G723112


Basic Information

Item Value
gene id G723112
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 54698863 ~ 54701655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU821504
ATGTACAGAAAGTGCTGCCATTACCACCAAAGAGAAAGAAACCCCAAACatttacaaaacaaaacaaaagtaaTCATATATAAAATAACTGTCTTGAACTGTTTTTAAAGGGTTTAtatgctaaacagtttatttgtaCTCCTCTATGACACACATGGTGAGAATTTCAATTGCCTACTTCTCACGTTCTCGCTAGCCGCCTCCTCAAAatccattggaggagaagGCGAGGACAGAGGATGTGAGGAgtgtgcaattgagattctcccatggTATAAAGATGGGGTGAAACAAGGCAATGGTAGACGCGTCTCACAATGATAACATTACAACCACAGGCGTTATAAGGCCGACGGGGGGAAGAGTTCTAACCACTGCTACAGACATAAACATGTAACGGATGCAGTGTTTAGAGTGGCATTCTGGGAAATACAAGGGGTCAGAAACAAGGAGTTGGCTAGATTCAACTACAGCAGACATGTTATAGGCGACcagagaaggagcgagaggaTCAATAGTTAGTTTTTTTACAGTGGGACTTCTGACAGAGGTGGCCTGTCATAGAAAAACAGTATCTCAATACTCAGTCTCTTTGACGCCTTTCCTTAATCTGTCTCGACATGAAATGGGCAGGTGGAAGCAGAATACTGGTAGGCAAAGGCACCCACCAGTTTGCTTTCACCTTACCTGTGTTTTTGATGGCAGGTGAAGGAAAGAAAACAAGGAGAGGAAACCCCTTTAGCCCATTTGAGATGTACCCAAAGAGAATGGGTGTGTTTGAGTGGTACGGCTAAAGCAACCGACTGTAGACGTGGGAGGAGAAGCCGGACACTAATGTGGTTTTCAAACAGCAAAGCTCAGAATAACATGGCAGGGTTGCCATTGTTAACTTTTTCTTTTATAATGTCAAAATAAACATCTCCAACCCCCATATCACTCAAACTGAAATCAAATGTGTGTACATTGTAGGCTACAATCAATTAGTGAGAGAGAGCCTAAAATATCGCACTCATTTGTATATATCTTGTTTGAGTCACTTTCTCGTGGGTTAAACAAAAACACCCtcatgattggttgacaatagagCCTCCCACAATGCAGTAGATTGCTGCAGGAAGAAGTTAATGAAGAGCGACTGCAGTCTAAGCTTCATTACCTTTTGATCACGTGATTTTTGTAAAGTTAATGCAGGCGACATGTAGGCGCAAGTCAGACAATTTTTATTCtcataatgcaacacactttgaaaggcgGTGACCAATGCACCGACTTGACAAAAGTGATCCGCTCGAACGCGCCCAATGTGACAAGTTGTTTCTGCGCCCAGGCTGAAAATGCTAACCTGTCAAGCCAATAATAGTGGCTTGACAGGTTATGACTAAAGGGAGTTTACCTCAACGTTTTTTTGTCAGACGCTTTACATGTGCATATTGCGTGATTTAAACAACATATGGCGTGGACTTGAGATCATTTTTCATGTATGAAAGTTTGATtattgggtgaactatccctttaagtgtCTACTCTCATACCCTCATCTCAGCCTCGGAAGTAGGTGGACACACGCAAGGACAGTCAATAGCAAACACAGAGATAGAAATGACCATGAGCGCTAAAGTCACCCTCAAGCACTAATCTAGGGTCAGTTGTCCATTTTTCCCTCCAAATGTTTAAAGTTAGGATTGAGGGAAGGTCATTTGATTCTAAATATGTGGTCAGGGGCAACTTGACTACTGAAAATGCCCCTGATGCAAGCAAATTTGGACAGACAGTTTGAGAAAAGATAGGTGAGAGACGAGGTGAATTATAGTTCAGCTATGCTACCTGCTATGTACACGTCACGAGGGATTTATAAAAACATACAGGAACTTTTCTCGCTTTTTCACATGTTCAAGAAAAAGAACCAGGCAGACAGAAAAAAAGGAGAATCTATCAAAAGGTTCAAAATTTGTTTGTAAATACATCCTCTCTTATACCTCTGTTAATGACAATTTGTTAGTCTGTCTTTCAGAAGATTTAAAACGAATAAAATATAATCTCATAATCTAATGCAaacaaaaaatactttaaaagtaCAGTATTTAAAATTGCAAAAAAATTCCACAATTTGTATTAATGCTAAAGAGCGGACGCACAATTTACAATGAACAATTTTCCAAGATCTTTTCGTATTAGTAACTCAAAAGCAATTGAGATGGATAACGGGGGAAAATCTGGTGTCCAATCTTTTGTGTCCAAACCCAGAAATAATTCAACACAGATGAACAAACCATTGGATATAAGGTGGAAATGTGCTTGTGCAAATTTTCAATTGGCCCTATTGTGTTGTCAATGGCAGTCTTAAATAGGATTGAGCAGTTACACACAAATGGGAGAAATCAGCTCCACTGGCAAGAGAAGTGGACTTTTGGTTGTAATGCCTTAGTTTGACCAGAAGAGAGCaacatttcatttaaaaaaatgtgccgTTTTCACAAATGATTGTGACTGCAGATTCTGtaggtgtgtgtacatgcgtgacAGATCAATACGTTATCGAGGAGCTATCCCATTCCAGCTTGCTCTTCTGCTTTCCCTCCTTCActtccctctcatcctcctcctcctctgtttcatCACTGTCGCCTGACTCTGCACTCATGTCGCCTGCCTGCTCatcgtcctcttcttcttcttcatcatcctcttcctcttcgtCTCTTACCACCTCCTCCACCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU821504 True 2718 lncRNA 0.41 3 54698863 54701655

Neighbor

gene id symbol gene type direction distance location
LOC118965528 LOC106568937 coding upstream 28748 54557953 ~ 54670115 (+)
LOC110530143 LOC106568938 coding upstream 142730 54526426 ~ 54556133 (+)
rb11a rb11a coding upstream 200896 54488934 ~ 54497967 (+)
LOC110530137 LOC106568943 coding upstream 256785 54407457 ~ 54442078 (+)
LOC110530135 LOC106568944 coding upstream 295520 54392338 ~ 54403343 (+)
LOC110530145 LOC106568934 coding downstream 298207 54999862 ~ 55003924 (+)
LOC110530147 rbp2 coding downstream 306362 55008017 ~ 55010157 (+)
LOC110530146 LOC106569002 coding downstream 309250 55010905 ~ 55025208 (+)
LOC110530148 LOC106568930 coding downstream 337363 55039018 ~ 55062662 (+)
ap2m1 ap2m1 coding downstream 363075 55064730 ~ 55072215 (+)
G723115 NA non-coding upstream 3578 54695052 ~ 54695285 (+)
G723092 NA non-coding upstream 27281 54671360 ~ 54671582 (+)
G722370 NA non-coding upstream 182268 54516280 ~ 54516595 (+)
G722369 NA non-coding upstream 184319 54514328 ~ 54514544 (+)
G722334 NA non-coding upstream 191418 54505382 ~ 54507445 (+)
G723210 NA non-coding downstream 136113 54837768 ~ 54867601 (+)
G723294 NA non-coding downstream 300314 55001969 ~ 55002233 (+)
G723525 NA non-coding downstream 328499 55030154 ~ 55030524 (+)
G723543 NA non-coding downstream 372174 55073829 ~ 55074170 (+)
G723539 NA non-coding downstream 384316 55085971 ~ 55101530 (+)
rps28 NA other upstream 770904 53926018 ~ 53927959 (+)
mrpl34 mrpl34 other upstream 1027004 53670348 ~ 53674103 (+)
G721689 LOC106583873 other upstream 1321158 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 4057697 50607401 ~ 50641183 (+)
LOC110530153 LOC106568927 other downstream 432375 55120291 ~ 55136638 (+)
LOC110530939 LOC106568914 other downstream 758041 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 1008585 55710156 ~ 55724271 (+)
G725573 NA other downstream 2281915 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 2767217 57421244 ~ 57478855 (+)

Expression


Co-expression Network