XLOC_002634 (plac8.1)


Basic Information

Item Value
gene id XLOC_002634
gene name plac8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11382365 ~ 11385155 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004899
CACAGAGGAATATctgacgcaaaaaaaaaaaaacagATCATGGAGGTGACATCTCAACCGTCGGCGTTTCATCCCCAAGAATTTCACTCAGGCTTGATGAGCTGCTGTGATGACGTGGGCGTATGTTGTTGTGGCCTTTTCTGTCTCCCGTGTATGGGCTGTTCCATCGCCAGTGACATGAACGAGTGCTGCTTGTGCGGTTTAGGCATGCCGATGAGGAGTGTATACAGAACTAAATACAACATAGAGGGATCCATGTGCAATGACTGGGCTGCCACTACCTTCTGCTTTACCTGTGCGGCCTGTCAGCTTAAGAGAGACATCGACATTAGAAAGAGTAACGGCACGCTGAAATTATGAAAACTGGAAAAGAGCACTACAATTTTTAACTAATAAGTACTTAAATGCTGCTCTAGAAAATATGAGATCAAAGAAAGATGAAGGGGTCAGTCATTTGATAAGTAAGGAAGAGTTTAATTCAGCTAAGTAAAATacattgtacagtatttgtgCATGCAGTTCGTAATTTTCCTATTTGGAAACTGTTCATTCAAAgttatattgtcattattatttaaatgtactttaaataaatTTTCACATTTTCCAAGAAGTGTATAGCATTGCAGAGTTGCAGTGTGTTATGTCTGTGCATTGTCTGTTAACATTttgacacgttttttttttttttttgctaaactcTTCCAATCTCAGTCCCTGCTTCATCAGGGGTcgacagtagaatgaaccacccatCACTCAATCTAACTAATAAATATTTCATGAATGTGA
>TCONS_00004900
ATGGAGGTGACATCTCAACCGTCGGCGTTTCATCCCCAAGAATTTCACTCAGGCTTGATGAGCTGCTGTGATGACGTGGGCGTATGTTGTTGTGGCCTTTTCTGTCTCCCGTGTATGGGCTGTTCCATCGCCAGTGACATGAACGAGTGCTGCTTGTGCGGTTTAGGCATGCCGATGAGGAGTGTATACAGAACTAAATACAACATAGAGGGATCCATGTGCAATGACTGGGCTGCCACTACCTTCTGCTTTACCTGTGCGGCCTGTCAGCTTAAGAGAGACATCGACATTAGAAAGAGTAACGGCACGCTGAAATTATGA

Function

symbol description
plac8.1 Predicted to be involved in positive regulation of transcription by RNA polymerase II. Is expressed in gut. Orthologous to human PLAC8 (placenta associated 8).

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-124 Predicted to be involved in positive regulation of transcription by RNA polymerase II. Is expressed in gut. Orthologous to human PLAC8 (placenta associated 8).

Ensembl:

ensembl_id ENSDARG00000043729

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004899 False 792 mRNA 0.39 4 11382365 11385155
TCONS_00004900 True 321 mRNA 0.50 3 11382797 11383900

Neighbor

gene id symbol gene type direction distance location
XLOC_002633 plac8.2 coding downstream 5874 11371961 ~ 11376491 (-)
XLOC_002632 lin54 coding downstream 28896 11324515 ~ 11353469 (-)
XLOC_002631 inip coding downstream 59231 11319971 ~ 11323134 (-)
XLOC_002630 ptbp3 coding downstream 120800 11146321 ~ 11261565 (-)
XLOC_002629 ak3 coding downstream 370365 11000894 ~ 11012000 (-)
XLOC_002635 srek1ip1 coding upstream 9373 11394528 ~ 11397590 (-)
XLOC_002636 adamts6 coding upstream 208843 11593998 ~ 11764439 (-)
XLOC_002637 trim23 coding upstream 405726 11790881 ~ 11840353 (-)
XLOC_002638 NA coding upstream 510218 11895373 ~ 11898575 (-)
XLOC_002639 CT990561.2 coding upstream 1263275 12648430 ~ 12652512 (-)
XLOC_002626 NA non-coding downstream 594716 10784334 ~ 10787649 (-)
XLOC_002625 NA non-coding downstream 668138 10712178 ~ 10714227 (-)
XLOC_002623 BX323065.1 non-coding downstream 1049938 10319308 ~ 10332427 (-)
XLOC_002621 NA non-coding downstream 1093682 10261345 ~ 10288683 (-)
XLOC_002642 NA non-coding upstream 1913684 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 non-coding upstream 1919910 13305065 ~ 13305183 (-)
XLOC_002646 BX293994.2 non-coding upstream 2221872 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 non-coding upstream 2226978 13612133 ~ 13612248 (-)

Expression


Co-expression Network