G728638 (LOC106568833)


Basic Information

Item Value
gene id G728638
gene name LOC106568833
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 59834891 ~ 59837406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU827649
ACAATCTCGTATAGGCCTACATTTTATATACAAATGTACAATGTTTTTACATGAATAATTATATAAATACATTAAACACCAACAAAACCCGTATGAGACAGCATACTTCAAACCATCTTTGCTAAGCAAATTTTACAGGTTAAAATGAGACAACGCCAAGTCTCTCTTTCGAATTAATAAATGGTGTGTTTAAGACAATATGGTTATTTGTAATAAGGAATAGAACAGTAGATATAACCTTGAATTTCCGCCTATCGAAAAATATCACTGTATTGTGTATGTCATTGAACTGGTCCTCAACAGTAAGCATAGAATCACATCTCATTATATTTACATGGTTCTAAACTGGCTGCGGGTCTCATTGAGTAAGAAGAGAAATCATTACGTGCTCGTTAATGTGTTAATTTGAACACGCTGATGGACAATCCCAACATAATTAGATGTCTATTCTTCCTTTTCAAACCCGAGACAATGGCATCTGTTTGGGACAAGAGACAGAGCTCGCAGTGCCAGACCTCCACGTCAGTCCCGTGCTAACGTCACTGTACATTGACCCGCTCGTGGTCTTGCTGGCCCAACAGCAGCGGGTGCAAAATTTCCTCCAGGATTCTAAAGTTTTCCCCGACCAGACCCACGCGCCGGACGTGATGCCAACCAAAAGGCACATGAAATATTTGAGCATGAACACAGCGTAGTCTGGCTTTTGCATTTCATGCTCCGACAAGCAGGAACAGTTATTGGTTATTTCCCAAGTCTGTCTGTTGTGCTGCTCATAGAAGTAACAGGCTACTATAATCGTGGCTGGGACAGTGTAAAGCACTGTAAAAATACCTATTCTGATCATCAGTCTCTCCAACTTGTCTGTTTTCGTCCCTCCTTGCTTTATAACACTCCGGATCCGGAACAGTGACACAAATCCAGCCAGGAGAAACATAGTCCCAATGAACAGATAGATAACCAACGGCGCCAAAACAAAGCCCCTGAGGTTATCCAAGTTCTGATTGCCAACGTAGCATATTCCAGCCACGGGGTCCCCGTCCACTGAACTCAACGCCAACACAGCTATTGATTTCATGCTGGGTATCAGCCAGGCAGCTAAATGAAAATACTGGGAGTAACTGGCTATGGCCTCATTCCCCCACTTCATCCCCGCAGCCAGAAACCAAGTAAgggacagaataacccaccaaataGAACTTGCCATGCCGAAGAAGTAGATGAGTAGAAATACAATGGTACAAAGCGCAGGGCCGGTGGTCTCGTAGTGGATGTGTTCGGTATCATGCTCCATGTTACAAGCCACTTGTTCATGTCCAGCAATTAGTCTGACAATGTAACCGACGGAGACAAACATGTAACAAGCAGAGAGGAAAATAATGGGTCTCTCCGGATATTTGAACCGCTCCATGTCGATTAAGAAAGTTGCCACTGTTGCAAAAGTGGAGATAAAACATAACACGGACCATAGTCCTATCCAAAATGCAGTAAATGTCCTTTCGTCTTGGGAGAAGTAAGGATTGTGGCAGGGCATGGCACAGTTCAGAGTCTGTCCCGTTTTAACTCTGTTATATAGAGGATGACTGTCACTGTTGACTTGAACCATGGGCGCGCGGCAGTGACACCGGGGTTCGCAAGGAGAACTCTGAGGTTTGTGTTTACTAGGAACATTCGAACGCCCGTGTCCATTCTTCTTTCGTGGGTTTATTGGTTTAACGGGGCGGTTTGTGGGCTTTGCAACAACTGGAGAAACAGTCGTTGTCTCGCTTCTGTTATAGTCCATGCACAATGTATCTTGGTTACCCTGCACTGGTAATACATCGCATCTCATTCGGTCTGGCCATGGGAATCCGTACTGCCTCATCAGAGGCGCGCAGCCTGCCTTGGCTCTCTCGCAGACACTCCGACACGGCGGCAGGGGCTTCTTGTAGTCCTCCAGGCAAATAGGAGTGTACATGCTACAGAGAAAGAACTTAAGGTCCGGAGAACACTTGATTTCCACCAGGGGCCAAAACTGGTGCACCTCCAGCCCTGCCTCGTCCTGTGTGTCGTGATTGAACTGGTTGGGCATGTAGGTGTAGTTGTAGCCGATTCCTTTGCATAGAGGCACGGATATCTCCTGGCATTGTAGCTCCTTCGCCGCGGCGCAGCTCGACCTGTGTAGAACGAGTGCAAAAAGCATGCACCACCCCAGCAGCTGGCACTCCATCCTCATTCACTGTTGAATTCGTCTGCTTCAAAGTGCCAGCGAACTTGCGCTTGCAAGTAGGCTGTAGAGTCCGATTATTCCAGAGATGCGGGTAAACTCATCCTTGGCGCAGACGGTGTTTTTGAAGATAAGCAAGCCTTCGGGTGTCTTCTGGCTGGTATAATGTTAGGGAATCCACACATCACATCGTTTATTCTCTGTTTACgttattttgtaaaaaaaactaCCACTCTTCTCCGTCTGCTGTGGACTGTTGACTGACAGAATATAATTTACGCACCGATATCTCCATTTGGCACCACCGTTAATC

Function

NR:

description
frizzled-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU827649 True 2516 lncRNA 0.46 1 59834891 59837406

Neighbor

gene id symbol gene type direction distance location
LOC110530251 LOC106568834 coding upstream 6479 59825297 ~ 59828412 (+)
LOC110530249 LOC106568835 coding upstream 9827 59775730 ~ 59825064 (+)
LOC110530248 crem coding upstream 66798 59748668 ~ 59768093 (+)
LOC110530237 LOC106568845 coding upstream 623074 59188067 ~ 59211817 (+)
LOC110530235 LOC100136455 coding upstream 750037 59057416 ~ 59084854 (+)
LOC110530253 LOC106568832 coding downstream 234727 60072133 ~ 60077499 (+)
LOC110530254 LOC106568831 coding downstream 318936 60156342 ~ 60168950 (+)
LOC110530256 LOC106568829 coding downstream 394905 60232311 ~ 60268663 (+)
LOC110530260 LOC106568826 coding downstream 483552 60320958 ~ 60346708 (+)
LOC110530261 LOC106568825 coding downstream 516532 60353938 ~ 60597494 (+)
G728628 NA non-coding upstream 15891 59817263 ~ 59819000 (+)
G728609 NA non-coding upstream 64241 59770445 ~ 59770650 (+)
G728583 NA non-coding upstream 100355 59689483 ~ 59734536 (+)
G728584 NA non-coding upstream 100558 59682037 ~ 59734333 (+)
G728580 NA non-coding upstream 114341 59676936 ~ 59720550 (+)
G728642 NA non-coding downstream 6480 59843886 ~ 59844122 (+)
G728643 NA non-coding downstream 7379 59844785 ~ 59844994 (+)
G728647 NA non-coding downstream 13704 59851110 ~ 59851391 (+)
G728648 NA non-coding downstream 16797 59854203 ~ 59854520 (+)
G728649 NA non-coding downstream 17723 59855129 ~ 59855396 (+)
G728057 LOC100136012 other upstream 853620 58980931 ~ 58981271 (+)
G727348 NA other upstream 1160886 58646859 ~ 58674005 (+)
G727161 NA other upstream 1476756 58357039 ~ 58358245 (+)
LOC118965533 NA other upstream 1981259 57850799 ~ 57854417 (+)
G730206 NA other downstream 1203162 61040568 ~ 61042129 (+)
G730267 NA other downstream 1321404 61158810 ~ 61159193 (+)
G730377 NA other downstream 1532621 61370027 ~ 61810354 (+)
G730425 NA other downstream 1592457 61429863 ~ 61468746 (+)
G730447 NA other downstream 1629947 61467353 ~ 61468047 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000070_01822353_01824092 FZD8A, FZD8, FZD8.S, FZD8.L coding CI01000070 null 1822220 ~ 1824599 (+)