XLOC_026298 (fam171a2a)


Basic Information

Item Value
gene id XLOC_026298
gene name fam171a2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 21280658 ~ 21348478 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051281
GTACATCGCTTCAGGATCCCCCCTCCCATCTGGGACGGCAGGACTGAAAGCCGCGGAGCAGCAGTGCTCGGGAAGGGAGTGGGCACCAGCGGCAACCGCACTTCTGAACAGTCAGTCAATGCCATCCCGCAAAGAAACATGGATGAACTGCTACTTCAGGAGGATTTGACGATGCCGCTGTAAAAATGCGTCCACAGCGCGCCTCCCGCTTCTTTGCGCTTTTTCTTTTCCTCTGTAGTGCTTGGAGGTCGCTGGCGAAATCACTGCCGAGCCCGGGACCAGTTGAAGTCCTGATTAAAGTCCAGGTCTTCGACAACAGTGACTTGTCACCTCTTAGGGAATCCACAGTCCAAGTGTGTGGAAACCAAACAATCCTAGCATCCAACCTTGTGGGAGAAGATGGGATTGTCACACTTACATTCTTGTACCGGCCAGGAACATGGGTCATCGTCACTGCATCAAAGCATGGATTTGTCACGAACTCCGCACCATGGCATGCCAGCCGTGTCCCATTGTACGCCTCCGTAAGTCTCTACCTACTTCCTCAGAGACCAGCAACTCTCCTGCTGTATGATGATGTGGTGCAGTTACTGTTGGGTTCAccagGGTCCCGGAGACAGCCATGGGTACAGCTTCAGAGAAGAGCCATCCAACCACCCCTAAACAACTCCCAAATCACCCTCTCTGCAATGCTGACCTCTTCCCGCAGTCAGTATGAGCTTGGAGGCTTTCCCTACCCACTCGCCATGGACAACAATTCAACAGGAACCAACAGTAGCTGGGTGGAGCTAACTGCACTAGCTGCAATGTGCGCTCAGCTCACTGGGCCCAACGGCACTGAGGTTCAGGTGTCAGAACCCATTCACATCTCCATCCCACTTCCTTCTGACTCTCCTCTTAAGACTGCCACCAGTGTCCCAGTCTGGAGGTTTGAGGACAAGACAGGTCTATGGGTCAGAAGTGGTGCAGGATACATTAAAAAAGAGGACACTCAAATGACATGGAGTTTTGTGGCTCCAAAGTTAGGATACTGGCTTGCAGCATTTCCGTCAACCTCAGGATCTGGTCTGAACACTTCTGGACTAAGAGACATCACTACCTACCACACCATTTTCCTGCTGGCGATTCTGGGTGCCATGGCACTGCTAGTGCTTATTCTTTTGTGTTTGCTACTGTACTACTGCAGGAGGCGATGTTTAAAACCTCGGCAGCATCGGCGTAAAATGCACCTATCATCCACTCTTGAGAGCTCAAAGAGAGACCAGGGCACATCCACTTCTCACCTCAACCTGATCAGTGGTGGACACATGGAGACAGCCTCCTCAACTGGTGATCTCAACAGCTCTCGAGATGACTTCTTTAAACATGGTCCCACCCAAAGACAACACAACTCCAGGACGAATGCTGACTCAAAACGAGGAGAGAGCTTCCCATTGAAAGCTACACGCTCTTCAAACACAGGAACTCGAGATCTGCTTCTTCAGGATGACTACGGCAAAGGTTACAGCTCTGCTGAGGACTCAGATGATCGCAAATACAATCACCATAATGCTAAAGACAACCAGGGCTATTCATCAGACCCACCATCTCCACCTCCACTTTTGCCACCATTTGCCGGCCACTACCAGGATCTCAATCGGGACAGCAAGCCTCCAGAGTATTATGCATCAGCAGGGGATCACCTCAATCGGCCCTCTTCGGTCAATACCCAGCCTGGCCAACTGATCTTCTGTCACTCAATGGAGCAGATGAAAGAGAGCATGTACCACAGCATGGTACCCACATTGGTCATCCCTGCACATTACATGCATCTGTCCTCTGACTTGACAGCTGTGGAGCAGGCAATGGAACGGCAACAACAGCTGCAGCACGATATGGAGGGCATCCAGGTTAGTATGACTCTACCAAGGCAGCAGAATCAAAAGCAACAACAGCAGCAGGCCAGGGCTGATAATGAAGAGGAAGAGTCAGGCAAACAAGCAGATGGATCTTCGGAGGAGAACTGGGGATCAGACCAATCCAGTGCCCCAGTACGTATTCCAGTGCTTTTCAATGATTCAACCATTGCTCAAATGAATGGAGAGCTGCAAGCGATGACAGAGAAGAAGTTGCTGGAGCTTGGGGTGAAGCCACACCCTCGTGCCTGGTTCGTTTCCCTTGATGGCCGTTCAAACTCTCTTGTTAGACACTCCTACATTGAGCTGAGCAATGAAGCCTTGCGTCCACCCATGGGCGCCTGCAATCAAACACTAGACCAGCGTACTGAAGCAATCCCCACGAATTCAGGGAAACCTTCCCACCGAAAATTAAAAGAGGATGGCAAGGTAAAGGAGGGAGGTGAAAGAAAAGCTCATGGTAAAATTTATTCCAAGCTTCCCGTTATTGAAACTCCAGACTCAAGCAGCGAGAGCCATTCAGCCATGTACTCACCTGAGGAGAACTCAACAGCGCCGCTACTTGATGAAACTGCAGAGGTGTCCAAAGGTGGGACGTTCCCGCGTAAAGGCCGCAGCCGAGACAACAGCACCCGTAGTAGTGCCAGTGAGGTCCACCGAGACTCAGTCACCAGTCCTGATGACGATAATGATGACAAAGATGATGACGGAGAGAATAAGAAGAGCCCCTGGCAAAAGCGTGAAGAAAGACCCCTCATGGTGTTTAATGTCAAGTAATGCTGCCCAGGACTGGTTAGGGCATCGTCTTGGCTGTACCCTTCTTTTGCATAGATACTCACTAGTGATGAGGTGTGAGGATACAGAGCTGGAAGAAAGTCTGATGAAAAGCACAATATGAGATATGGCACTTACTTGAGTGATCTGTTTCAACCATCAAGACTAGGTACAAAGAATAAGCACTGAATGCCACCTGCAAAGAAGCATCTGAAGTCGTCACACCCTCTTAGATATCCTTCAGACAGTTTATACACCTGATGTTGTTCTGGCAGTTCATCAGGTCAAAGGGAGTTGAACTGAATCTCAAGATGTTGTCTTGCTTTCTTTGAGGGTTACCCAGTTTTTGTAAGAATGACCATgagccattttaaaactaacttTGGGAAGCAATCCATAAGCCTTAAAGAGCTTTTTCCTTTACTTaagaaatataaatgaatataaatttgaTATGAATGAAACAGAGGGCTGTTGTAAGATTTCCAAGATAagtttagattacttttattctAGTGGTTTactcaaatgttttatttgtttatatgagTAATTAGAGCTGAACCAATAAGATGTGTACATTTCACAAACAGGAGTGAAATGGTTGctgaataaatgtgtttattcttTGTGACTGATCCTAGTGGTTGACACACAATGacactgtattttgtactgttgGTAAAAAGTTCCCCTTTTTTACTTATCTAAAACCAGTGTTGCCAttttataaaatatcttaatCAAACTGTTTGGACTAGGAAAGCTGCTCTTAGATAAGAATAAAAGGTTCTGCTTGCACGCAGAACACATTTTGTACTCTGAATAAGCCTTTCCTGCTGGGTCAGTCCACCAATAGGAATTATATTTTGAGGGACTTACCTTGGACGCctgtgaaaatgttttctcaCTAATCTGTGCTGCCGTGCATCAGGACTTTTGCCATACTTCAGAACCACTTCAACTCAACTCTAACTGTGGAAGTACATTTTTGAACTTTTATGGACTTCTTGTGTGTGACTGAAAATACAGATTGTGCTTTAAATGGATGTGCATGGATGAATttactcaaaacaaaacaaaaaatgtaccgagtatttttttaaaaacaagtattGCTTGATTAAGCGCTCTTACTAAACTCTGTGAACCACTTATTTGTAAATaacacattagtaaatttacactctCACTTGAGTCTTATGATGTCTAATTTTTAGTTAACGTTGGCCTCTGGTTACCAGCAACGATGATGTCATGTGATTTCTTTAGTGAGCTACATCATTATGGACTTTAAAGGAGTCAAATTACATTAgaatatgttatattatttatagtatattAATTAGGATGTCACAGTGCTGCAGTGgggatcgcctcacagtaagaaggttgctggttcgagcctcagctgggtcagttggcatttctgtttgcatgttctccctgtgtttgtgtggatttcctccgggtgctcaggtttcccccacaagtccaaacacatgcactataggtgaattaggtaagctaaattttccgtagtatatgtgtgtgaatggaagtgtatgggtgtttcccagtgatgggttgcagttggaaagggcatccgctgcataaaacaagtatgtggcgacccctaattaataaagggactaagccgaaataaatgaatgaaaaaatacattaattaatattatattatatattacatgaGCACATTTAAATGTGCACATCACCACGTCTAAAACTGAAATTAACCGAGCAGTTCGGAGAGCTTtcttattttttgctttgatttaacaaaataaatatttttattaaa
>TCONS_00051283
CCAATAACTGGTTCTTATTCAGAACAGCGTGTCATACAGGGCAACCATTTTAGTCCAATTTGTGAAATACTTATGACTTGGGCCTTTGTTATAAACAGACTCAATAAATTCTTCATGATTATTCCATCCTTACTCACTATAGCAGTAAAGTTCAATATCGACTTATTTAAATCTCTGTTTTCTAGGGTCCCGGAGACAGCCATGGGTACAGCTTCAGAGAAGAGCCATCCAACCACCCCTAAACAACTCCCAAATCACCCTCTCTGCAATGCTGACCTCTTCCCGCAGTCAGTATGAGCTTGGAGGCTTTCCCTACCCACTCGCCATGGACAACAATTCAACAGGAACCAACAGTAGCTGGGTGGAGCTAACTGCACTAGCTGCAATGTGCGCTCAGCTCACTGGGCCCAACGGCACTGAGGTTCAGGTGTCAGAACCCATTCACATCTCCATCCCACTTCCTTCTGACTCTCCTCTTAAGACTGCCACCAGTGTCCCAGTCTGGAGGTTTGAGGACAAGACAGGTCTATGGGTCAGAAGTGGTGCAGGATACATTAAAAAAGAGGACACTCAAATGACATGGAGTTTTGTGGCTCCAAAGTTAGGATACTGGCTTGCAGCATTTCCGTCAACCTCAGGATCTGGTCTGAACACTTCTGGACTAAGAGACATCACTACCTACCACACCATTTTCCTGCTGGCGATTCTGGGTGCCATGGCACTGCTAGTGCTTATTCTTTTGTGTTTGCTACTGTACTACTGCAGGAGGCGATGTTTAAAACCTCGGCAGCATCGGCGTAAAATGCACCTATCATCCACTCTTGAGAGCTCAAAGAGAGACCAGGGCACATCCACTTCTCACCTCAACCTGATCAGTGGTGGACACATGGAGACAGCCTCCTCAACTGGTGATCTCAACAGCTCTCGAGATGACTTCTTTAAACATGGTCCCACCCAAAGACAACACAACTCCAGGACGAATGCTGACTCAAAACGAGGAGAGAGCTTCCCATTGAAAGCTACACGCTCTTCAAACACAGGAACTCGAGATCTGCTTCTTCAGGATGACTACGGCAAAGGTTACAGCTCTGCTGAGGACTCAGATGATCGCAAATACAATCACCATAATGCTAAAGACAACCAGGGCTATTCATCAGACCCACCATCTCCACCTCCACTTTTGCCACCATTTGCCGGCCACTACCAGGATCTCAATCGGGACAGCAAGCCTCCAGAGTATTATGCATCAGCAGGGGATCACCTCAATCGGCCCTCTTCGGTCAATACCCAGCCTGGCCAACTGATCTTCTGTCACTCAATGGAGCAGATGAAAGAGAGCATGTACCACAGCATGGTACCCACATTGGTCATCCCTGCACATTACATGCATCTGTCCTCTGACTTGACAGCTGTGGAGCAGGCAATGGAACGGCAACAACAGCTGCAGCACGATATGGAGGGCATCCAGGTTAGTATGACTCTACCAAGGCAGCAGAATCAAAAGCAACAACAGCAGCAGGCCAGGGCTGATAATGAAGAGGAAGAGTCAGGCAAACAAGCAGATGGATCTTCGGAGGAGAACTGGGGATCAGACCAATCCAGTGCCCCAGTACGTATTCCAGTGCTTTTCAATGATTCAACCATTGCTCAAATGAATGGAGAGCTGCAAGCGATGACAGAGAAGAAGTTGCTGGAGCTTGGGGTGAAGCCACACCCTCGTGCCTGGTTCGTTTCCCTTGATGGCCGTTCAAACTCTCTTGTTAGACACTCCTACATTGAGCTGAGCAATGAAGCCTTGCGTCCACCCATGGGCGCCTGCAATCAAACACTAGACCAGCGTACTGAAGCAATCCCCACGAATTCAGGGAAACCTTCCCACCGAAAATTAAAAGAGGATGGCAAGGTAAAGGAGGGAGGTGAAAGAAAAGCTCATGGTAAAATTTATTCCAAGCTTCCCGTTATTGAAACTCCAGACTCAAGCAGCGAGAGCCATTCAGCCATGTACTCACCTGAGGAGAACTCAACAGCGCCGCTACTTGATGAAACTGCAGAGGTGTCCAAAGGTGGGACGTTCCCGCGTAAAGGCCGCAGCCGAGACAACAGCACCCGTAGTAGTGCCAGTGAGGTCCACCGAGACTCAGTCACCAGTCCTGATGACGATAATGATGACAAAGATGATGACGGAGAGAATAAGAAGAGCCCCTGGCAAAAGCGTGAAGAAAGACCCCTCATGGTGTTTAATGTCAAGTAA
>TCONS_00051282
CCAATAACTGGTTCTTATTCAGAACAGCGTGTCATACAGGGCAACCATTTTAGTCCAATTTGTGAAATACTTATGACTTGGGCCTTTGTTATAAACAGACTCAATAAATTCTTCATGATTATTCCATCCTTACTCACTATAGCAGTAAAGTTCAATATCGACTTATTTAAATCTCTGTTTTCTAGGGTCCCGGAGACAGCCATGGGTACAGCTTCAGAGAAGAGCCATCCAACCACCCCTAAACAACTCCCAAATCACCCTCTCTGCAATGCTGACCTCTTCCCGCAGTCAGTATGAGCTTGGAGGCTTTCCCTACCCACTCGCCATGGACAACAATTCAACAGGTGAGTTTACCCAAAAAAATAGGTCTCCTGTCCGTCTGGTCATTACTATTTCACTCCTACGTGCAATCTTTAACCATTGCAAAGAATGGCTTGCAACTATGGCCTCATTTTGTTACTGTCTGTCCTGATTCAGGAACCAACAGTAGCTGGGTGGAGCTAACTGCACTAGCTGCAATGTGCGCTCAGCTCACTGGGCCCAACGGCACTGAGGTTCAGGTGTCAGAACCCATTCACATCTCCATCCCACTTCCTTCTGACTCTCCTCTTAAGACTGCCACCAGTGTCCCAGTCTGGAGGTTTGAGGACAAGACAGGTCTATGGGTCAGAAGTGGTGCAGGATACATTAAAAAAGAGGACACTCAAATGACATGGAGTTTTGTGGCTCCAAAGTTAGGATACTGGCTTGCAGCATTTCCGTCAACCTCAGGATCTGGTCTGAACACTTCTGGACTAAGAGACATCACTACCTACCACACCATTTTCCTGCTGGCGATTCTGGGTGCCATGGCACTGCTAGTGCTTATTCTTTTGTGTTTGCTACTGTACTACTGCAGGAGGCGATGTTTAAAACCTCGGCAGCATCGGCGTAAAATGCACCTATCATCCACTCTTGAGAGCTCAAAGAGAGACCAGGGCACATCCACTTCTCACCTCAACCTGATCAGTGGTGGACACATGGAGACAGCCTCCTCAACTGGTGATCTCAACAGCTCTCGAGATGACTTCTTTAAACATGGTCCCACCCAAAGACAACACAACTCCAGGACGAATGCTGACTCAAAACGAGGAGAGAGCTTCCCATTGAAAGCTACACGCTCTTCAAACACAGGAACTCGAGATCTGCTTCTTCAGGATGACTACGGCAAAGGTTACAGCTCTGCTGAGGACTCAGATGATCGCAAATACAATCACCATAATGCTAAAGACAACCAGGGCTATTCATCAGACCCACCATCTCCACCTCCACTTTTGCCACCATTTGCCGGCCACTACCAGGATCTCAATCGGGACAGCAAGCCTCCAGAGTATTATGCATCAGCAGGGGATCACCTCAATCGGCCCTCTTCGGTCAATACCCAGCCTGGCCAACTGATCTTCTGTCACTCAATGGAGCAGATGAAAGAGAGCATGTACCACAGCATGGTACCCACATTGGTCATCCCTGCACATTACATGCATCTGTCCTCTGACTTGACAGCTGTGGAGCAGGCAATGGAACGGCAACAACAGCTGCAGCACGATATGGAGGGCATCCAGGTTAGTATGACTCTACCAAGGCAGCAGAATCAAAAGCAACAACAGCAGCAGGCCAGGGCTGATAATGAAGAGGAAGAGTCAGGCAAACAAGCAGATGGATCTTCGGAGGAGAACTGGGGATCAGACCAATCCAGTGCCCCAGTACGTATTCCAGTGCTTTTCAATGATTCAACCATTGCTCAAATGAATGGAGAGCTGCAAGCGATGACAGAGAAGAAGTTGCTGGAGCTTGGGGTGAAGCCACACCCTCGTGCCTGGTTCGTTTCCCTTGATGGCCGTTCAAACTCTCTTGTTAGACACTCCTACATTGAGCTGAGCAATGAAGCCTTGCGTCCACCCATGGGCGCCTGCAATCAAACACTAGACCAGCGTACTGAAGCAATCCCCACGAATTCAGGGAAACCTTCCCACCGAAAATTAAAAGAGGATGGCAAGGTAAAGGAGGGAGGTGAAAGAAAAGCTCATGGTAAAATTTATTCCAAGCTTCCCGTTATTGAAACTCCAGACTCAAGCAGCGAGAGCCATTCAGCCATGTACTCACCTGAGGAGAACTCAACAGCGCCGCTACTTGATGAAACTGCAGAGGTGTCCAAAGGTGGGACGTTCCCGCGTAAAGGCCGCAGCCGAGACAACAGCACCCGTAGTAGTGCCAGTGAGGTCCACCGAGACTCAGTCACCAGTCCTGATGACGATAATGATGACAAAGATGATGACGGAGAGAATAAGAAGAGCCCCTGGCAAAAGCGTGAAGAAAGACCCCTCATGGTGTTTAATGTCAAGTAA

Function

symbol description
fam171a2a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM171A2 (family with sequence similarity 171 member A2).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110606-5 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAM171A2 (family with sequence similarity 171 member A2).

Ensembl:

ensembl_id ENSDARG00000075249

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051281 False 4491 mRNA 0.45 8 21280658 21348478
TCONS_00051283 False 2251 mRNA 0.49 5 21282477 21288202
TCONS_00051282 True 2384 mRNA 0.48 4 21282477 21288202

Neighbor

gene id symbol gene type direction distance location
XLOC_026297 syngr1a coding downstream 285 21251627 ~ 21280373 (-)
XLOC_026296 tcap coding downstream 38198 21240594 ~ 21242460 (-)
XLOC_026295 CR387996.1 coding downstream 73712 21201428 ~ 21206946 (-)
XLOC_026294 taok2a coding downstream 95642 21138540 ~ 21185016 (-)
XLOC_026293 cdipt coding downstream 143296 21125293 ~ 21137362 (-)
XLOC_026299 itga2b coding upstream 2031 21350509 ~ 21382491 (-)
XLOC_026300 CT573446.1 coding upstream 36773 21385251 ~ 21402279 (-)
XLOC_026301 CR790381.1 coding upstream 268442 21616920 ~ 21617040 (-)
XLOC_026302 BX547992.1 coding upstream 650528 21999006 ~ 22000986 (-)
XLOC_026303 NA coding upstream 804129 22152607 ~ 22155523 (-)
XLOC_026285 NA non-coding downstream 364948 20901066 ~ 20915710 (-)
XLOC_026283 NA non-coding downstream 878934 20130274 ~ 20401724 (-)
XLOC_026277 CR855865.1 non-coding downstream 1288195 19986341 ~ 19992463 (-)
XLOC_026276 NA non-coding downstream 1307038 19971681 ~ 19973620 (-)
XLOC_026308 NA non-coding upstream 1060312 22408790 ~ 22421923 (-)
XLOC_026310 NA non-coding upstream 1691030 23039508 ~ 23069636 (-)
XLOC_026311 NA non-coding upstream 1871792 23220270 ~ 23240721 (-)

Expression


Co-expression Network