XLOC_002635 (srek1ip1)


Basic Information

Item Value
gene id XLOC_002635
gene name srek1ip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11394528 ~ 11397590 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004901
CCCGGACTCTTTTACCAGACGGATCGGTTTTGTGTTTTGAAAAGCGGCGGACGGAATACGACGAAAGTTATCATTTCTATCTATTTATAATCGAGTACAACATGGCTGCCCCAGGTCCAAATAAAGACAACATCAGAGCTGGATGTAAAAGATGTGGCTATCCTGGTCATCTTACCTTTGAATGTCGTAACTTTCTTCGCGTGGATCCAAGGAAGGATATTGTTTTGGACGTGAGCAGCACCAGCACCGAGGAGAGCGATGAGGAGGAGCAGGAAGCTCTCAGTAAAGAAAAGATTTTCGGCAGCCATTCAAAAGGTTCACAGGAAGATTCTAGAAAAGAAAAGCATAAAAAGAAAAGCAAGGAGAGATCACGTGGAAAAGCAAAAAAGAgGTCTTATTCATCcagtgatgaggaggaggatgaaatgagcaaaaagaagaaaaagcgcAAGAGCAATAAGAAGAAAGGGAAGAAggagaagagagagaaagaaaggaagCACAAGaagaaacagaaaaagaaagacaCAGAGTCCTCCTCATCTGACAGCTCTTCTGAATCATCAGACACAGACTAAAGCTGACCCGCTTCTTTTGTTTGGCCCATTCATTGGACCACAACAAAATATTAGGAACCTATAAAATACCTTCTTCAGGAAGCCATTTGTACATAATTCTGTGACAGACagcttgatttttaaaaaaatatgtcttACCATATTTTCCACTGATAGTTGAAGTGCTGTTTTTTCTGGTGTTTCTAATGAAACTGTATTTTGtatataaatgaaattaaaacaactCTAAATCTTTTTGGGGCCA

Function

symbol description
srek1ip1 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Orthologous to human SREK1IP1 (SREK1 interacting protein 1).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051030-24 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to act upstream of or within RNA splicing and mRNA processing. Orthologous to human SREK1IP1 (SREK1 interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000043728

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004901 True 822 mRNA 0.40 5 11394528 11397590

Neighbor

gene id symbol gene type direction distance location
XLOC_002634 plac8.1 coding downstream 9373 11382365 ~ 11385155 (-)
XLOC_002633 plac8.2 coding downstream 18037 11371961 ~ 11376491 (-)
XLOC_002632 lin54 coding downstream 41059 11324515 ~ 11353469 (-)
XLOC_002631 inip coding downstream 71394 11319971 ~ 11323134 (-)
XLOC_002630 ptbp3 coding downstream 132963 11146321 ~ 11261565 (-)
XLOC_002636 adamts6 coding upstream 196408 11593998 ~ 11764439 (-)
XLOC_002637 trim23 coding upstream 393291 11790881 ~ 11840353 (-)
XLOC_002638 NA coding upstream 497783 11895373 ~ 11898575 (-)
XLOC_002639 CT990561.2 coding upstream 1250840 12648430 ~ 12652512 (-)
XLOC_002640 musk coding upstream 1682502 13080092 ~ 13179077 (-)
XLOC_002626 NA non-coding downstream 606879 10784334 ~ 10787649 (-)
XLOC_002625 NA non-coding downstream 680301 10712178 ~ 10714227 (-)
XLOC_002623 BX323065.1 non-coding downstream 1062101 10319308 ~ 10332427 (-)
XLOC_002621 NA non-coding downstream 1105845 10261345 ~ 10288683 (-)
XLOC_002642 NA non-coding upstream 1901249 13298839 ~ 13301973 (-)
XLOC_002643 CR759894.1 non-coding upstream 1907475 13305065 ~ 13305183 (-)
XLOC_002646 BX293994.2 non-coding upstream 2209437 13607027 ~ 13607143 (-)
XLOC_002647 BX293994.1 non-coding upstream 2214543 13612133 ~ 13612248 (-)

Expression


Co-expression Network