XLOC_026297 (syngr1a)


Basic Information

Item Value
gene id XLOC_026297
gene name syngr1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21251627 ~ 21280373 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051280
GACAGCATAATGCGCGCTCTCGTGTTCCCCCGGATGCGTGTTTACTCAGTCTCCTCTCTCCACCCTTGAAATGAGAGAGGTACGAAGTGGAAGGGACATCGTTTTGCAAGAATATTTCCACCAACGGATAGCCAGGGACGAAGCGCGGAGAGTCAAGGTGTAGCTCAAGGATACATTGATTCCACGCCAAGGTCAATTATCcctctctctctaaaaaaaactTCAGACACGGAGAAATCACGAACCTGTGAGGATGGATCAGGCATACGGGGCTGGAAAGGCAGGCGGCACCTTCGATCCAATTACTTTCTTTCAACAACCGCAGACAATTCTGCGAATAGTATCTTGGATCTTTTCTATCGTGATCTTTGGATGTATTGCTAACGAGGGCTATGTGAACCGTCCAGACGAGGTGGAGGAGTTTTGTATCTTTAACCGCAACCAGAACGCCTGTAACTATGCTGTGGGAATGGGAGCTCTGGACTTTCTCTGCTGTGCTGCTTTTCTGGCACTGGACATCTACTTTCCTCAGATTAGCAGCGTTAAAGACCGCAAGAAGGCTGTGTTAGCTGATATTGGTGTTTCAGccttCTGGTCTTTCGTGTGGTTTGTGGGCTTCTGTTTTCTGGCCAATCAGTGGCAAGTGGCTAACCCAGAAGATAACCCTCTCAAAGAGGGAGCAGACGCTGCCAGAGCGGCCATCACCTTCGCCTTCTTCTCCATATTTACTTGGGCTGGTCAAGCTTTCTTTGGATTCCAGAGGTACAAGTTAGGTTCGAGCTCGTCTCTCTTCTCTCAGGACTATACTGATCCCAGCCAGGATCCCGCAGCAGCGCCCTCTGAAGGAACAGAGTACACCGGGTACAACGCAGACATGGAGGCTAACTATGACGGCTCTGGTGGATACCAGAACCAAGATTACTAAGGTTGAGTATTAGGATACACACAACAGCCTTAACCAGCTAGGCTGATCGGGTTACATGGGGGAAAATAATGTTTGTCTAAAAAAGGACTTATTTTGGGCATTTGGGGGTGGAATATGGGGACCAAAGCAAACTGAGGGGAATTCAGGGGTTTGTTTGGTGCTATACTTACCCCTTTTGGAGTTTATTATGGGGTTTGGAGGTATTTCTGTTCTTCTGGTGACAATGTATGATTAATGTCTATcaatatgatatgatatttgCCGTGGCACAAGATCTGTACACTAGATTTTGTGCCACTAGGAATTTTTGCCTTCAGTTTCAGGGTTATTTTGGGCTTGGGGAGGATTTAGGTGATTGGTCCATCCAGAGTAAACACTTCCAAGTGTCTGTTAGAGAAAACAGGATTAGTTTAGAACAAATTATCTAGACTTGTGAAAAAA

Function

symbol description
syngr1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Is expressed in nervous system; neural crest; optic vesicle; and pigment cell. Orthologous to human SYNGR1 (synaptogyrin 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031594 neuromuscular junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-169 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuromuscular junction and synaptic vesicle membrane. Is expressed in nervous system; neural crest; optic vesicle; and pigment cell. Orthologous to human SYNGR1 (synaptogyrin 1).

Ensembl:

ensembl_id ENSDARG00000002564

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051280 True 1366 mRNA 0.46 4 21251627 21280373

Neighbor

gene id symbol gene type direction distance location
XLOC_026296 tcap coding downstream 9167 21240594 ~ 21242460 (-)
XLOC_026295 CR387996.1 coding downstream 44681 21201428 ~ 21206946 (-)
XLOC_026294 taok2a coding downstream 66611 21138540 ~ 21185016 (-)
XLOC_026293 cdipt coding downstream 114265 21125293 ~ 21137362 (-)
XLOC_026292 maza coding downstream 132658 21096027 ~ 21118969 (-)
XLOC_026298 fam171a2a coding upstream 285 21280658 ~ 21348478 (-)
XLOC_026299 itga2b coding upstream 70136 21350509 ~ 21382491 (-)
XLOC_026300 CT573446.1 coding upstream 104878 21385251 ~ 21402279 (-)
XLOC_026301 CR790381.1 coding upstream 336547 21616920 ~ 21617040 (-)
XLOC_026302 BX547992.1 coding upstream 718633 21999006 ~ 22000986 (-)
XLOC_026285 NA non-coding downstream 335917 20901066 ~ 20915710 (-)
XLOC_026283 NA non-coding downstream 849903 20130274 ~ 20401724 (-)
XLOC_026277 CR855865.1 non-coding downstream 1259164 19986341 ~ 19992463 (-)
XLOC_026276 NA non-coding downstream 1278007 19971681 ~ 19973620 (-)
XLOC_026303 NA non-coding upstream 872234 22152607 ~ 22155523 (-)
XLOC_026308 NA non-coding upstream 1128417 22408790 ~ 22421923 (-)
XLOC_026310 NA non-coding upstream 1759135 23039508 ~ 23069636 (-)
XLOC_026311 NA non-coding upstream 1939897 23220270 ~ 23240721 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_03214677_03229150 SYNGR1, SYNGR1A coding CI01000034 null 3214215 ~ 3229868 (+)