XLOC_026313 (rapgefl1)


Basic Information

Item Value
gene id XLOC_026313
gene name rapgefl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 23334967 ~ 23407720 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051311
ATGCCGGCTGGAATGAAGCCTCTTGAAAAATTCTTGAAGAAGCAGACCAATGCACTCACTCGGGCGGGTGGTTTTGGGGAGAAGGCTACCGGCACCGGGGCATCCAGACGGCGGGCCAGCCTGTCCCGTGTGGTGCCATTCTTCAGGGAGACGTCTCCCGAGAGCGGCCCGGCGAGGGAGGTGTTCAGTCCGGAGACCGAAGAAGCGCCGTGCTGGCCCTCCGCAACTGCGGACATCAGGAGCCCGTCGCTGTCCAGCGATGAGCAGAGCTCGGAGGCGAGTCTGGACACGAACTGGACCCCTCTGCCCGCGGACACTCCAGAGAACCTAGCGCTGGCGCTGCTGGACAGCGTGGCGGGAAAGCGGTACGCCAACTGCACAGAAATACTCCTGGATGACTTCATGCTAACACACCCAATCTTCTTGGCTCCAGACAAGTTCCAGCAGGTCTTGCTTCAGCAATTCAGTTCAGAGGGTAAGCAGGGTGAGGGTTGGCCCGGGTGGGATGGAGCAGAGCGAAAACTTGCAGTTCTGACTGTGGCCTTCCGCTATCTGGACACATACAGAGACTTACTGCAGGAGGAGGGCGATCGCTCCAACACCTTCCCAAAGGAGCTGTATTTGTGTGCGGTTGACGAGCTCAACCGCTTTCCTGAACTGGTGGAAGACGTGCTGAAACTGCAGCGCTGGACTGAGATATTACACAGCCCAGCCGAGGAGGACAAGGAAAGTCGTAAGAAGCAAGTTCGCCCACTCTTCCGACACTTCAGACGCATCGACGCCTGCCTGCAGCCCCGAGAGGCTTTCCGTGGCTCAGACGAGATCTTTTGCAGGGTTTACACGCCAGATCATTCATACGTTACCATACGAAGCCGTCTTTCATGCCGGGTTGGGGAGATCTTGGCTTTGGTGAAAGAGAAGCTCCAGTACAGCGAGGACCAGCCAACCCAACCTGCCAACCTCATACTGGTGGCTGTCACCTCATCAGGGGAGAAGGCTGTGTTCCGTCCGAGCGACGAGGCCGTTTTCACCACTCTCGGTGTGAACACCCACCTGTTCGCCTGCGAGCCGGCGGAGCTCGAGAGCCTGATTCCTCTGCCTGAGGAGATCCACTGGACACCAGGAGACAGTAAACTGCATGACATGAGTGCAGAGGAGGTGGCCAATCAGCTGGTGGTGTTCGACTGGGAGCTCTTCAGCTGTGTGCACgagGTGGAGTTTGTGTGCTACGTGTTTCACGGTGAGCAGGCTCGCTGGCGCCCCCTAAACCTGGAGCTGATCTTGCAGCGCTGCAGTGAAGTCCAGCACTGGGTCGCCACCGAGATCCTGCAGTGCCAGTCACTGCCCAAGAGGATACAACTGCTGCGCAAGTTCATCAAGATCGCAGCCTTATGTAAGCAGCAGCAGGATCTGCTGTCGTTTCTGGCTCTGGTTCTGGGTCTGGATAACCCTGCTGTGAGCCGCCTGCGTCTGACCTGGGAAGGTTTGCCAGGAAAGTTCCGGAAGCAGTTTCAGCAGTTTGAGAGCATTGCAGACCCTTCAAGGAACCACAAATCATACCGAGACCTTCTAGCGAGTCTGAGAGCCCCACTCATACCCTTCACCCCACTGCTGCTCAAGGATCTGACTTTCCTTCATGAGAGCTGTAAGACTTTCCATGGAGAGCTGGTTAATTTTGAGAAGATGcACAAAGTGGCGGAGATGGTGCGCAGCATCAGGCGGTATCGGAGCTCTCAGTTAGCTATGGAGGCCGAGCCGTCCCCTTCGCACCTCCAGACGAAAGCGTACGTCCGGCAGCTGCAGGTCATCGACAATCAGAACCTGCTTTTTGAGATGTCCAGCAAACTGGAGCCAAAAGACATGTGA
>TCONS_00051312
AGCTGCAGAGGAGGcgggtggagagagagagaaagagagggagagagagggtgtgtgtgtgtagcctgTACTGTATGCGAGAACGACTGAGTGCAGTGTTTGTGCGGACTCGAGgcgcagaaagagagagagagacacttgGAACCGTGACAGAAAAATAAACGGGGATCCAACAGATCTGAAGACACGGAGTCCTCATCTCATCATCACCGTCCATCCAGCCGCGCGTCTCTGCGACAGAAGCCCGCGTCTCCTTCAGACCTGCTGCGGTGGACCCACGATTCATTTATACGCTCCAGCATCTTGACAGAGACTGATCTTACATGTACATATTCATTATTAAGACATACCTGCTGCTATTTTCATCTTTATTCTGATTGTTCGTCTGATTGATTCATCGATCTCGGCTTTATTTGACAGTGGCGATGATCGTCCACACATAGGCTGCTGCTCCTCGAGCTGAAGGACTGCAGTGGAGGACGGGTTTCCCAGGGATacgtttggattttttttcttagcGTAGTAAGGACTCCATCAGCATCACTTGTGTACGAGGACCGTTGAAAATGGCCGTGTTTTATTCTTGACACCTCAACACGGCGGAGAACAGAGTCTCTTCAGGTATTTTCTCGATCCGAGTTTCAGCATTATCCGGCTATGATGTAGACGCTCACGGCAATACGCTCATCATCAGTGTTCCTTATTGAGTATTAATTAGGATCAACCCAGGGCCTTCTTCTGATTTCTGTCATCAAAATGCCGGCTGGAATGAAGCCTCTTGAAAAATTCTTGAAGAAGCAGACCAATGCACTCACTCGGGCGGGTGGTTTTGGGGAGAAGGCTACCGGCACCGGGGCATCCAGACGGCGGGCCAGCCTGTCCCGTGTGGTGCCATTCTTCAGGGAGACGTCTCCCGAGAGCGGCCCGGCGAGGGAGGTGTTCAGTCCGGAGACCGAAGAAGCGCCGTGCTGGCCCTCCGCAACTGCGGACATCAGGAGCCCGTCGCTGTCCAGCGATGAGCAGAGCTCGGAGGCGAGTCTGGACACGAACTGGACCCCTCTGCCCGCGGACACTCCAGAGAACCTAGCGCTGGCGCTGCTGGACAGCGTGGCGGGAAAGCGGTACGCCAACTGCACAGAAATACTCCTGGATGACTTCATGCTAACACACCCAATCTTCTTGGCTCCAGACAAGTTCCAGCAGGTCTTGCTTCAGCAATTCAGTTCAGAGGGTAAGCAGGGTGAGGGTTGGCCCGGGTGGGATGGAGCAGAGCGAAAACTTGCAGTTCTGACTGTGGCCTTCCGCTATCTGGACACATACAGAGACTTACTGCAGGAGGAGGGCGATCGCTCCAACACCTTCCCAAAGGAGCTGTATTTGTGTGCGGTTGACGAGCTCAACCGCTTTCCTGAACTGGTGGAAGACGTGCTGAAACTGCAGCGCTGGACTGAGATATTACACAGCCCAGCCGAGGAGGACAAGGAAAGTCGTAAGAAGCAAGTTCGCCCACTCTTCCGACACTTCAGACGCATCGACGCCTGCCTGCAGCCCCGAGAGGCTTTCCGTGGCTCAGACGAGATCTTTTGCAGGGTTTACACGCCAGATCATTCATACGTTACCATACGAAGCCGTCTTTCATGCCGGGTTGGGGAGATCTTGGCTTTGGTGAAAGAGAAGCTCCAGTACAGCGAGGACCAGCCAACCCAACCTGCCAACCTCATACTGGTGGCTGTCACCTCATCAGGGGAGAAGGCTGTGTTCCGTCCGAGCGACGAGGCCGTTTTCACCACTCTCGGTGTGAACACCCACCTGTTCGCCTGCGAGCCGGCGGAGCTCGAGAGCCTGATTCCTCTGCCTGAGGAGATCCACTGGACACCAGGAGACAGTAAACTGCATGACATGAGTGCAGAGGAGGTGGCCAATCAGCTGGTGGTGTTCGACTGGGAGCTCTTCAGCTGTGTGCACgagGTGGAGTTTGTGTGCTACGTGTTTCACGGTGAGCAGGCTCGCTGGCGCCCCCTAAACCTGGAGCTGATCTTGCAGCGCTGCAGTGAAGTCCAGCACTGGGTCGCCACCGAGATCCTGCAGTGCCAGTCACTGCCCAAGAGGATACAACTGCTGCGCAAGTTCATCAAGATCGCAGCCTTATGTAAGCAGCAGCAGGATCTGCTGTCGTTTCTGGCTCTGGTTCTGGGTCTGGATAACCCTGCTGTGAGCCGCCTGCGTCTGACCTGGGAAGGTTTGCCAGGAAAGTTCCGGAAGCAGTTTCAGCAGTTTGAGAGCATTGCAGACCCTTCAAGGAACCACAAATCATACCGAGACCTTCTAGCGAGTCTGAGAGCCCCACTCATACCCTTCACCCCACTGCTGCTCAAGGATCTGACTTTCCTTCATGAGAGCTGTAAGACTTTCCATGGAGAGCTGGTTAATTTTGAGAAGATGcACAAAGTGGCGGAGATGGTGCGCAGCATCAGGCGGTATCGGAGCTCTCAGTTAG

Function

symbol description
rapgefl1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RAPGEFL1 (Rap guanine nucleotide exchange factor like 1).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-404 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RAPGEFL1 (Rap guanine nucleotide exchange factor like 1).

Ensembl:

ensembl_id ENSDARG00000079912

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051311 False 1866 mRNA 0.57 15 23334967 23406964
TCONS_00051312 True 2497 mRNA 0.54 14 23340864 23407720

Neighbor

gene id symbol gene type direction distance location
XLOC_026312 NA coding downstream 7414 23323244 ~ 23327553 (-)
XLOC_026311 NA coding downstream 94246 23220270 ~ 23240721 (-)
XLOC_026310 NA coding downstream 265331 23039508 ~ 23069636 (-)
XLOC_026309 cyb561 coding downstream 505257 22817155 ~ 22829710 (-)
XLOC_026308 NA coding downstream 913044 22408790 ~ 22421923 (-)
XLOC_026315 casc3 coding upstream 21233 23428953 ~ 23461954 (-)
XLOC_026316 msl1a coding upstream 55099 23462819 ~ 23474416 (-)
XLOC_026317 si:dkey-225f5.4 coding upstream 90717 23498437 ~ 23513155 (-)
XLOC_026318 igf2bp1 coding upstream 110417 23518137 ~ 23575115 (-)
XLOC_026319 ube2z coding upstream 173894 23581614 ~ 23596840 (-)
XLOC_026303 NA non-coding downstream 1179444 22152607 ~ 22155523 (-)
XLOC_026322 NA non-coding upstream 255424 23663144 ~ 24050854 (-)
XLOC_026323 BX927395.1 non-coding upstream 278478 23686198 ~ 23688287 (-)
XLOC_026324 NA non-coding upstream 332631 23740351 ~ 23744279 (-)
XLOC_026325 CR751227.3 non-coding upstream 410202 23817922 ~ 23818046 (-)
XLOC_026329 CR790377.1 non-coding upstream 995429 24403149 ~ 24403269 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016687 rapgefl1 coding CM030122.1 CM030122.1 27576533 ~ 27584981 (+)