XLOC_026336 (xpnpep3)


Basic Information

Item Value
gene id XLOC_026336
gene name xpnpep3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25059502 ~ 25086986 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051353
GATCATGCTTACAGTTACATCTTCAGTGAGGAGTGGAACTTGCATGTGGTGGTTCCTTCAGCATGTTACCTTTAGGTTAACCTTTTGGTTTGCAGTTTTTAATTCGCACGAGTGTGCAAACGTACTCTACCTCATGTTAAAAGTATACGGCTCCGTTCAGCTGACCGGGGATTTAAAGCGACGATGTTTCATTCCAGTAGCGGTTTACTAAGAGCTGCCGTCCAGTGCGCTTCACGATCTTACTGGAGTCCTGggTCTGTGTGGTGTCCATGCAGGCATGTGTCTGTGAAAACAGAGGGATGGAATTCAAAGAAAGTTCCTCAGAGATACCTGGGTCAGCCCAGTCCATACACACACCCTCACCTCATCCGACACGGTGAGGTAACGCCAGGTCTCACCCAGACAGAGTATGAGCTTCGTCGGCAGCGTTTAGCATCTCTGATTGAGATTCAGGCAGAGCGACAAACAGGTTCTGGAGCCTCTTCAAACTCCTCCCACATTGTCATCATCCTATCGCATCCAATTCGCTACATGAGCAATGACATCCCTTACCCGTTCCACCAGAACCAGGATTTCCTGTACCTGACAGGAATTACGGAGCCGGATAGTGCACTGGTCATGTACGGATCAAGTAAACCAGACCAGGCTGTGCTGTTTGTCCCACGCCGAGACCCAGCCCGAGAGCTTTGGGATGGACCTCGTTCTGGCAAAGATGGTGCAGCTGCTTTAACAGGTCTCGAGCGGGTTCACAGTACTGAAGAACTGGGTGTAGTGCTAAAAAGCATAAAAGGAGGAACTGTATGGTATGACAACTCTCAGCCTTGTCATCCACGGTTACATCAAACTCATGTGCGCCCCCTGTTGGAAGGAGGACAGCTGGTGAAGTCTCTCCGACCCCTCACTCATTCCCTCAGAGCCATTAAGAGCCCAGCAGAGGTTGCACTGATGAAAGAGGCAGGACGGATCACTGCTCAGGCATTTAAAAAGACAATGGCTATGTCAAGAGGAAACATTGATGAGGCTGTTCTCTATGCAAAGTTTGATTATGAATGCCGTGCTCATGGTGCTAACTTCCTGGCATATCCGCCTGTGGTTGCTGGTGGAAACAGGGCAAACACACTTCATTACATCAACAACAATCAAATAGTGAAGgatgGAGAAATGGTCCTGTTGGATGGGGGCTGTGAATATTTCGGCTATGTGAGCGACATCACACGCACTTGGCCGGTGAATGGAAaGTTCAGTGCTGCTCAGAGGGAGCTCTATGAGGCTGTGCTGGAGGTGCAGTTGGCCTGTCTGTCTCAATGCAGTCCTGGCGTCAGTCTAGACTACATATACTCCACCATGCTCACACTGCTCGCCCGGCAACTCAAAGAGCTCGGTATCCTTCCATCACATGCCAGTGATACAGATGCAATGAAGGCTGCTCGACAGTTTTGCCCTCATCACGTGGGTCACTATCTGGGCATGGATGTTCACGACACTCCTGAACTTTCACGTTCACAACCACTGCAGCCTGGCATGGTGATCACAATAGAACCAGGACTGTACATCAGCGAGGACAACAGGTCCTGTCCTGAGCGATTCAGGGGTCTTGGGGTGCGAATTGAGGATGACGTGGTGATCCGAGACCACGGTGGACCCCTCATTCTGTCCGCAAACACCCCAAAAACCATCAGTGAGGTGGAGAGAACTTGTGCACATGCAGAAGACTGAAAGCAAACACACAGCAAGTCCTTTAAGAACGAGTCTGTTTCTCCAGTCTTTAACACCTCCTCTTGTAGGATTTTCTTTAATAGTGAACTCAGGAAGTCTGGATTTCACAGAACGTGTGTTAAATCTGGAGGATTAGGAGCCGGATGTGTTTGGACAGCGTGCATGGTTTTCCTGATAGCCAGTTCACTTCTACAGCAGCAGTGTTATGTGTTTGACCTGCACACCTAAGATCTGGGATCAGGGTTTATAGGAGACTTTAAAAGAGGTCAGAGAGAGAAGCGTCTGTGATTTATTGAGCATGATgaacaatttatttgtttgtgagtGAATTGAGTTTCTTTAAATGTTTGATTCCTGAGGTTTTTATTGTCATAAATGTCTTTTTTGACAGAAAAATAAATCTCTAGTTCTTAA
>TCONS_00051354
GAACTTGCATGTGGTGGTTCCTTCAGCATGTTACCTTTAGGTTAACCTTTTGGTTTGCAGTTTTTAATTCGCACGAGTGTGCAAACGTACTCTACCTCATGTTAAAAGTATACGGCTCCGTTCAGCTGACCGGGGATTTAAAGCGACGATGTTTCATTCCAGTAGCGGTTTACTAAGAGCTGCCGTCCAGTGCGCTTCACGATCTTACTGGAGTCCTGggTCTGTGTGGTGTCCATGCAGGCATGTGTCTGTGAAAACAGAGGGATGGAATTCAAAGAAAGTTCCTCAGAGATACCTGGGTCAGCCCAGTCCATACACACACCCTCACCTCATCCGACACGGTGAGGTAACGCCAGGTCTCACCCAGACAGAGTATGAGCTTCGTCGGCAGCGTTTAGCATCTCTGATTGAGATTCAGGCAGAGCGACAAACAGAACCAGGATTTCCTGTACCTGACAGGAATTACGGAGCCGGATAGTGCACTGGTCATGTACGGATCAAGTAAACCAGACCAGGCTGTGCTGTTTGTCCCACGCCGAGACCCAGCCCGAGAGCTTTGGGATGGACCTCGTTCTGGCAAAGATGGTGCAGCTGCTTTAACAGGTCTCGAGCGGGTTCACAGTACTGAAGAACTGGGTGTAGTGCTAAAAAGCATAAAAGGAGGAACTGTATGGTATGACAACTCTCAGCCTTGTCATCCACGGTTACATCAAACTCATGTGCGCCCCCTGTTGGAAGGAGGACAGCTGGTGAAGTCTCTC

Function

symbol description
xpnpep3 Predicted to enable aminopeptidase activity. Acts upstream of or within gastrulation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nephronophthisis-like nephropathy 1. Orthologous to human XPNPEP3 (X-prolyl aminopeptidase 3).

GO:

id name namespace
GO:0007369 gastrulation biological_process
GO:0006508 proteolysis biological_process
GO:0005739 mitochondrion cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2076 Predicted to enable aminopeptidase activity. Acts upstream of or within gastrulation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nephronophthisis-like nephropathy 1. Orthologous to human XPNPEP3 (X-prolyl aminopeptidase 3).

Ensembl:

ensembl_id ENSDARG00000007916

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051353 False 2130 mRNA 0.48 10 25059502 25086986
TCONS_00051354 True 761 processed_transcript 0.50 5 25079449 25086951

Neighbor

gene id symbol gene type direction distance location
XLOC_026335 ep300b coding downstream 3707 24996930 ~ 25055795 (-)
XLOC_026334 desi1a coding downstream 79435 24973025 ~ 24980067 (-)
XLOC_026333 CABZ01050944.1 coding downstream 150257 24793921 ~ 24909245 (-)
XLOC_026332 BX569789.2 coding downstream 313621 24745766 ~ 24745881 (-)
XLOC_026331 BX569789.1 coding downstream 378098 24675029 ~ 24681404 (-)
XLOC_026337 rbx1 coding upstream 14974 25101960 ~ 25107802 (-)
XLOC_026338 chadla coding upstream 21982 25108968 ~ 25119839 (-)
XLOC_026339 BX470254.1 coding upstream 45034 25132020 ~ 25135109 (-)
XLOC_026340 mief1 coding upstream 49167 25136153 ~ 25148047 (-)
XLOC_026341 mgat3a coding upstream 150413 25237399 ~ 25268751 (-)
XLOC_026329 CR790377.1 non-coding downstream 656233 24403149 ~ 24403269 (-)
XLOC_026325 CR751227.3 non-coding downstream 1241456 23817922 ~ 23818046 (-)
XLOC_026324 NA non-coding downstream 1315223 23740351 ~ 23744279 (-)
XLOC_026323 BX927395.1 non-coding downstream 1371215 23686198 ~ 23688287 (-)
XLOC_026348 NA non-coding upstream 595898 25682884 ~ 25701218 (-)
XLOC_026350 NA non-coding upstream 853222 25940208 ~ 25950390 (-)
XLOC_026351 NA non-coding upstream 864239 25951225 ~ 25974082 (-)
XLOC_026352 NA non-coding upstream 897648 25984634 ~ 25988334 (-)

Expression


Co-expression Network