XLOC_002631 (inip)


Basic Information

Item Value
gene id XLOC_002631
gene name inip
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11319971 ~ 11323134 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004892
ATGCCTGACCGAAGAAGACAAAAGGAGAGCTACTTTATTCTTCACAGCAGACCATGCATTTGTTTTAGGCTAAATTTTTGGATAAATTGGGTTTGACGCCTACTTAGAGGTAGTTTCTGCGGgtacattttaagatttattacACATGTAAAAATGGCAGCAAATCCGCCTGGACAAGGATTTCAGAACAAAAACAGAGTTGCTATTTTAGCTGAGCTGGATAAAGAGAAAAGACGCCTGATCCAGAGTCAAACTCTCAACAACCCAGGAGCCAgCATTCCCCTCTCCAGACCAGCTGTGAATAAAGAGTTCAGGGATCAGGCTGAACAGCAGCACATTGCAGCGCAGCAGAAAGCGGCTTTACAGCACGCTCATGCACACTCATCCGGCTTCTTCATCACTCAGGATTCCTCCTTTGGGAACCTCATCCTGCCGGTGTTACCCAGACTTGACCCCCTtgagtaaatgaacatcagctctAAGGACAGTATTAGCATTTAGTGAAAACTTAGTTCCCCTATTGATGGATGACTCTCATATTTCATGAATTGTTTGGTCAATTTTTTTAAGACTGTTGtattgttgtagttttttttacataaaattatgAAAACTTAA

Function

symbol description
inip Predicted to be involved in DNA repair and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Predicted to be active in nucleoplasm. Orthologous to human INIP (INTS3 and NABP interacting protein).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0006281 DNA repair biological_process
GO:0070876 SOSS complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-961 Predicted to be involved in DNA repair and response to ionizing radiation. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of SOSS complex. Predicted to be active in nucleoplasm. Orthologous to human INIP (INTS3 and NABP interacting protein).

Ensembl:

ensembl_id ENSDARG00000028523

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004892 True 618 mRNA 0.41 4 11319971 11323134

Neighbor

gene id symbol gene type direction distance location
XLOC_002630 ptbp3 coding downstream 58406 11146321 ~ 11261565 (-)
XLOC_002629 ak3 coding downstream 307971 11000894 ~ 11012000 (-)
XLOC_002628 exd3 coding downstream 350375 10879537 ~ 10969596 (-)
XLOC_002627 nrarpa coding downstream 455640 10860759 ~ 10864331 (-)
XLOC_002626 NA coding downstream 532322 10784334 ~ 10787649 (-)
XLOC_002632 lin54 coding upstream 1381 11324515 ~ 11353469 (-)
XLOC_002633 plac8.2 coding upstream 48827 11371961 ~ 11376491 (-)
XLOC_002634 plac8.1 coding upstream 59231 11382365 ~ 11385155 (-)
XLOC_002635 srek1ip1 coding upstream 71394 11394528 ~ 11397590 (-)
XLOC_002636 adamts6 coding upstream 270864 11593998 ~ 11764439 (-)
XLOC_002625 NA non-coding downstream 605744 10712178 ~ 10714227 (-)
XLOC_002623 BX323065.1 non-coding downstream 987544 10319308 ~ 10332427 (-)
XLOC_002621 NA non-coding downstream 1031288 10261345 ~ 10288683 (-)
XLOC_002638 NA non-coding upstream 572239 11895373 ~ 11898575 (-)
XLOC_002642 NA non-coding upstream 1975705 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 non-coding upstream 1981931 13305065 ~ 13305183 (-)
XLOC_002646 BX293994.2 non-coding upstream 2283893 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 non-coding upstream 2288999 13612133 ~ 13612248 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location