G728300 (LOC106568844)


Basic Information

Item Value
gene id G728300
gene name LOC106568844
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59254416 ~ 59257007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU827274
TCTCGACCACGTAGACCTCCCTCATTGTGTCGTTCCTGACGGCGTAGGTGTAGTAGAACCAACAGTCGTTGGCGTCCCTCTCCTTACAGTGGGATAGGGGGTAGGATTGGTCGGCTGGCTGGGGCAGCTTGTCCCGATCCTTCACTCTGATCAGGTTGAAATAGCTGCAGTCCCTCTGACACGTGTCCTTCTTCTCTCCAGTCTCAAAGGCCCGGCACTGAACACAcacacacacagtctccgTTGTTGCTGCAGATGTCTGTACCGTTGTCCTTCCGACAGTTACCGTCCAGGTCGTCTGTCCTCACCTCGTCTGTGCTGCACTCACACAGTCTGCCGATACGTCCTTCG
>TU827273
GCTCAGCGCAGACTCCGGGGCAGGTGGGGCAGATCTCACAGGTGGGGCCCTGGAACTTGGGGTTGGTGCATTTGCAGACGCCACACTCGCAGGTGCCCCGGCCATTACATATCTGCTTGTTGGCTGCCAGGCAGGTGGAGGTGTCCAGGGAACAGTCGCAGGCGCTGAGCGGTCACAGTTGAAGTTGTCACAGTCGCAGAATTTCCCGCTGTACCGTTCCTCTGGGTTCTCCCTCTTCTTACACTCACAAgttccacacacacagtctccgTTGTTGCTGCAGATGTCTGTACCGTTGTCCTTCCGACAGTTACCGTCCAGGTCGTCTGTCCTCACCTCGTCTGTGCTGCACTCACACAGTCTGCCGATACGTCCTTCG

Function

NR:

description
integrin beta-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU827274 False 351 lncRNA 0.56 2 59254416 59257007
TU827273 True 379 lncRNA 0.58 2 59256271 59257007

Neighbor

gene id symbol gene type direction distance location
LOC110530237 LOC106568845 coding upstream 42599 59188067 ~ 59211817 (+)
LOC110530235 LOC100136455 coding upstream 169562 59057416 ~ 59084854 (+)
LOC118965657 NA coding upstream 581741 58672567 ~ 58672675 (+)
LOC110530233 LOC106599529 coding upstream 604438 58335194 ~ 58649978 (+)
LOC110530232 LOC106568852 coding upstream 986033 58165647 ~ 58268703 (+)
LOC110530248 crem coding downstream 491661 59748668 ~ 59768093 (+)
LOC110530249 LOC106568835 coding downstream 518723 59775730 ~ 59825064 (+)
LOC110530251 LOC106568834 coding downstream 568290 59825297 ~ 59828412 (+)
LOC110530253 LOC106568832 coding downstream 815126 60072133 ~ 60077499 (+)
LOC110530254 LOC106568831 coding downstream 899335 60156342 ~ 60168950 (+)
G728297 NA non-coding upstream 34569 59219147 ~ 59219847 (+)
G728284 NA non-coding upstream 70452 59183694 ~ 59183964 (+)
G728281 NA non-coding upstream 73111 59181019 ~ 59181305 (+)
G728232 NA non-coding upstream 141979 59111162 ~ 59112437 (+)
G728059 NA non-coding upstream 272798 58981404 ~ 58981618 (+)
G728329 NA non-coding downstream 27722 59284729 ~ 59284967 (+)
G728330 NA non-coding downstream 35472 59292479 ~ 59292697 (+)
G728250 LOC106568842 non-coding downstream 36547 59293554 ~ 59293847 (+)
G728253 LOC106568842 non-coding downstream 41510 59298517 ~ 59298736 (+)
G728334 NA non-coding downstream 55108 59312115 ~ 59312370 (+)
G728057 LOC100136012 other upstream 273145 58980931 ~ 58981271 (+)
G727348 NA other upstream 580411 58646859 ~ 58674005 (+)
G727161 NA other upstream 896281 58357039 ~ 58358245 (+)
LOC118965533 NA other upstream 1400784 57850799 ~ 57854417 (+)
G725907 LOC106581475 other upstream 1698934 57554723 ~ 57555482 (+)
G730206 NA other downstream 1783561 61040568 ~ 61042129 (+)
G730267 NA other downstream 1901803 61158810 ~ 61159193 (+)
G730377 NA other downstream 2113020 61370027 ~ 61810354 (+)
G730425 NA other downstream 2172856 61429863 ~ 61468746 (+)

Expression


Co-expression Network