G726045


Basic Information

Item Value
gene id G726045
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 57858226 ~ 57860539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU824805
tttctgatcaatttgatgttattttaatggacaaaaacaaggacatttccaagtgaccccaaacactTGAACAgtagggtatatatatatatatggatattACTGAGATTCTGACTCTGTTTAAAGTAAGTCACAAGAAAGTGAGTCATTGTAGAGGCTCATGTAGCCAGCCTAGTCGGGCCTCAAAGGGAAATGGATCAGGGGTTTATTCGGAAGTCTTTGCCACAGTGTTTCATTTGGTTTCTCTTTTTTCACGGTTTAAACCGAATGTCCTTCAAAGCCAGACTAAATCAAGATCCTGAGAGTTCAGCCAGACAGCAGTCTACATTTCTGTTCATCCTCCTATCAGTTTCAAAACGCCAGTTAAAGGTACATGTAACGCACTGATAAGGACTGTTTTGAACAACTCTTTCTAGAAAACAGATCAAATAACACtgtttacttaaaaaaaaatatttaaaaaagattGAATCTAATGACCGAACAAAGCTTATTTTAGCGGTCAGTAAAATAGGTTGCTGTTATATGAATAGACAGCTTTAATAATGTGTACTCCTGTTTGGACTGTTGTCTAACAAAGCATTCATTAATTTACACAAGAGGGTAAATGAACGCAGCTAAAACAATAATGACCAGGATTTTCATGCAATGTAGCAGGGTTGGGGTTAATTCCATTCCAATTCTCCTAAATCACATATCCTAATCGTATCCATCCTATACACTACATACGTATTTTAAATAGACTACTTTTACCCTAATTACAGACATGGACAAAACTATGATCGTATAATAATGTAATACAATTATAATACACCATATTCAATACAGAAcataatatatagttgatgtaCATATGTTTAGTCATACCTCCACAGTAACATTCAGCATACTGCATACGCAGATAAATGGGAATTTTATTCTTCATGACGGCAGTTGAAACCAGTGGCGTGCTGTCTTAGCCCACATGCAGTGGAGTCCAAAATGATTGGATCCCTTAATAAAgctgagcaaaaaagactgtataaaatataaCATGTCATATGACCGGTTCCATTCTAAGTGCCAAAGGCATTTAGCAAACTATGATCAGGTGACATGAAAATAGAAGTGCATGGCCACAAAATACCTCATCTcgactgtaaaatatggtggtggatctttgatgttatggggctactttgattccactggtcctggggggCTTTGTTAAGAAGGTCAATGGCGTCATGAACTTTACCAATTACCAGGACATTTGAGCCAAAGACCTgtttgcctctgccaggaggctaaAACTTGgacgcaagtggatcttccagcaagataATAACCTCAAGAACACATCAAagtccacaaagaaatggttaactGACcaaaaaaatcaacattttgcctATGGCCAACTCAGTttctggacttgaaccccattggaAACCTGTGGTTtaaattgaagagggcagtccataaacGCAGACCAAGGAAATATTCTGGAAAGGTTCTGTTTAGAGGAGTGGTCAAAGATCCcttccaatgtgttctccaatctcataaaacatttcagaaaaaggctcagtgtcatTATTCTTGCAAGGGGTGGGTGCTGGACTATTGaaaaatggggatccatattctttttgagatttaa
>TU824804
atatatatggatattACTGAGATTCTGACTCTGTTTAAAGTAAGTCACAAGAAAGTGAGTCATTGTAGAGGCTCATGTAGCCAGCCTAGTCGGGCCTCAAAGGGAAATGGATCAGGGGTTTATTCGGAAGTCTTTGCCACAGTGTTTCATTTGGTTTCTCTTTTTTCACGGTTTAAACCGAATGTCCTTCAAAGCCAGACTAAATCAAGATCCTGAGAGTTCAGCCAGACAGCAGTCTACATTTCTGTTCATCCTCCTATCAGTTTCAAAACGCCAGTTAAAGGTACATGTAACGCACTGATAAGGACTGTTTTGAACAACTCTTTCTAGAAAACAGATCAAATAACACtgtttacttaaaaaaaaatatttaaaaaagattGAATCTAATGACCGAACAAAGCTTATTTTAGCGGTCAGTAAAATAGGTTGCTGTTATATGAATAGACAGCTTTAATAATGTGTACTCCTGTTTGGACTGTTGTCTAACAAAGCATTCATTAATTTACACAAGAGGGTAAATGAACGCAGCTAAAACAATAATGACCAGGATTTTCATGCAATGTAGCAGGGTTGGGGTTAATTCCATTCCAATTCTCCTAAATCACATATCCTAATCGTATCCATCCTATACACTACATACGTATTTTAAATAGACTACTTTTACCCTAATTACAGACATGGACAAAACTATGATCGTATAATAATGTAATACAATTATAATACACCATATTCAATACAGAAcataatatatagttgatgtaCATATGTTTAGTCATACCTCCACAGTAACATTCAGCATACTGCATACGCAGATAAATGGGAATTTTATTCTTCATGACGGCAGTTGAAACCAGTGGCGTGCTGTCTTAGCCCACATGCAGTGGAGTCCAAAATGATTGGATCCCTTAATAAAgctgagcaaaaaagactgtataaaatataaCATGTCATATGACCGGTTCCATTCTAAGTGCCAAAGGCATTTAGCAAACTATGATCAGGTGACATGAAAATAGAAGTGCATGGCCACAAAATACCTCATCTcgactgtaaaatatggtggtggatctttgatgttatggggctactttgattccactggtcctggggggCTTTGTTAAGAAGGTCAATGGCGTCATGAACTTTACCAATTACCAGGACATTTGAGCCAAAGACCTgtttgcctctgccaggaggctaaAACTTGgacgcaagtggatcttccagcaagataATAACCTCAAGAACACATCAAagtccacaaagaaatggttaactGACcaaaaaaatcaacattttgcctATGGCCAACTCAGTttctggacttgaaccccattggaAACCTGTGGTTtaaattgaagagggcagtccataaacGCAGACCAAGGAAATATTCTGGAAAGGTTCTGTTTAGAGGAGTGGTCAAAGATCCcttccaatgtgttctccaatctcataaaacatttcagaaaaaggctcagtgtcatTATTCTTGCAAGGGGTGGGTGCTGGACTATTGaaaaatggggatccatattctttttgagatttaaaaaaaatgacttgttaaacaaaatctctttctctgagcaattgtattagcatAAAATAATATGATTTTCTTTCTTTAAAATGTAGCATACAatacagctcagtatttgtataatttatttgattttatcTTTTTTGATCATCTATATCAAGGGATCCAATTACTTTCGACCTGACTGTATGTCTTAGCCCACGTACTGTGTGACTTATAGAGCTCATGAATGCCTATTGTAAGCAAACTGACTTCTCCTATTCAACCTACAATACCTTGTTGTCCTTCAACCTACCTTGTTGTCTAGGTATTCAACAATAAACACTCCTTTTTCCGTGTCGACGTCCTTTGTCCTCCAACAGTGGCAGAATGTCTCACAAACCTAGTCAGATTACAGCCAGTAACTTCCCAGTGGGCGAAAATGGATAAAacgtcatttcaaccagtttgGCTCAGTGTTTTTTCCTCCATGGGTCTCGTCAGAGCTCCGAGGTGCTGGTGGTGGCTCTCTTCTGGCTCATGGACCTCCTGAAGGTGAAGGTCTGCTTGGAGCTCCTCACCTCCGTGGTGATGAAGTAGTAACACAGAGC
>TU824806
CTTTCGACCTGACTGTATGTCTTAGCCCACGTACTGTGTGACTTATAGAGCTCATGAATGCCTATTGTAAGCAAACTGACTTCTCCTATTCAACCTACAATACCTTGTTGTCCTTCAACCTACCTTGTTGTCTAGGTATTCAACAATAAACACTCCTTTTTCCGTGTCGACGTCCTTTGTCCTCCAACAGTGGCAGAATGTCTCACAAACCTAGTCAGATTACAGCCAGTAACTTCCCAGTGGGCGAAAATGGATAAAacgtcatttcaaccagtttgGCTCAGTGTTTTTTCCTCCATGGGTCTCGTCAGAGCTCCGAGGTGCTGGTGGTGGCTCTCTTCTGGCTCATGGACCTCCTGAAGGTGAAGGTCTGCTTGGAGCTCCTCACCTCCGTGGTGATGAAGTAGTAACACAGAGCGTCTAGACAGCACGTGATGTTGGCCAGACTCATGGTCACCTGAATGTACAAGCTGATCCTTGTTTTGGCCAAGCAGTCCTCGATCAGGCGTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU824805 False 1642 lncRNA 0.38 1 57858226 57859867
TU824804 False 2136 lncRNA 0.39 1 57858312 57860447
TU824806 True 510 lncRNA 0.48 1 57860030 57860539

Neighbor

gene id symbol gene type direction distance location
LOC118965533 NA coding upstream 3809 57850799 ~ 57854417 (+)
LOC110530227 LOC106568858 coding upstream 46799 57805385 ~ 57811427 (+)
LOC110530223 per2 coding upstream 60097 57766651 ~ 57798129 (+)
LOC110530222 LOC106568862 coding upstream 157675 57697014 ~ 57700551 (+)
fam131a LOC106568863 coding upstream 216576 57632382 ~ 57641650 (+)
trnap-agg-8 NA coding downstream 55461 57916000 ~ 57916071 (+)
trnai-aau NA coding downstream 62011 57922550 ~ 57922623 (+)
trnam-cau NA coding downstream 67274 57927813 ~ 57927885 (+)
trnag-ucc-2 NA coding downstream 67836 57928375 ~ 57928446 (+)
LOC110530231 LOC106568853 coding downstream 71756 57932295 ~ 58136178 (+)
G726031 NA non-coding upstream 21676 57831389 ~ 57836550 (+)
G725969 NA non-coding upstream 135165 57722844 ~ 57723061 (+)
G725949 NA non-coding upstream 179564 57677851 ~ 57678662 (+)
eif4g1a NA non-coding upstream 257464 57597835 ~ 57625254 (+)
G726051 NA non-coding downstream 5639 57866178 ~ 57867407 (+)
G726053 NA non-coding downstream 14050 57874589 ~ 57876276 (+)
G725985 NA non-coding downstream 16286 57876825 ~ 57877752 (+)
G725988 NA non-coding downstream 33271 57893810 ~ 57894357 (+)
G726063 LOC106568854 non-coding downstream 40975 57901514 ~ 57902669 (+)
G725907 LOC106581475 other upstream 302744 57554723 ~ 57555482 (+)
G725878 NA other upstream 342832 57513606 ~ 57515394 (+)
LOC110530213 LOC106568871 other upstream 380497 57421244 ~ 57478855 (+)
G725573 NA other upstream 873941 56983570 ~ 56984285 (+)
G727161 NA other downstream 496500 58357039 ~ 58358245 (+)
G727348 NA other downstream 786320 58646859 ~ 58674005 (+)
G728057 LOC100136012 other downstream 1120392 58980931 ~ 58981271 (+)
LOC110530248 crem other downstream 1899936 59748668 ~ 59768093 (+)
G730206 NA other downstream 3180029 61040568 ~ 61042129 (+)

Expression


Co-expression Network