G724237 (LOC106568902)


Basic Information

Item Value
gene id G724237
gene name LOC106568902
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 55815386 ~ 55819692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU822720
TGTCTGACAATTTGCTTTTTAATTGTTTTGTTAGCATGATTAGCTTTTACAAATATGCTCCCAGGTTACAGTTTCAACAGCATATTACATTGAGGCACTCCCATAAAGGTTTTATTATTATATCAAAAGTGCTGACTAGTAGCCGACAGCAGCATAAAAGGCTAGAGAGTACAGTAAACATCAGAGGCACTTGTATCTTCAGGAACATTTAACATTTAAGATCAGAGATTCAATTCAAAAGTCTACTTTTCGGCTGGTTTCTTTCTCTCTAAATGACATCATTAGTATATATTCAGCTGTGTAAGGAAACGTTATGAGCAAACATATGTTTTACAGTATTAGCCACATCCTTACATTGAGAATATATTGAGGATTATCCAAATACAAGGCTCTGGTTTTAGCATCTCagaagcattttactgttagttgAATGTTTTGTGCAAAGTTGGTTTTCTTCTTCTCTTGTCATGGAACGTGCAGGTTTGCTGAGTCTTGCATGGTGTATTTTTACACAAACTGTTCAGGTTTCTCCATACTTGTACTTGAAGCTGTGGGGAATGTAAAAGAAAATGAAACACATTTACCATATCACCTCATATCACCTCAGTTAGGACTACTTCAGATTAGTTGTGCTATGTTTATATTAATGTGACTCCTGAAAATAACCTCATGACAAAAGTAtgggacagggttgtgttcagtatGACAGAACGGTGTGCAACATTGAATTCAATGGAAATGGTAGAAGAGCCCAGTTAAAAACAGGTTGTGATTATGGTGGCCCAGAGGGCAGTTACCATATGGTGGGGCATATTGACCACACGGTCACGCAATGTAGTAAACGTTGAAGAGAACCGAACGCACCCCAGCTCTTTCCGTGAAGTTTGGTAATACCCACCTTCCCATAGCCTACTCACCAAGCAGACACAGTTGTTAGGAAAAAGACTGGCTGAACCAACCACACGACTGGTGAGCTAAGATTGGTGTATGTCCTCAGTTGTGTCAAAAGCATATTAGTTCGGGAGACATCCGTGTCTAATGATCTGATTGATGTCTGGACCGTTAAGATCATTAAGGTCCAGACcgtccactgtctgtctgtgtgctcagAAAAATTATGAGAGGTGACAGAGAGGTTGTTAGCACTGTCTGTCACATGGGGTGAGAGTGTTGTTAGACACATggttgtgtgcgtgtatgtgtgtgtgtgtagtgttggtgTGATGACATGCATTAATGATAAATAAAGCAAACATTGAACAAATACACAAAAAGAGttcagcagcacacacacacatacacacacaatcaaacagtTCATTGTTACACAAGAGAAGTAAGCCAGCTAATAATGAACAAATTATTGTTTAAGTTACAGGGCAAGCAATCATGCATACTACTGTAAGTATACAGAGGACAGTCATGGCATACCAGCATTGTAATGTAGAAAAGAGATTCtagaaaacacacatacaaataatTAATATTAAATTAGTACAAAACAATTATTTAGTCAGAGCGTAATTTGATTTGCAATATACATTCACACTAGTGATTTACAAAATGTCAGTAAAAAAGTCAATTTTATCTTTGTTCCCCAAAAGCAATAAACATAAAAAAtatcaaattatattttacatATTATACAAACAGTCAAGATCCCTTTGGCATCACGTAGGAATCTTAAGGCTACTTGCGTAACCCCGGGTCTCTGATATTATGAGTGAGATACATCACGAGGGATTCCCCGGAAACTCATTAGCTCTAAGAACCAATCAAACATGTCTGTCGGAGAGAGACAGGTCAAATTATGAAGGTATGCCTAACGAGCTGCATCGCATATCTCCTGTAAGGAGATGCCCTTGAACAGCGCCCAAAAAGTAGCCATACCTGTGGTTAAAGGTCTTCACGGCTCCAAAAAGTTGAACCCATTCCGAAATGGACCTAGGGCTTTCCTACCCAGACCCACTATGCataaatgcatttaaaaaatatagagACCCATTCCAAAGGGACGCGAGGAAAACTAGACCTGTTCCATATAGAAATGGTCGGATTCAGACCCGGTTCAAGTGGGGGAAGCAGCAGAAAAAGTCATTTtttaagctactttattaactgGAGCTGATAAAGCACAAGAGGATCTTATCTTGTTTCTATACAGTGAGCGTGTAGAAGGCAAAAACTGTCAGATTGGCtaatagcttctaccccaagactatcaggctgctgaatagccattAGGCAGTGTGGCTCTCGACCGATAAGCAGTGAAAGCTAGGATGGCCGGTCTAGTCAACGCGGCACGGTAGTGGGTTGAGCTAAATGAGAAAGCGAGCTAGTAATTGTACCCTTCCAGGTAGAAAAACCAGTCGGTAGAATAGCTAGCCTTGACTTCAATCATCAACACAAGCTCTCGTATGGATACACAACATCACTATGTATTTATACAGTGATAAATTGTGATTAGAATGAGAGTTTCAGGTCACTCTGTGTTGCAATGGCTACGACAAAGAGAAACTGATGCAGTGAAGAAGCCAAGTAACCAGCACACAGTTCAACACACTAGCCAGCCAATGAAAGACCTCAAAAGTGCTGTCAGTCAAAGCATATAAAGTGAACTTTGTTAGTTACAGTAGCGTCAGCAGTTGCAGGTTGGTTACATGAGCATGCAGCAGGGCTTTGTTCTCTTTTTAATCTTTTTAATCTTTCTGATACCTGGGGCAGAGTGCTTCTCTGTCCCGTCCTCGTCGGACTGTCCGTCTGAATACAGGTAGTGTGACTCTTTGGCCTGTTGACCAGGATAGACCACATTCCTTGATGCTGTGTACGGTGATGCATTGTTTGAGTTAAAATTAGCTGTGGGCTCTGCCATGTATTTGATTAAGTTCTGTTGAGGTTGACAGTGATGGTAGCCCCGGTTGTTATAGCCATCCGCGGTGTAGGTGTTAAACTGAGGGTTACTCTCGTCCACCCCATCCTCGTCGCCAATGACGACAAGCTCGGCCCGGATGGATCCTTCATATCCAAGGCCACGTCCACTGCCATCCTCTGCGGTCTGGTAGCCCATAAAGATGGCGGTGACAGGCTCGGACGTGTCCATGGTGTTCAGGATACTGAAGTGCGTGTCTTCCTGGTAGATCGGAGACGGCCTCAGGTCCATTTCAACTGATGAGTCGTAAAACATCCCTCCTCGCGGGTTCTCTCTAGGGCTATGGTAGAAGTCGTCGGTGGGGAACCCTTTCTCCACACCATAAGAGAAAGGATTCTGGTTATACCCGTTGTTTGGCTGGTAGTACTCTTCATCCTGCCTGCCAATGAAATAATGGACTGGAATGTGAGGGGAGGAGGAAAGAATCTCCAGCCCTGAGTTGTGGACTCCGTCAATATAGTGGAGCTCCTTCCTGGAGAGGACATCACGCTTATACGACTCTTGCTGATACCCATTCCCATTGGTTTCGTGGATGACTTTAGCATTACTCTGTTGGGGTCTGTTGGGGACTGAGGCCCTCCAGCTGCAGGTGTTGGAGAATGCAGGCACTGATTCCTGGTGGCCCCGGTGGTCTTTTGGGAAAGCACCGCTTTGAGGCATCTTCTGCACTATACCCTTTCTGAGCTGCTCCGCCACCTCCATAGGGCTGAGCTCATGGTGGCCCCGAGAGCCACGGGGGGTGGAGAATGCAGGTAATGTTGGCTTCTGGTGGCTCTGTGGGCCACAGTTGGTGGAGAATGCAGACACTGATTCCTGATGGCCTTGGTGGCCCAGTGGGCCGCTTTGAGACTTCTTCTGCTCTGTAGCTGCTCTGAGCAGAACCTCCACCTCCATAGCGCTGAGCTCGTCCACTCTGTTAGAACCATCCCCCAGCTGAGACTCGGCAGACCGCAGGGCATAGACAGACTTGCGGCCGTCGTCATAGACTTTGACCCCTCTCTGCTGGAGCACCTGGGGGGTGACAGTGGATGTGG

Function

NR:

description
uncharacterized protein LOC110530178

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU822720 True 3966 lncRNA 0.44 2 55815386 55819692

Neighbor

gene id symbol gene type direction distance location
frrs1a LOC106568904 coding upstream 14742 55786481 ~ 55800644 (+)
si:ch211-267e7.3 LOC106568906 coding upstream 91115 55710156 ~ 55724271 (+)
LOC110530172 LOC106568908 coding upstream 132464 55631924 ~ 55682922 (+)
LOC110530941 LOC106568999 coding upstream 185172 55625971 ~ 55630214 (+)
LOC110530940 NA coding upstream 260592 55549889 ~ 55556293 (+)
LOC110530181 LOC106568899 coding downstream 96213 55915905 ~ 55978796 (+)
LOC110530182 NA coding downstream 250287 56069979 ~ 56075431 (+)
LOC110530943 LOC106568897 coding downstream 294262 56113954 ~ 56250195 (+)
LOC118965531 NA coding downstream 473900 56293592 ~ 56305010 (+)
LOC110530187 cnn3 coding downstream 585092 56404784 ~ 56424593 (+)
G724192 LOC106568905 non-coding upstream 74839 55739739 ~ 55740547 (+)
G724191 NA non-coding upstream 76235 55738442 ~ 55739151 (+)
G724154 NA non-coding upstream 146828 55668217 ~ 55668558 (+)
G724152 NA non-coding upstream 149023 55662590 ~ 55666363 (+)
G724428 NA non-coding downstream 26709 55846401 ~ 55846617 (+)
G724441 NA non-coding downstream 34746 55854438 ~ 55854956 (+)
G724451 NA non-coding downstream 49294 55868986 ~ 55869239 (+)
G724454 LOC106568900 non-coding downstream 53348 55873040 ~ 55879674 (+)
G724456 NA non-coding downstream 62887 55882579 ~ 55882942 (+)
LOC110530939 LOC106568914 other upstream 355266 55457870 ~ 55461071 (+)
LOC110530153 LOC106568927 other upstream 678755 55120291 ~ 55136638 (+)
LOC118965528 LOC106568937 other upstream 1145272 54557953 ~ 54670115 (+)
rps28 NA other upstream 1887427 53926018 ~ 53927959 (+)
G725573 NA other downstream 1163878 56983570 ~ 56984285 (+)
LOC110530213 LOC106568871 other downstream 1649180 57421244 ~ 57478855 (+)
G725878 NA other downstream 1693914 57513606 ~ 57515394 (+)
G725907 LOC106581475 other downstream 1735031 57554723 ~ 57555482 (+)
LOC118965533 NA other downstream 2033320 57850799 ~ 57854417 (+)

Expression


Co-expression Network