcagtccctCGTTCGAAACCAGGCTGCATCATAtcctgccgtgattgggagtcccatagggcggcacacaattggcccagtgtcgtccgggtttggccggggtaggacgtcattgtaaataagaatttgttcttaactgacttgcctggttaaataatggtaaaaaaataaaaaataattgacCATAAATGATCTGAACAGGTGATGTCGAAATGTGtatcttacttgaactctgtgaagcatttatttgggctgcaatctgaggtgcaggtaacttaaacttatcctctgcagcagagatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU820289 False 1850 lncRNA 0.43 2 53816405 53870740
TU820291 False 1565 lncRNA 0.43 2 53816690 53870740
TU820288 True 992 lncRNA 0.46 2 53817263 53870740

Neighbor

gene id symbol gene type direction distance location
LOC110530118 LOC106568961 coding upstream 49249 53744528 ~ 53767156 (+)
LOC110530115 LOC106568965 coding upstream 136400 53674480 ~ 53680005 (+)
mrpl34 mrpl34 coding upstream 142302 53670348 ~ 53674103 (+)
LOC110530110 LOC106569025 coding upstream 361372 53452148 ~ 53455033 (+)
LOC110530108 LOC106568973 coding upstream 480352 53325588 ~ 53336053 (+)
rps28 NA coding downstream 55278 53926018 ~ 53927959 (+)
LOC110530122 LOC106568957 coding downstream 84463 53955203 ~ 53962940 (+)
LOC110530127 NA coding downstream 274370 54145110 ~ 54155237 (+)
LOC110530128 LOC106568951 coding downstream 285368 54140181 ~ 54207822 (+)
LOC110530129 LOC106568949 coding downstream 341166 54211906 ~ 54270087 (+)
G722016 NA non-coding upstream 28119 53787430 ~ 53788286 (+)
G722003 NA non-coding upstream 46351 53769754 ~ 53770054 (+)
G721928 NA non-coding upstream 185019 53630906 ~ 53631386 (+)
G722098 NA non-coding downstream 34191 53904931 ~ 53905171 (+)
G722083 NA non-coding downstream 54622 53925362 ~ 53925640 (+)
G722120 NA non-coding downstream 77986 53948726 ~ 53949043 (+)
G722129 NA non-coding downstream 94367 53965107 ~ 53965395 (+)
G722146 NA non-coding downstream 122324 53993064 ~ 54003115 (+)
G721689 LOC106583873 other upstream 438700 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 3175239 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 3422569 50384296 ~ 50397007 (+)
LOC118965615 NA other upstream 3962213 49853027 ~ 49854435 (+)
LOC118965528 LOC106568937 other downstream 753434 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 1263290 55120291 ~ 55136638 (+)
LOC110530939 LOC106568914 other downstream 1588956 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 1839500 55710156 ~ 55724271 (+)

Expression


Co-expression Network