G723539


Basic Information

Item Value
gene id G723539
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55085971 ~ 55101530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU821959
TGTACCAATTATCTTTTATTAATTTCTCTCATACATTGCCAGCATATTTTATGCAGTCAAACAACCAGGTGGTCATTTACATCCAGCCCTTTATCTTTGCTAAACCAGTGTTTTAGAAGTAAAGATTATGACATTTTATTCAGTAAGCGTGAGCCTTGAACCATTTCCGTCAACTTGAGGACAGGACAATGTCAGATCAACTATCTTACTTTTGCTGATCCATATTCAACTAACTGTGGACTAGATGACAATACCAAAGCCTCAAGAAAATGCAGGGCAAATCAATAGAGACAAAATTGAGATAAAGTAGATGAGGACTAGACAGCAAACTGaagatgcaaaaaaaaaaaaataggactGCTTATTATCATTATGTACCACTAGTTTCTACTATTGAGTTGTTCTTTTGCCATGAGAATTATATCCGGTTTCATATCTGGTGCTTAGACTTGTGTTGAACTTCTTCCCAGTCCAACCAAGACATTTGGTCGTACTACCAAAACGGAACATTTTCAAAGCAAACATAACATTTCTTTCAATATACTAAATTGTATAGTTCATATTACACAAAAATTATAATAAAGTGGTGgcaaataagacttccaaaaagGACAACCGAAAACAGAAACAAAGCTCATGATTCCACAAGATGGTCAACTTGCCTGAGATTGACAGAACACATTACCTTATTATTTCAGAAAACCCACTACTGGAATGCAGCTTATGGCTTTTGTGTGCTGTAAAGTGTTCACCTTTATCATTTAAGGCACAAGGAAGGAATGACTTGATAGAGCTTGCCAAAAGTAACCAGCAAGACAAATAATATAGAAAAGGCCAAATAAAAGACAAATTAAGAACAAAAAGTCACAAAAAGTGCAAGATAGTGGCTCATCCTCCTTGGCCTAGCTTTGTGTAGCTTAAGAAGACTGAGAATGTTGAGTGAAGGATAATGGGATGTCACAGATCAGAGACAAGAGGTGTTTCTTGGTTGGCCAGATACTGAGTGGAATGGATGGGTTGGACATGTCATCCTACATGCCCATCCGAATGCTCTGAATGATCTGGAAGATAGCTGTCCACACACAACAAAGATGAAGAGCGCCAACAGCCAGGGTCCCACGGCTACCTTATCATCCTGAGGGTTTCTCGTGGATTTGGATACGTTGCCTCTTTGCGTGATATTCTTGCTGTGTTTTTCGTTGGCCATACGAATCCTCTGTTTGGCGACCATCTTCCAAATAAGTAGGTTATTAATTATTTTTACAATAAGTTGGGAATGTGAGTGATATGGTTAATATGCCTCACTTATGTACTGCTGGCTCTAGTCTAGAGTGCCCACTTTTTAAAAAGGAAGAATAATAGCAGCGCAAATGTCTACGTATACAAATCTTAA
>TU821962
TGTACCAATTATCTTTTATTAATTTCTCTCATACATTGCCAGCATATTTTATGCAGTCAAACAACCAGGTGGTCATTTACATCCAGCCCTTTATCTTTGCTAAACCAGTGTTTTAGAAGTAAAGATTATGACATTTTATTCAGTAAGCGTGAGCCTTGAACCATTTCCGTCAACTTGAGGACAGGACAATGTCAGATCAACTATCTTACTTTTGCTGATCCATATTCAACTAACTGTGGACTAGATGACAATACCAAAGCCTCAAGAAAATGCAGGGCAAATCAATAGAGACAAAATTGAGATAAAGTAGATGAGGACTAGACAGCAAACTGaagatgcaaaaaaaaaaaaataggactGCTTATTATCATTATGTACCACTAGTTTCTACTATTGAGTTGTTCTTTTGCCATGAGAATTATATCCGGTTTCATATCTGGTGCTTAGACTTGTGTTGAACTTCTTCCCAGTCCAACCAAGACATTTGGTCGTTCTCTTATGGAGAcagtcgaagaacccttttggaacccttttttcaaaGAGTGTATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU821959 False 1393 lncRNA 0.38 3 55085971 55089694
TU821962 True 550 lncRNA 0.36 2 55085971 55101530

Neighbor

gene id symbol gene type direction distance location
ap2m1 ap2m1 coding upstream 13756 55064730 ~ 55072215 (+)
LOC110530148 LOC106568930 coding upstream 23309 55039018 ~ 55062662 (+)
LOC110530146 LOC106569002 coding upstream 60763 55010905 ~ 55025208 (+)
LOC110530147 rbp2 coding upstream 75814 55008017 ~ 55010157 (+)
LOC110530145 LOC106568934 coding upstream 82047 54999862 ~ 55003924 (+)
LOC110530151 LOC106599070 coding downstream 914 55102444 ~ 55106033 (+)
LOC110530153 LOC106568927 coding downstream 18761 55120291 ~ 55136638 (+)
otol1a LOC106569022 coding downstream 82897 55184427 ~ 55190256 (+)
LOC110530158 LOC106568923 coding downstream 122028 55223558 ~ 55261073 (+)
lrrcc1 lrrcc1 coding downstream 168727 55270257 ~ 55293244 (+)
G723543 NA non-coding upstream 11801 55073829 ~ 55074170 (+)
G723525 NA non-coding upstream 55447 55030154 ~ 55030524 (+)
G723294 NA non-coding upstream 83738 55001969 ~ 55002233 (+)
G723210 NA non-coding upstream 218370 54837768 ~ 54867601 (+)
G723112 NA non-coding upstream 384316 54698863 ~ 54701655 (+)
G723563 NA non-coding downstream 7081 55108611 ~ 55108957 (+)
G723601 NA non-coding downstream 79586 55181116 ~ 55181330 (+)
G723606 NA non-coding downstream 84758 55186288 ~ 55186501 (+)
G723604 NA non-coding downstream 101335 55202865 ~ 55203789 (+)
LOC118965528 LOC106568937 other upstream 415857 54557953 ~ 54670115 (+)
rps28 NA other upstream 1158012 53926018 ~ 53927959 (+)
mrpl34 mrpl34 other upstream 1414112 53670348 ~ 53674103 (+)
G721689 LOC106583873 other upstream 1708266 53377232 ~ 53377705 (+)
LOC110530024 LOC106568723 other upstream 4444805 50607401 ~ 50641183 (+)
LOC110530939 LOC106568914 other downstream 358166 55457870 ~ 55461071 (+)
si:ch211-267e7.3 LOC106568906 other downstream 608710 55710156 ~ 55724271 (+)
G725573 NA other downstream 1882040 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 2367342 57421244 ~ 57478855 (+)

Expression


Co-expression Network