XLOC_026337 (rbx1)


Basic Information

Item Value
gene id XLOC_026337
gene name rbx1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25101960 ~ 25107802 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00051355
ACTCTTTCTCGCGAGATCATCAGACATTAGCAAACATGGCGGCCGCGATGGATGTGGACACCCCAAGTGGAGCTAACAGCGGAGCCAGTAAAAAGCGATTTGAAGTGAAAAAGTGGAACGCTGTGGCTCTGTGGGCATGGGACATTGTAGTGGACAACTGTGCCATCTGCAGAAATCACATTATGGACCTCTGTATTGAGTGTCAGGCCAATCAGGCGTCTGCCACCTCAGAGGAGTGTACGGTGGCCTGGGGAGTCTGCAATcaCGCTTTTCATTTCCACTGCATCTCCCGCTGGCTGAAGACCAGACAAGTGTGTCCACTGGACAACAGAGAGTGGGAGTTTCAGAAGTATGGTCATTAGACGTGTATCTGCAGATCTGTGTTTGTGTTCCCTTCCAAGATGTCCTTTCCTGAGCTCCATCACAATTTCTCCCTGTTGAAGACTAGCCGGTCTAAATTGGAATActagttatgatttttttttttatttctgtgctGTGTGCAGGATTCAGTGATGCAAATTATCAATAAATTCCCTCTAAATCAA
>TCONS_00051356
gtaggtttcaaacaagcctgaaggactctattagtttgatcagTGGAACGCTGTGGCTCTGTGGGCATGGGACATTGTAGTGGACAACTGTGCCATCTGCAGAAATCACATTATGGACCTCTGTATTGAGTGTCAGGCCAATCAGGCGTCTGCCACCTCAGAGGAGTGTACGGTGGCCTGGGGAGTCTGCAATcaCGCTTTTCATTTCCACTGCATCTCCCGCTGGCTGAAGACCAGACAAGTGTGTCCACTGGACAACAGAGAGTGGGAGTTTCAGAAGTATGGTCATTAGACGTGTATCTGCAGATCTGTGTTTGTGTTCCCTTCCAAGATGTCCTTTCCTGAGCTCCATCACAATTTCTCCCTGTTGAAGACTAGCCGGTCTAAATTGGAATActagttatgatttttttttttatttctgtgctGTGTGCAGGATTCAGTGATGCAAATTATCAATAAATTCCCTCTAAA

Function

symbol description
rbx1 Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human RBX1 (ring-box 1).

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component
GO:0097602 cullin family protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum
ko04120 Ubiquitin mediated proteolysis
ko03420 Nucleotide excision repair
ko04310 Wnt signaling pathway
ko04341 Hedgehog signaling pathway - fly
ko04350 TGF-beta signaling pathway
ko04066 HIF-1 signaling pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04114 Oocyte meiosis
ko04710 Circadian rhythm
ko05200 Pathways in cancer
ko05211 Renal cell carcinoma
ko05170 Human immunodeficiency virus 1 infection
ko05131 Shigellosis
ko04121 Ubiquitin system
ko03400 DNA repair and recombination proteins

ZFIN:

id description
ZDB-GENE-041008-106 Predicted to enable cullin family protein binding activity and ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be part of cullin-RING ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in female organism. Orthologous to human RBX1 (ring-box 1).

Ensembl:

ensembl_id ENSDARG00000038030

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00051355 False 548 mRNA 0.47 5 25101960 25107802
TCONS_00051356 True 474 mRNA 0.46 5 25101964 25106878

Neighbor

gene id symbol gene type direction distance location
XLOC_026336 xpnpep3 coding downstream 14974 25059502 ~ 25086986 (-)
XLOC_026335 ep300b coding downstream 46165 24996930 ~ 25055795 (-)
XLOC_026334 desi1a coding downstream 121893 24973025 ~ 24980067 (-)
XLOC_026333 CABZ01050944.1 coding downstream 192715 24793921 ~ 24909245 (-)
XLOC_026332 BX569789.2 coding downstream 356079 24745766 ~ 24745881 (-)
XLOC_026338 chadla coding upstream 1166 25108968 ~ 25119839 (-)
XLOC_026339 BX470254.1 coding upstream 24218 25132020 ~ 25135109 (-)
XLOC_026340 mief1 coding upstream 28351 25136153 ~ 25148047 (-)
XLOC_026341 mgat3a coding upstream 129597 25237399 ~ 25268751 (-)
XLOC_026342 ddx5 coding upstream 162059 25269861 ~ 25275403 (-)
XLOC_026329 CR790377.1 non-coding downstream 698691 24403149 ~ 24403269 (-)
XLOC_026325 CR751227.3 non-coding downstream 1283914 23817922 ~ 23818046 (-)
XLOC_026324 NA non-coding downstream 1357681 23740351 ~ 23744279 (-)
XLOC_026323 BX927395.1 non-coding downstream 1413673 23686198 ~ 23688287 (-)
XLOC_026348 NA non-coding upstream 575082 25682884 ~ 25701218 (-)
XLOC_026350 NA non-coding upstream 832406 25940208 ~ 25950390 (-)
XLOC_026351 NA non-coding upstream 843423 25951225 ~ 25974082 (-)
XLOC_026352 NA non-coding upstream 876832 25984634 ~ 25988334 (-)

Expression


Co-expression Network