G727338


Basic Information

Item Value
gene id G727338
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 58629167 ~ 58649516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU826248
agagacagaggTAAGGTATATTGGGGTCGGTTCAGCTACAGTCTACGACCACCTGAGCTGTTTCAATAAACCGTATATGACAACCTATACATTAAGCTCTTTAGGTCGAAACCTAGCTTTTAGAATCCCTTTCAACATCATTCACACAAGCCCGGAGTACCGTGCGCATACCTAATCATTCTTTCTTCTGATTAACGATGTCTGTTTATTCAATGGAGGGATCTAATTTCAATCCATTACGCTTCCATTCAGGCACGTCTCAAGTATTTGCCATTCAACATGCCTGTCTATGAATGAGATGACAGAGCAGTCTGTAATTCCCATTTTTCTTGTTTTCCATTTGCTAATGTTGGATTTATTAACATTCTGGCTCTAATAGCATTCCACTTCAGAATCGTGACATGAAAAGCAATTAGCATTCCCTCCATAATAGCCATTTCAGAATTTGCTGTCATTGTCCCATTCTCTCctcctaaaaaaaaaacatatatattcatTTGTGGATTCCTTTGATAATAATTTTTTACAATGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU826248 True 533 lncRNA 0.38 2 58629167 58649516

Neighbor

gene id symbol gene type direction distance location
LOC110530232 LOC106568852 coding upstream 360784 58165647 ~ 58268703 (+)
LOC110530231 LOC106568853 coding upstream 492989 57932295 ~ 58136178 (+)
trnag-ucc-2 NA coding upstream 700721 57928375 ~ 57928446 (+)
trnam-cau NA coding upstream 701282 57927813 ~ 57927885 (+)
trnai-aau NA coding upstream 706544 57922550 ~ 57922623 (+)
LOC118965657 NA coding downstream 23051 58672567 ~ 58672675 (+)
LOC110530235 LOC100136455 coding downstream 407900 59057416 ~ 59084854 (+)
LOC110530237 LOC106568845 coding downstream 538551 59188067 ~ 59211817 (+)
LOC110530248 crem coding downstream 1099152 59748668 ~ 59768093 (+)
LOC110530249 LOC106568835 coding downstream 1126214 59775730 ~ 59825064 (+)
G727265 NA non-coding upstream 114303 58508837 ~ 58514864 (+)
G727266 NA non-coding upstream 115196 58511905 ~ 58513971 (+)
G727161 NA non-coding upstream 270922 58357039 ~ 58358245 (+)
G727124 NA non-coding upstream 333889 58294310 ~ 58295278 (+)
G727973 NA non-coding downstream 262639 58912155 ~ 58912367 (+)
G727987 NA non-coding downstream 274214 58923730 ~ 58923983 (+)
G728059 NA non-coding downstream 331888 58981404 ~ 58981618 (+)
G728232 NA non-coding downstream 461646 59111162 ~ 59112437 (+)
G728281 NA non-coding downstream 531503 59181019 ~ 59181305 (+)
LOC118965533 NA other upstream 775535 57850799 ~ 57854417 (+)
G725907 LOC106581475 other upstream 1073685 57554723 ~ 57555482 (+)
G725878 NA other upstream 1113773 57513606 ~ 57515394 (+)
LOC110530213 LOC106568871 other upstream 1151438 57421244 ~ 57478855 (+)
G728057 LOC100136012 other downstream 331415 58980931 ~ 58981271 (+)
G730206 NA other downstream 2391052 61040568 ~ 61042129 (+)
G730267 NA other downstream 2509294 61158810 ~ 61159193 (+)
G730377 NA other downstream 2720511 61370027 ~ 61810354 (+)

Expression


Co-expression Network