G733180 (LOC106569080)


Basic Information

Item Value
gene id G733180
gene name LOC106569080
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63290968 ~ 63293802 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU832636
ttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatatatccacagtaaaaacaagtccaatatcgacattacctgaaaggtcgctcagcaaggaagaagccgctgctccaaaactgaagatcgtaccttttggagaaatgtcctctgatatgatgaaacaaaaatagaactgtttggccatattgaccattgTTATATTTTAAGGAAAAATTAGGCTTGCAagccggagaacaccatcccaactgtgaagcacgggggtggcagcaagatgttgtgggggtgctttactgtaggagggactggtgcacttcacaaaatagtagGCATCAtgagggaaaattatgtgaatatattgaagcaacataaccctcaagacatcagtcaggaagttaaagcttggtcgcaaatggcaaAATggcaaaaaggacaacaaagtcaaggtattagagtggccatcacaaagtcctgacctcaatcttattgaaaatttgtgggcataactgaaaaagtgtgtgcgagcaaggaggcctacaaacctgactcagttgcaccaactctgtcaggaggaatgagtgaaaattcacccaaggctacccgaaacgtttgaccgcaagttaaacaatctaaaggcaatgctaccaaatactaattgagggtatgtaaacttctgacccactaggaatgtgatgaaagaaataaaagctgaaattaatcattctctttattattattctgacatttcacattttttaaataaagtagtgatcctaactgatctaagacagggaattcttacttttaaatgtcaggaattgtgaaaaactgagttcaaatgtatttggctaaggtgtatgtaaacttctgacttcaattgtacCTTTAAAATTAAAAACATAAAAGTAGGGGTGCAaatcagagaaccagtcagtttctggtgtgaccatttgtctcatgcagcgtgacacatctacTTCGCATAGAGTGGATCAGGCtgtttgtggcctgtggaatggtgTCCTGttccttttcaatggctgtgcaaagttgctggatattggcgggacctGGAACAcgtacacatcaatccagagcatcccaaacatgctcaattgttGACATGTTTGGTGATTATGGAGGCTGTGGAAGAATAGACAtcttcagcttccaggaattgtgaatatatccttgcgacatggaacagtgcattatcatgctgaatcaTGAAGTgatggcagatgaatggcacgacaataggcctcgatcttgtcatggtatctctgtgcattcaaattgacattgataaaatgcaattttgttcgttgtccgtagcttatgcctgcccataacataaccccaccgccaccatggtacactctgttcacaatgttgacatcggCAAACTGCtcgctcacacatacacactgccttttgcccggtacagttgaaaccaggattcatcggTGAAGAGCACCCTTCCCCAGTGTgctagtggccatcgaaggtcAGCATTTGCCCACTGTAGTCGGTTACTACACCGAACACGTAGGTGAGCTTTCCTGAGACAATTTCTGACAGTTTCTTTAAAATGTTTCTGGAGGCTTgtgaaataaacattaaattctctggcaacagttctggtggacattcttgtagtcagcttgccaattgcgctctccctcaacttgagacgtgAGAAAATTTTAGTGGCTtttttttgtccccagcacaaggttcacctgagTAAGAATCATGCTTTTTATctgattcttgatatgccacacctatcaggtggatgtaTTAACTTGGCAAATGCTCACAAGGATgtcaacaaatttgtgcacaaaatttgagagaaataaactttttgtgccTATGGACCATTTCTGGGAgcttttgtttcagctcatgaatcatgggaccatcactttacatgttgcatttatatttttgttcagtatagttgttGCCAGTGCGTATGACTCACTCACAATAAACTCCATGGACTATGACCAACGTGAAAAGAGAATGGTTTTGGAACATGGCAACTGCAAAGTCATCATGTTGCGAGTCCCAAAGACAGCGACTGGCCACTCGTAGACCCTGGTTCCTGTTCTGCCCCACCACCACCTGACACACCAGCTTGTACCGCGGAGGAATCATCTCTTTCACTTTGCTCTTCACCATGTCTGACAGAATCTGGCTAAGATGGCTGCCTGAGGCTGCGTTATAGCTGGCCCCATCCAGATAACTATCCAGCATGGCTTGCACAAGCTTCTGGACCTTACTGGCTTTAAAAAGACATCCCTTCTCTGGTTCAGTCTTATAGGTGTTCTCTAGCTGGACAGGCTGATGGAGGGGCAAACCAGAGAAACTGGCCCGACTGCCCTGAAGCCAACCGCCAAAAGAAAAACGCTTGGTTAGGGCGACCAAGTCCCGGCGTATGAAAGGGGAGTTTGGGTTGCTGATATTGGGCCTCCTGGATGAGGACTCGATAGGGAGGAAGCCCCTTGGGAGTAATAGAGGGTACCgaggatgctgctgctgctgttggtcTCTAGACAGGGAGCTGCGGAGGGTGGAAATGGAGCCTTGGCGGCTCTGGTGAAGCTTCCGGGAGCCCCATGGTTCCATGGCCTGCTGGTTACACTGAGCCAGAATCTCCTGGGAGAGAGGGGGCTGCTGGGTCGTCATTT

Function

NR:

description
tctex1 domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU832636 True 2791 lncRNA 0.44 2 63290968 63293802

Neighbor

gene id symbol gene type direction distance location
LOC110530313 LOC106569079 coding upstream 2139 63281006 ~ 63288829 (+)
LOC118965630 NA coding upstream 11530 63276527 ~ 63279438 (+)
LOC110529126 NA coding upstream 32400 63252168 ~ 63258568 (+)
LOC118965541 LOC106569076 coding upstream 84722 63188433 ~ 63206250 (+)
LOC110530311 LOC106569075 coding upstream 103785 63059524 ~ 63187183 (+)
LOC110530316 LOC106569082 coding downstream 82239 63375496 ~ 63430577 (+)
ptch2 LOC106569083 coding downstream 141557 63435359 ~ 63466410 (+)
LOC118965542 NA coding downstream 265854 63559656 ~ 63570616 (+)
atp6v0b atp6v0b coding downstream 309396 63603198 ~ 63612720 (+)
LOC110530319 b4galt2 coding downstream 319560 63613362 ~ 63760514 (+)
G733175 NA non-coding upstream 21518 63269241 ~ 63269450 (+)
G733172 NA non-coding upstream 23420 63267329 ~ 63267548 (+)
G733170 NA non-coding upstream 25564 63265101 ~ 63265404 (+)
G733169 NA non-coding upstream 25951 63264524 ~ 63265017 (+)
G733168 NA non-coding upstream 26540 63263872 ~ 63264428 (+)
G733203 NA non-coding downstream 37029 63330831 ~ 63331041 (+)
G733204 NA non-coding downstream 37581 63331383 ~ 63331697 (+)
G733206 NA non-coding downstream 41383 63335185 ~ 63335398 (+)
G733210 NA non-coding downstream 47589 63341391 ~ 63341636 (+)
G733211 NA non-coding downstream 48780 63342582 ~ 63342861 (+)
G732350 NA other upstream 408020 62797701 ~ 62882948 (+)
G732052 NA other upstream 886777 62402949 ~ 62404191 (+)
G730694 LOC106569104 other upstream 1419408 61867561 ~ 61874667 (+)
G730690 NA other upstream 1429849 61860485 ~ 61861119 (+)
G733571 LOC106569085 other downstream 253785 63547587 ~ 63548743 (+)
LOC110530334 LOC106569251 other downstream 1252478 64546280 ~ 64551340 (+)
G734690 LOC106569249 other downstream 1325238 64619040 ~ 64620007 (+)
LOC110530343 LOC106569291 other downstream 1403511 64697289 ~ 64698526 (+)

Expression


Co-expression Network