XLOC_026308


Basic Information

Item Value
gene id XLOC_026308
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 22408790 ~ 22421923 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00053000
aggcaccattatttatttataatttctcaCATTGCGTTAATCTAGTAAAGTGATGATATCTGTTCACTGTTTAAAACTGACGTACATACATGTTAtcatattttcaaaatatatgaactttcataatgttaaaaacatgttGATCCATTTCCTTTACTGTATATTCAGTAATTACCAGTGTAAAAACTATGCACATATTTGCATATAATTAAATATGCTATCCTTTTTATTTACAGAACATGTCTCTGTGATAAAACTGCTAATTATTTCTTACCcacatttttatataaacaacctatttaaaatatgtacagCTTTAGTCTACATCTGCAGTTTGTATTTAACAcaatttaaatgcacattttactCTGCTGCATAATGTTCATTATATCCATTTTCACTTCAGTACATTGTACTgtcagcatttgtttttgtttttttagacaaTATTCGAGCTTGAAGAATTACAGACAGTGGAAGAATGTTAGTCATACAGGGTATTATTAATAAAACTCCTTCCCCCCTTTTTCATCCACAGATAAGTTCAACAGCCAGTGCTTTTTCCACATTAGTGATTATTGAGCACTTTAAAGCTgaagtttctttttattttttttccagagaaaaaaattatacatgAGGCAAATGTCCATACCTTGTGGTAATTTGTTAGTTCAAAAACTGCGCAGAAATctcacagaaaaaaatacaattaaatgtttgtttagcTAACTAAAAGCTCTTTTGTTGTTCCACAGGAACAGTTTTGGGTGAGtagcaataatatacagtatattattcaGTAACATATACACACGTGCTCTGCTTGCCTAATATCCATTTTAAGTATAGTAATGTCTAACTGAGAACTCTACTGCTGTCTCATCCCAAGCATAACACCTTGATAAACTAGATGTTCTTATTAAAATCCATTTGATCGTATCAGCTGATGATCCCTTGAGTTTTTTGGCagtaccaaaaaataacacagacGGCATTCAGGAACAAGAGTTTCGAGATGCAGAAGCTCTTGATGTTTCAGAAGGCACTTATTAATTGATCTGGGCAGTCAATATCCAATCAGAAGACAGACATTTATTTCAGGGATAATGGAAATGAAGGCATTGATCAATGCATTTCCTTTCCTTCCATAGGGAGATTTCATTTGGTCTGGAAAAGCTCATTGAACTCGTTGAGTACGAGCTCCACAATCTGGTTCTGGAAGACCATGTGCATGGTGATGTTGGACTCCTCCTGTGGCCTCAGCAGTGTTGGGCCGAACACAATTGCCGTGCTTTGGACAGACATGCGGTTCATCTCACCATGCTCAATCACCCTGTGGGACAGATGGTTACTTGGCAATGGAGATTTTTCCGGGACGTCTTCTGCTTCATCCTCTGAGTTATGGCCGTGTTCATGCTGTCAAAGGTGGACCATCTTGTTCTACTCCATTTCCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00053000 True 1457 lncRNA 0.35 3 22408790 22421923

Neighbor

gene id symbol gene type direction distance location
XLOC_026307 ifnphi1 coding downstream 42228 22362687 ~ 22366562 (-)
XLOC_026306 ifnphi2 coding downstream 49671 22341043 ~ 22359119 (-)
XLOC_026305 myl4 coding downstream 165922 22222244 ~ 22242868 (-)
XLOC_026304 maptb coding downstream 192019 22158024 ~ 22216771 (-)
XLOC_026303 NA coding downstream 253267 22152607 ~ 22155523 (-)
XLOC_026309 cyb561 coding upstream 395232 22817155 ~ 22829710 (-)
XLOC_026310 NA coding upstream 617585 23039508 ~ 23069636 (-)
XLOC_026311 NA coding upstream 798347 23220270 ~ 23240721 (-)
XLOC_026312 NA coding upstream 901321 23323244 ~ 23327553 (-)
XLOC_026313 rapgefl1 coding upstream 913044 23334967 ~ 23407720 (-)
XLOC_026301 CR790381.1 non-coding downstream 791750 21616920 ~ 21617040 (-)
XLOC_026295 CR387996.1 non-coding downstream 1201844 21201428 ~ 21206946 (-)
XLOC_026285 NA non-coding downstream 1493080 20901066 ~ 20915710 (-)
XLOC_026283 NA non-coding downstream 2007066 20130274 ~ 20401724 (-)
XLOC_026314 CU459159.1 non-coding upstream 960569 23382492 ~ 23382608 (-)
XLOC_026322 NA non-coding upstream 1241221 23663144 ~ 24050854 (-)

Expression


Co-expression Network