G728580


Basic Information

Item Value
gene id G728580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59676936 ~ 59720550 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU827579
TGCCTAAATACTTAAAATCACATATCAGTTTAAAGACATGACATCGGGCCATGTTTTCTTGAATTATGTTTGGTTAAAAGGTAGGCAAGTAACTTCATGCCTACTGTGCCAAAGCAATTTACAGTTATTAAAGTGGGAGTGTGGATATAATGGTAATATCCAAATTCCACGTAGAACTCGAGTTGCGAATGTCAATCTTTCCTCTGCGGTACCTCAAACTGTGGTCATTACCAGCTGAGAAACTGGCGAGTTGATTACTCCTGGCACAGAGTTGTCTGACCAGTGTCTTAACACCTACTCTGAGCTGATGGTTTTATTAGTCTTAAGTATTAAGGCATCTTCACTTTGGGTACCTTTTCCACCTTTGCTTGAACAGCATCAAATCCACCAATCCAGGTAAGAGGGAAACTGCCAGTCGCGACCAACACCACCGCCTGTAGAAATTGGAACTCTTCATAGCTGTGCACAGATGCCAGGTTTGCGCCAAGGTACTTTACAGTGTTGTACACAGGCTTCAGTTTTTCTCCAAGTAACTGACAGTGGCGCTAGAGCAAGCAgtacacagagacaaagacatgTCATAATGGAAGTATTAGTCAGTTGTCCAGTCTGAGAATGTGTCTTCTGGACTCTCAAATATAGGAATTAGTTCATCTCAGTCTTAACCCATGCCTTGAGGGTTCTAATATACAAGAGGGCCCAACTCCACACAATATTGAAAAGCCTATAGAAAATTGCAATTACAGCATATTAAGGGGAGGTTCAGTATTTTACATGAGGCGCCTGTTAAAATAAGGCCAAAGCACCTTTAACTCAAAAAACTAAGTTGACTTCAATTGTAGAAGGTAAGCATTATACCTCTGCATTGGGCCATGTCCTTGCAGTTTTGACAAACATGAAGCAGCGTGAATTAAATTGGAACCAGCCTCTGGGGCATGGGTTTCTTTGGTCTGCTGCAAATCTCACCAAATCATCTGAAAGGAGAAGACAGGGAGGGTTCTGAAATTGCAGCAGACTTTAAAGGATAGTCCAGACTGACCCTTGCGTCAAAAATAACATTTGGAGATCAGTCATGCcacactacaacaaaacatacacaAT
>TU827578
GATGTCCACTCCATTCAGATGTAAATCCTTTTGATTCAGTCACTGGCTTGTCTGGCTGTCATGTTTTTCTTTTAACCTGCCCTCATCTACACTGAAATAATATCCTTTCAGTAGGCCTCTATTATAattcacccccccctcatTAATACACCCTTGTGgttgaatatatatattgttttatgtaCATATGTGaacttgttagattttactgcatggttagaactagaagcacaagcatttctctacactcgcattagcatctgctaaccatgtgtacgtgacaaataaaattggatagGGAACAGATGGGGTAGGGAAATGTAACACTGAAAATTCACAGAGTGCTCTgacaacagcatgatcattttcTACTTATTTTAaagctatatacacacactgttcGTTTATGTTAATGTTTGTGGAGTAAGACAACTTTTTGGGTCCTACGAGAATTCTATTCTTCAAGAAACAATGGATCAACAATCAAATAATTTAAATGCCCACTGAACAGACACCCAGACTGCTTCTTCAAGAAACAAAGTGAAGCAATGTTTAATAACCACTCATGAGATTAAATACATACACCAGTTTTATTGACAAGCTACAATAGTTACACAACAAGTCAAACGTATTTTACAGCAACAAATACCTTCAAAGTAATTCACTATAACATGAAACATTTGCAGTTAGGATGCTGACACCAGAGTAGCATTTTTGGTTTCAATTGACAGTTTGAAGGATTAAACAGGTTCTTATGGAGCACACGGAGGGATAGCTCTTTCCACATGATTCATCGTTCCAGCCGTTTTCAGCTTAAGAGGAAACACGAAATAGAAATTACCTCTCGATGTACACACGAAAAGAGAAAAGTAGGTCACATTTATTTGTTAAACTTGCTCAAAAAAGTTTAATTTGATGAATGATAATGTACCGCCAAAGTTGATCTGAATACATGGCTCTCTGGCACCATTGCGGTTATTCGGCTCCCCTTCAGCCCAGCTCTCGTGATCAAATTTGGAGCCGTCACTCCAGAACCATAGCCTGTCCTGTGTGGAAGTAGTGAGATCTCAGTATCAAATGTTACATGCATTTTAGAAATTGTTCAGCAAGCACAACACTCATGGTCTTTCCTCCAACAAAACGGTAAAAGCCACCACTACCAAAACGTGCAGACTGACAATGGAActgttgggtgaaaaaaatacacAAGTGTTGATACTACAACCACATTTCTAGAAATCCCAAAAATAGAAAAAGACAGCTAGTAAGTTGTTTCTGCGCCATAGcaaagaggaagaggcgaagcgagaagGGTAACTAAGCAACTCGTTTTTGTATGGCCGCCAATAAGATGTCGAATTTCATTAACGAAAAACATAATGGCTTATTTGAGCAAATATACGTTTTGTAATGCTTAGGTTGTTACAAGTACTGATACAAGTAGCACACATGACATGCCAGAAACTGAGAAAACCATTTCTCTCGGAATTGTGCCTGTCCCTCGAATCTGCCCGACATTGCAGACTCTTCACATCGTTAGAGGCCAATGGAGTATCTGTGGCAATTGCTCTGGATATTTCGAGATGATCAACTCAAATCTAGACCTACAACCAACAGTATTTATTTTGCTTTTGACAATGACTTCACACGAGGCATAGGTCACATGCCTAAATACTTAAAATCACATATCAGTTTAAAGACATGACATCGGGCCATGTTTTCTTGAATTATGTTTGGTTAAAAGGTAGGCAAGTAACTTCATGCCTACTGTGCCAAAGCAATTTACAGTTATTAAAGTGGGAGTGTGGATATAATGGTAATATCCAAATTCCACGTAGAACTCGAGTTGCGAATGTCAATCTTTCCTCCGCGGTACCTCAAACTGTGGTCATTACCAGCTGAGAAACTGGCGAGTTGATTACTCCTGGCACAGAGTTGTCTGACCAGTGTCTTAACACCTACTCTGAGCTGATGGTTTTATTAGTCTTAAGTATTAAGGCATCTTCACTTTGGGTACCTTTTCCACCTTTGCTTGAACAGCATCAAATCCACCAATCCAGGTAAGAGGGAAACTGCCAGTCGCGACCAACACCACCGCCTGTAGAAATTGGAACTCTTCATAGCTGTGCACAGATGCCAGGTTTGCGCCAAGGTACTTTACAGTGTTGTACACAGGCTTCAGTTTTTCTCCAAGTAACTGACAGTGGCGCTAGAGCAAGCAgtacacagagacaaagacatgTCATAATGGAAGTATTAGTCAGTTGTCCAGTCTGAGAATTTGTCTTCTGGACTCTCAAATATAGGAATTAGTTCATCTCAGTCTTAACCCATGCCTTGAGGGTTCTAATATACAAGAGGGCCCAACTCCACACAATATTGAAAAGCCTATAGAAAATTGCAATTACAGCATATTAAGGGGAGGTTCAGTATTTTACATGAGGCGCCTGTTAAAATAAGGCCAAAGCACCTTTAACTCAAAAAACTAAGTTGACTTCAATTGTAGAAGGTAAGCATTATACCTCTGCATTGGGCCATGTCCTTGCAGTTTTGACAAACATGAAGCAGCGTGAATTAAATTGGAACCAGCCTCTGGGGCATGGGTTTCTTTGGTCTGCTGCAAATCTCACCAAATCATCTGAAAGGAGAAGACAGGGAGGGTTCTGAAATTGCAGCAGACTTTAAAGGATAGTCCAGACTGACCCTTGCATCAAAAATAACATTTGGAGATCAGTCATGCcacactacaacaaaacatacacaATCAATGATGTAAAGcacaaactcattccac

Function

NR:

description
ladderlectin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU827579 False 1101 lncRNA 0.42 4 59676936 59720550
TU827578 True 2794 lncRNA 0.40 5 59682399 59713772

Neighbor

gene id symbol gene type direction distance location
LOC110530237 LOC106568845 coding upstream 465119 59188067 ~ 59211817 (+)
LOC110530235 LOC100136455 coding upstream 592082 59057416 ~ 59084854 (+)
LOC118965657 NA coding upstream 1004261 58672567 ~ 58672675 (+)
LOC110530233 LOC106599529 coding upstream 1026958 58335194 ~ 58649978 (+)
LOC110530232 LOC106568852 coding upstream 1408553 58165647 ~ 58268703 (+)
LOC110530248 crem coding downstream 28118 59748668 ~ 59768093 (+)
LOC110530249 LOC106568835 coding downstream 55180 59775730 ~ 59825064 (+)
LOC110530251 LOC106568834 coding downstream 104747 59825297 ~ 59828412 (+)
LOC110530253 LOC106568832 coding downstream 351583 60072133 ~ 60077499 (+)
LOC110530254 LOC106568831 coding downstream 435792 60156342 ~ 60168950 (+)
G728575 NA non-coding upstream 8490 59667911 ~ 59668446 (+)
G728570 NA non-coding upstream 13247 59663468 ~ 59663689 (+)
G728565 NA non-coding upstream 19488 59657207 ~ 59657448 (+)
G728564 NA non-coding upstream 21682 59655031 ~ 59655254 (+)
G728516 NA non-coding upstream 87304 59589408 ~ 59589632 (+)
G728609 NA non-coding downstream 49895 59770445 ~ 59770650 (+)
G728628 NA non-coding downstream 96713 59817263 ~ 59819000 (+)
G728638 LOC106568833 non-coding downstream 114341 59834891 ~ 59837406 (+)
G728642 NA non-coding downstream 123336 59843886 ~ 59844122 (+)
G728643 NA non-coding downstream 124235 59844785 ~ 59844994 (+)
G728057 LOC100136012 other upstream 695665 58980931 ~ 58981271 (+)
G727348 NA other upstream 1002931 58646859 ~ 58674005 (+)
G727161 NA other upstream 1318801 58357039 ~ 58358245 (+)
LOC118965533 NA other upstream 1823304 57850799 ~ 57854417 (+)
G725907 LOC106581475 other upstream 2121454 57554723 ~ 57555482 (+)
G730206 NA other downstream 1320018 61040568 ~ 61042129 (+)
G730267 NA other downstream 1438260 61158810 ~ 61159193 (+)
G730377 NA other downstream 1649477 61370027 ~ 61810354 (+)
G730425 NA other downstream 1709313 61429863 ~ 61468746 (+)

Expression


Co-expression Network