G730813 (LOC106569067)


Basic Information

Item Value
gene id G730813
gene name LOC106569067
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 62068134 ~ 62070889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU830049
CCTAAATACTAAATAACCTCAACATAAAACTACATTGCGGAGTAGACTGGAGTAGATTCATGAGAAACACTGTCATAGTGTTCTGTACATTGCATTGGCGGAAATGAGTCAGCATGACATTCAATACAATCACACAATCAACTGAAAGAGTTCCCGTAATTATTTTTTATTACTTCAATGTTACGATTGAATTTACAGGCACTTGGGTAACAAGCTGGGTTCTCTCGGGTCCTTACAAATGAAATGTTTCAGTGACTAGGTgctttgtattgtattgtactgtacgaCAGAACAGAAGATGCACTCCATAGCCAAAAGACCACAAACGGATTGTGCAACACATACATATCATCATCTACGGgaacaaaataatacaaatacttgAGACATTATAAATTAGAAATACTGTTTTATACATCCAACAGTATGTGCTGCACATCCGTCCACAGCAGCGTGGTTACCTGGAGGAGTAATAGAGGGTAAAAGATGGTTCACTGCAGAGGAGATCGTTTTAGTCCCCGCCACACCATCTATAAAATTAGGTCAAAAGTTAGCTAAACAAAACTATCAAACAGATAACATGATAGAAGGCTAAGGAAAGGAGTGAGTATTGGTGTATTGAGGATATGAGCGATGTTGAATTGGAACTGGGAAAGACGAGTCGTTTCCAGGTTACAACCTATTAATTTACTGTATGGAGGCTGGCTGACTGATGTTCTGGACCCGTCGACAAAATCCCTGCTGTTCTCCTGAAATGCAAGGACACCATGTAGTGTATGTCTGAAATGTAATGCAACGTGTGCAATACACGTGATGCCCTCGTTAGGGACTAAGTGATGTGAAAATGACAATCACATAGTAAGgcacaaaacacacaaaaaaaaaaaaattggttaaCTAGCAACTTGTGACCAATCTTATTTTCTTGGAGACAAGCGTATAAATTCAGTCAAATGAAACATTAGGCTTAATGTAGACAAATGGCTTCTTTAGGGCcatcccttacacacacacacacacacacacacacacacacaccctgatctTGTCAGTCAAAGGTTCTTGTTATAAAAGCATTCATCAATTAACTTGTGACCACCCACTGAGAagtaaacaaatgaataatgtCAGCGCTATGAGGCAACAACACTGAGCCCTGTATACAAGCAAGCATATTATACCACAGAACTtatcatatatatttatatattatgtgGAGGTTTCAGTTGATTGTTTTTGTGATAGAACCTATAGGAGGTGGCTGTTGGGTCTTGGGTTTAACAATCAGCCAGCCCTGAATCATTTAAGCATATATTTACACAAATAACAGTTCCTCACTCTTCATCAGAATAAAAAAACATTCACacaaaaatataacatttgaaatcaTTATTAGCACCAGTGTATCAGATAAAGTCTTGCTACGCAAATGTACAAAGTTGCATAGTGTAGAATGTTGCCTTGTAGTGTAGAATGTTAATGTGTGATTTGCAGCAAACCTGTATTAAGCAGCAGCTTCGGGAGGAAAAAacaaactaaaatcatgatttgtAGTGTTAAAATAAATGATTCAAATGATATTTAACCATGATGTTTCACTGGGCAGTCTCAACTGGCAAACTTATCAGAGACATTTTAAAAGACCCACAAGCTGGTTTCATTCGACAGCTTTTCAGTTGTGCATGTGGAACAGAATAGTTGTGTTGAATACTGTAAAAATGTATAATAGTAACAGGAATACTTTCTCCATGCAAGACATGTAGCTTTGGGAGCGAATGGAGGCAAATCAAACAGAAACTTAAGGATTCCTTCAcggtttgtttaaaaaaaataaatggttgATAACACAGAGGGTGGTACATATGCATTGAAAGTTTCGCAATACCTCCaagcaaaaaaatatacatttcacAGACAAACCATTCCCAACATGCCCTTGGGTCTAAAATGATGGGTAAGGATAACTTGTTTGACACCATATCAGATTAAAAAAAGGTATATAATATGACACAGACGCATCTGAAAAGGCTGAGGACATTTTTCCTTGTTTTCTCTGTTGATGTGGTTTAGGTTGTGATTCCTCCACGTCGTAGCGTAGGAACAGTCTGGAGGTGGTGCAGTCATGTGGGTGTTCTGGAGTGAGGTAAGCCACacctctcctaacctgctgcaccTAAGGAGAATGGATACGCGGTTTTTAACGACCGCCCTTAGTTAATTTCAGGTTCTGCCGCTTATGCTCTTCATTTCTTTAAAAACATGAAACTTGGCTTAAATTGGCTTCTTGCTTAAAAAAAGACAAACAAAAGACCAAAAAAATACAAACTGTTTTGGTAAAACGGTGGCATTCTGCCCGAGTGTTAGATGTGGGAAGGAGTGGTACAGACGGGATATGAGGAAGGGTACAGGGGTTGGGATAGGAGTCGAGGGCGGAGATAGAGGGGGTTAAGCCCGTTCTATGGATGGGGTGTTGAAGCAGCCGTTGGGTAACGTGTTCTTGATGTCGTTGAGGTTGGCGATGTCAGACTGGATCTCCTTGATCTGCCTATCGTAGTCGGTGATCATCACTTCCTGGCTCTTGGCCACGTCGTTCAGCTCCGACAGCTTGCGGTCCAGGTCGCTGTTCGCCATCTTGTCTTTGGCCTGCTTCAGCGACCCCTCAATCAAGCCCAGCTTGCTCAGGTCCACCTTG
>TU830050
CCTAAATACTAAATAACCTCAACATAAAACTACATTGCGGAGTAGACTGGAGTAGATTCATGAGAAACACTGTCATAGTGTTCTGTACATTGCATTGGCGGAAATGAGTCAGCATGACATTCAATACAATCACACAATCAACTGAAAGAGTTCCCGTAATTATTTTTTATTACTTCAATGTTACGATTGAATTTACAGGCACTTGGGTAACAAGCTGGGTTCTCTCGGGTCCTTACAAATGAAATGTTTCAGTGACTAGGTgctttgtattgtattgtactgtacgaCAGAACAGAAGATGCACTCCATAGCCAAAAGACCACAAACGGATTGTGCAACACATACATATCATCATCTACGGgaacaaaataatacaaatacttgAGACATTATAAATTAGAAATACTGTTTTATACATCCAACAGTATGTGCTGCACATCCGTCCACAGCAGCGTGGTTACCTGGAGGAGTAATAGAGGGTAAAAGATGGTTCACTGCAGAGGAGATCGTTTTAGTCCCCGCCACACCATCTATAAAATTAGGTCAAAAGTTAGCTAAACAAAACTATCAAACAGATAACATGATAGAAGGCTAAGGAAAGGAGTGAGTATTGGTGTATTGAGGATATGAGCGATGTTGAATTGGAACTGGGAAAGACGAGTCGTTTCCAGGTTACAACCTATTAATTTACTGTATGGAGGCTGGCTGACTGATGTTCTGGACCCGTCGACAAAATCCCTGCTGTTCTCCTGAAATGCAAGGACACCATGTAGTGTATGTCTGAAATGTAATGCAACGTGTGCAATACACGTGATGCCCTCGTTAGGGACTAAGTGATGTGAAAATGACAATCACATAGTAAGgcacaaaacacacaaaaaaaaaaaaattggttaaCTAGCAACTTGTGACCAATCTTATTTTCTTGGAGACAAGCGTATAAATTCAGTCAAATGAAACATTAGGCTTAATGTAGACAAATGGCTTCTTTAGGGCcatcccttacacacacacacacacacacacacacacacaccctgatctTGTCAGTCAAAGGTTCTTGTTATAAAAGCATTCATCAATTAACTTGTGACCACCCACTGAGAagtaaacaaatgaataatgtCAGCGCTATGAGGCAACAACACTGAGCCCTGTATACAAGCAAGCATATTATACCACAGAACTtatcatatatatttatatattatgtgGAGGTTTCAGTTGATTGTTTTTGTGATAGAACCTATAGGAGGTGGCTGTTGGGTCTTGGGTTTAACAATCAGCCAGCCCTGAATCATTTAAGCATATATTTACACAAATAACAGTTCCTCACTCTTCATCAGAATAAAAAAACATTCACacaaaaatataacatttgaaatcaTTATTAGCACCAGTGTATCAGATAAAGTCTTGCTACGCAAATGTACAAAGTTGCATAGTGTAGAATGTTGCCTTGTAGTGTAGAATGTTAATGTGTGATTTGCAGCAAACCTGTATTAAGCAGCAGCTTCGGGAGGAAAAAacaaactaaaatcatgatttgtAGTGTTAAAATAAATGATTCAAATGATATTTAACCATGATGTTTCACTGGGCAGTCTCAACTGGCAAACTTATCAGAGACATTTTAAAAGACCCACAAGCTGGTTTCATTCGACAGCTTTTCAGTTGTGCATGTGGAACAGAATAGTTGTGTTGAATACTGTAAAAATGTATAATAGTAACAGGAATACTTTCTCCATGCAAGACATGTAGCTTTGGGAGCGAATGGAGGCAAATCAAACAGAAACTTAAGGATTCCTTCAcggtttgtttaaaaaaaataaatggttgATAACACAGAGGGTGGTACATATGCATTGAAAGTTTCGCAATACCTCCaagcaaaaaaatatacatttcacAGACAAACCATTCCCAACATGCCCTTGGGTCTAAAATGATGGGTAAGGATAACTTGTTTGACACCATATCAGATTAAAAAAAGGTATATAATATGACACAGACGCATCTGAAAAGGCTGAGGACATTTTTCCTTGTTTTCTCTGTTGATGTGGTTTAGGTTGTGATTCCTCCACGTCGTAGCGTAGGAACAGTCTGGAGGTGGTGCAGTCATGTGGGTGTTCTGGAGTGAGGTAAGCCACacctctcctaacctgctgcaccTAAGGAGAATGGATACGCGGTTTTTAACGACCGCCCTTAGTTAATTTCAGGTTCTGCCGCTTATGCTCTTCATTTCTTTAAAAACATGAAACTTGGCTTAAATTGGCTTCTTGCTTAAAAAAAGACAAACAAAAGACCAAAAAAATACAAACTGTTTTGGTAAAACGGTGGCATTCTGCCCGAGTGTTAGATGTGGGAAGGAGTGGTACAGACGGGATATGAGGAAGGGTACAGGGGTTGGGATAGGAGTCGAGGGCGGAGATAGAGGGGGTTAAGCCCGTTCTATGGATGGGGTGTTGAAGCAGCCGTTGGGTAACGTGTTCTTGATGTCGTTGAGGTTGGCGATGTCAGACTGGATCTCCTTGATCTGCCTATCGTAGTCGGTGATCATCACTTCCTGGCTCTTGGCCACGTCGTTCAGCTCCGACAGCTTGCGGTCCAGGTCGCTGTTCGCCATCTTGTCTTTGGCCTGCTTCAGCGACCCCTCAATCAAGCCCAGCTTGCTCAGGTCCACCTTG

Function

NR:

description
laminin subunit gamma-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU830049 False 2692 lncRNA 0.40 2 62068134 62070889
TU830050 True 2690 lncRNA 0.40 2 62068134 62070889

Neighbor

gene id symbol gene type direction distance location
LOC110530301 LOC106569066 coding upstream 21957 62034615 ~ 62046177 (+)
LOC110530952 LOC106569062 coding upstream 692670 61370585 ~ 61375464 (+)
LOC118965539 NA coding upstream 723249 61343405 ~ 61348640 (+)
LOC110530280 LOC106569045 coding upstream 728522 61327148 ~ 61339612 (+)
LOC110530279 armc1 coding upstream 762456 61297688 ~ 61305678 (+)
LOC110530305 klhl20 coding downstream 217681 62288570 ~ 62299158 (+)
LOC110530308 LOC100380755 coding downstream 550356 62621245 ~ 62881609 (+)
LOC110530310 LOC106569074 coding downstream 900670 62971559 ~ 63003590 (+)
LOC110530311 LOC106569075 coding downstream 988635 63059524 ~ 63187183 (+)
LOC118965541 LOC106569076 coding downstream 1117544 63188433 ~ 63206250 (+)
G730821 NA non-coding upstream 565 62067204 ~ 62067569 (+)
G730819 NA non-coding upstream 2077 62065831 ~ 62066057 (+)
G730818 NA non-coding upstream 2322 62065524 ~ 62065812 (+)
G730761 NA non-coding upstream 18188 62032384 ~ 62049946 (+)
G730752 NA non-coding upstream 87444 61957389 ~ 61980690 (+)
G730852 NA non-coding downstream 46686 62117575 ~ 62119475 (+)
G730987 NA non-coding downstream 230943 62301832 ~ 62303132 (+)
G731993 NA non-coding downstream 290748 62361637 ~ 62361989 (+)
G731995 NA non-coding downstream 292210 62363099 ~ 62363301 (+)
G732004 NA non-coding downstream 299421 62370310 ~ 62370540 (+)
G730694 LOC106569104 other upstream 196574 61867561 ~ 61874667 (+)
G730690 NA other upstream 207015 61860485 ~ 61861119 (+)
G730629 NA other upstream 252524 61815071 ~ 61815610 (+)
G730590 NA other upstream 371493 61696147 ~ 61696641 (+)
G730464 NA other upstream 438941 61628553 ~ 61629193 (+)
G732052 NA other downstream 332060 62402949 ~ 62404191 (+)
G732350 NA other downstream 726812 62797701 ~ 62882948 (+)
LOC110530316 LOC106569082 other downstream 1304607 63375496 ~ 63430577 (+)
G733571 LOC106569085 other downstream 1476698 63547587 ~ 63548743 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G14087 NA non-coding NC_053113.1 CM020910.1 3570102 ~ 3571280 (+)
tiger barb (Puntius tetrazona) G12658 lamc1,LOC107678923,LOC107726890,LOC107557259,LOC107722047 unknown NC_056700.1 CM032069.1 16671576 ~ 16673710 (-)