G722146


Basic Information

Item Value
gene id G722146
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53993064 ~ 54003115 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU820414
ttttttttttttttTGTGTGGGGACTCAAATTTTATTTATACAAAGACCACAGCCATTCTACTTCAGTGGGATGAAACGGGAAGAATGTGTCGCTCCGATACCGGGACGACCGTGCTTGACTGGCTTGTAGGTGATGGAGAACTCCCCCAGtaagtgtccatgattgagtatGTGAGTCCAGCGATCTCCCCCAAACCTCACCTTGATTTCAACCTGGTTGAAGGTCTTGCCGTTGTACACTCCAACCATGGAGCCAACCATCTCAGGCAGGATGACCATGTCCCTGAGGTGAGTCTTCACCACCTCAGGCTTCTCCATGGGGGGAGCCTCCTTCTTGGCCTTACGCAGACGCTTCAGGAGGGACTGCTGCTTGCGGCGAAGGCCACGGTTGAGCCTCCTCCTCTGGCGGGCGCAGTACAACTGCATTAACTGCTcactggaagggggggggggggggggggtgtatggtcATAATTCCATCCGGGACATTTTCAGATGCACATTAAAACATCAGCTTCAAATAGCAGACTGAAGACTTACAGGGGAGTTTAATGAAAAATTACAATGAATCCTGACTGCCAGTCAGTGTTACTTCACTAATTGTACTACATGTTAACCCCAAACTGGTTGGCCTTAAGTGAACATATTTAGTCAAAGCCCAATTCATTACATAATGATTTGTATGAAATGCAAAATGTAGAAAACAAATGACGGAACACAGCACATTCATAAATGTACCCAACTTTCGAAAGAGTGC
>TU820415
ttttttttttttttTGTGGGGACTCAAATTTTATTTATACAAAGACCACAGCCATTCTACTTCAGTGGGATGAAACGGGAAGAATGTGTCGCTCCGATACCGGGACGACCGTGCTTGACTGGCTTGTAGGTGATGGAGAACTCCCCCAGGTAGTGGCCACACATCTCAGGCAGGATGACCATGTCCCTGAGGTGAGTCTTCACCACCTCAGGCTTCTCCATGGGGGGAGCCTCCTTCTTGGCCTTACGCAGACGCTTCAGGAGGGACTGCTGCTTGCGGCGAAGGCCACGGTTGAGCCTCCTCCTCTGGCGGGCGCAGTACAACTGCATTAACTGCTcactggaagggggggggggggggggggtgtatggtcATAATTCCATCCGGGACTAGGACATGTCAAGAAGCTGGTCCAGGTCCACACCTCTGTAGGTGAACTTCCTGAAGGTACGCTTCTTCTTGATCTCAACTTCCGCCTAGGAAGCAACGCAAATTACTTCAACGCAGTGGATATCGTGGTCCAACGACCTCAGCTATATGTTGAACAAGGCATTTGCTGTGAAATACTAAAGAACATTCCTAGCGACTGTGTTAGTCGGGATTTCGTGCCGAACTCATGTCTCTAAAAGAGAACGTGACTCGGTGAAAAGCATTGGCGCTGCAGGCTACCCTGTGTCATTAGCATACATCCCAAGCTTTATGGTGCGCCAATCTTGTTCCATCCTAAAATTTAGCAATGTACCGATTGATAAATGGTGATGAACCGAAATATATGATTTATTAAATAGAAGGTTTTATCATTTTGCTGAGATGGAGATAGATTGTCATATTCGGGTACTTGTAAATTTGGTCACCTACCATCTTGCCTGATGTTCCGGGGAAAA

Function

NR:

description
40S ribosomal protein S15

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU820414 False 758 lncRNA 0.47 3 53993064 54002460
TU820415 True 884 lncRNA 0.48 4 53993064 54003115

Neighbor

gene id symbol gene type direction distance location
LOC110530122 LOC106568957 coding upstream 30124 53955203 ~ 53962940 (+)
rps28 NA coding upstream 65105 53926018 ~ 53927959 (+)
LOC110530118 LOC106568961 coding upstream 225908 53744528 ~ 53767156 (+)
LOC110530115 LOC106568965 coding upstream 313059 53674480 ~ 53680005 (+)
mrpl34 mrpl34 coding upstream 318961 53670348 ~ 53674103 (+)
LOC110530127 NA coding downstream 141995 54145110 ~ 54155237 (+)
LOC110530128 LOC106568951 coding downstream 152993 54140181 ~ 54207822 (+)
LOC110530129 LOC106568949 coding downstream 208791 54211906 ~ 54270087 (+)
LOC110530130 LOC106568950 coding downstream 270081 54273196 ~ 54276106 (+)
mpv17l2 LOC106568948 coding downstream 274798 54277913 ~ 54280498 (+)
G722129 NA non-coding upstream 27669 53965107 ~ 53965395 (+)
G722120 NA non-coding upstream 44021 53948726 ~ 53949043 (+)
G722083 NA non-coding upstream 67424 53925362 ~ 53925640 (+)
G722098 NA non-coding upstream 87893 53904931 ~ 53905171 (+)
G722037 NA non-coding upstream 122324 53816405 ~ 53870740 (+)
G722164 NA non-coding downstream 28426 54031541 ~ 54031901 (+)
G722176 NA non-coding downstream 54569 54057684 ~ 54062728 (+)
G722271 NA non-coding downstream 256268 54259383 ~ 54260099 (+)
G721689 LOC106583873 other upstream 615359 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 3351898 50607401 ~ 50641183 (+)
LOC110530019 LOC106568718 other upstream 3599228 50384296 ~ 50397007 (+)
LOC118965528 LOC106568937 other downstream 621059 54557953 ~ 54670115 (+)
LOC110530153 LOC106568927 other downstream 1130915 55120291 ~ 55136638 (+)
LOC110530939 LOC106568914 other downstream 1456581 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 1707125 55710156 ~ 55724271 (+)
G725573 NA other downstream 2980455 56983570 ~ 56984285 (+)

Expression


Co-expression Network